Wall clock time and date at job start Mon Mar 30 2020 23:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35903 * 117.00049 * 2 1 4 4 C 1.38748 * 120.05538 * 359.73131 * 3 2 1 5 5 C 1.38123 * 119.94318 * 180.25154 * 4 3 2 6 6 C 1.38282 * 120.05864 * 0.04105 * 5 4 3 7 7 C 1.38248 * 120.11148 * 359.95155 * 6 5 4 8 8 C 1.50697 * 119.97290 * 180.02562 * 7 6 5 9 9 N 1.46504 * 109.47029 * 259.98058 * 8 7 6 10 10 C 1.34775 * 119.99659 * 180.02562 * 9 8 7 11 11 O 1.21582 * 120.00188 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99690 * 179.97438 * 10 9 8 13 13 C 1.46500 * 119.99868 * 179.97438 * 12 10 9 14 14 C 1.50702 * 109.47090 * 179.97438 * 13 12 10 15 15 H 1.07999 * 120.00008 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00180 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00059 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00137 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47418 * 90.00020 * 18 16 14 20 20 H 1.48507 * 109.46921 * 209.99876 * 18 16 14 21 21 H 1.48494 * 109.46802 * 329.99414 * 18 16 14 22 22 C 1.38165 * 120.05352 * 0.02944 * 7 6 5 23 23 C 1.50705 * 120.02914 * 179.97438 * 22 7 6 24 24 H 1.09002 * 109.47292 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47202 * 299.99846 * 1 2 3 26 26 H 1.08999 * 109.47281 * 59.99918 * 1 2 3 27 27 H 1.07998 * 120.02904 * 0.24228 * 4 3 2 28 28 H 1.08004 * 119.96722 * 179.97438 * 5 4 3 29 29 H 1.08000 * 119.94449 * 179.97438 * 6 5 4 30 30 H 1.08991 * 109.47122 * 19.97990 * 8 7 6 31 31 H 1.08997 * 109.46982 * 139.98413 * 8 7 6 32 32 H 0.96997 * 120.00073 * 359.97438 * 9 8 7 33 33 H 0.97005 * 120.00422 * 359.97438 * 12 10 9 34 34 H 1.08994 * 109.47195 * 300.00005 * 13 12 10 35 35 H 1.08999 * 109.47222 * 60.00202 * 13 12 10 36 36 H 0.96996 * 120.00080 * 179.97438 * 17 16 14 37 37 H 1.08993 * 109.46778 * 270.02066 * 23 22 7 38 38 H 1.08998 * 109.46911 * 30.02242 * 23 22 7 39 39 H 1.09005 * 109.46956 * 150.01896 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 -0.0056 5 6 1.9209 3.6047 -0.0109 6 6 3.3019 3.6758 -0.0114 7 6 4.0560 2.5171 -0.0056 8 6 5.5608 2.5981 -0.0056 9 7 6.0617 2.3779 -1.3646 10 6 7.3873 2.4048 -1.6067 11 8 8.1673 2.6113 -0.6973 12 7 7.8481 2.2017 -2.8569 13 6 9.2889 2.2314 -3.1202 14 6 9.5373 1.9771 -4.5847 15 1 8.7050 1.8105 -5.2526 16 6 10.8269 1.9572 -5.0720 17 7 11.8404 2.1606 -4.2589 18 14 11.1347 1.6427 -6.8875 19 1 11.1427 2.9347 -7.6193 20 1 12.4473 0.9692 -7.0576 21 1 10.0588 0.7739 -7.4286 22 6 3.4311 1.2848 0.0000 23 6 4.2537 0.0221 0.0057 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 0.2128 2.3203 -0.0061 28 1 1.3340 4.5113 -0.0157 29 1 3.7922 4.6380 -0.0159 30 1 5.8715 3.5837 0.3409 31 1 5.9657 1.8350 0.6590 32 1 5.4394 2.2121 -2.0899 33 1 7.2258 2.0358 -3.5823 34 1 9.6880 3.2085 -2.8480 35 1 9.7823 1.4599 -2.5291 36 1 12.7476 2.1462 -4.6016 37 1 4.4522 -0.2868 -1.0205 38 1 5.1976 0.2057 0.5190 39 1 3.7062 -0.7659 0.5229 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000854028042.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:35 Heat of formation + Delta-G solvation = -51.112240 kcal Electronic energy + Delta-G solvation = -20802.681492 eV Core-core repulsion = 17517.420846 eV Total energy + Delta-G solvation = -3285.260646 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.60239 -39.14960 -37.87218 -34.72320 -33.95120 -32.78274 -32.21595 -30.65468 -27.89253 -27.54884 -26.79320 -25.33886 -22.48041 -21.97501 -20.90601 -20.11686 -18.30570 -17.65730 -16.73787 -16.09131 -16.02690 -15.85901 -15.60986 -14.90194 -14.60927 -14.22457 -14.02132 -13.69927 -13.43810 -13.08311 -12.93764 -12.71033 -12.30944 -12.25461 -12.16420 -11.91690 -11.60579 -11.39942 -11.34201 -10.93290 -10.90365 -10.83146 -10.26573 -9.46465 -9.32848 -8.89984 -8.72906 -8.62214 -8.32403 -7.69930 -6.11630 -4.17894 1.00800 1.23095 2.99397 3.27420 3.29234 3.33968 3.36929 3.77462 4.01546 4.36865 4.50718 4.52942 4.77256 4.80084 4.81457 4.99738 5.09387 5.15916 5.21111 5.23694 5.24491 5.53981 5.62426 5.65872 5.74287 5.88642 6.12425 6.17996 6.23615 6.45402 6.56719 6.89322 7.14404 7.18019 7.57068 7.60563 7.62311 7.96032 8.09442 8.81298 9.00030 9.38505 9.53075 10.98681 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027567 B = 0.003070 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.451176 B = 9117.547568 C = 9475.651764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.314 6.314 3 C 0.120 3.880 4 C -0.202 4.202 5 C -0.090 4.090 6 C -0.132 4.132 7 C -0.067 4.067 8 C 0.182 3.818 9 N -0.752 5.752 10 C 0.694 3.306 11 O -0.601 6.601 12 N -0.729 5.729 13 C 0.267 3.733 14 C -0.541 4.541 15 H 0.062 0.938 16 C 0.063 3.937 17 N -0.886 5.886 18 Si 0.904 3.096 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.273 1.273 22 C -0.095 4.095 23 C -0.110 4.110 24 H 0.099 0.901 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.126 0.874 28 H 0.125 0.875 29 H 0.127 0.873 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.392 0.608 33 H 0.386 0.614 34 H 0.024 0.976 35 H 0.025 0.975 36 H 0.265 0.735 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.838 -1.275 8.212 26.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.227 6.227 3 C 0.075 3.925 4 C -0.220 4.220 5 C -0.108 4.108 6 C -0.151 4.151 7 C -0.068 4.068 8 C 0.058 3.942 9 N -0.409 5.409 10 C 0.393 3.607 11 O -0.481 6.481 12 N -0.381 5.381 13 C 0.146 3.854 14 C -0.579 4.579 15 H 0.080 0.920 16 C -0.141 4.141 17 N -0.523 5.523 18 Si 0.731 3.269 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.198 1.198 22 C -0.096 4.096 23 C -0.167 4.167 24 H 0.117 0.883 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.144 0.856 28 H 0.143 0.857 29 H 0.145 0.855 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.225 0.775 33 H 0.218 0.782 34 H 0.042 0.958 35 H 0.043 0.957 36 H 0.075 0.925 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -23.744 -1.273 9.056 25.444 hybrid contribution -0.751 -0.072 -1.650 1.814 sum -24.495 -1.345 7.407 25.626 Atomic orbital electron populations 1.23042 0.78599 1.03882 1.01222 1.86078 1.21094 1.26779 1.88752 1.18797 0.91708 0.84227 0.97744 1.21223 0.99869 0.92419 1.08533 1.20892 0.94512 0.96955 0.98472 1.21039 0.93651 0.98121 1.02269 1.19685 0.95418 0.91982 0.99677 1.19890 0.87376 1.02382 0.84599 1.45133 1.06078 1.79893 1.09825 1.16135 0.81547 0.78637 0.84358 1.90871 1.55436 1.57566 1.44191 1.45709 1.11177 1.74792 1.06469 1.18970 0.73079 0.97569 0.95784 1.21238 0.92763 1.50816 0.93111 0.91972 1.24945 0.95801 0.94913 0.98394 1.69981 0.99022 1.48338 1.35003 0.86418 0.77724 0.78377 0.84384 1.20516 1.21036 1.19783 1.19180 0.90484 0.95924 1.03994 1.20704 0.99139 0.93985 1.02845 0.88290 0.92779 0.92716 0.85603 0.85726 0.85474 0.90975 0.90651 0.77493 0.78186 0.95767 0.95735 0.92495 0.90984 0.90881 0.91351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.18 9.54 -19.43 -0.19 -3.36 16 3 C 0.12 1.30 6.66 -39.22 -0.26 1.04 16 4 C -0.20 -1.85 9.04 -39.44 -0.36 -2.21 16 5 C -0.09 -0.82 10.04 -39.61 -0.40 -1.21 16 6 C -0.13 -1.36 9.66 -39.56 -0.38 -1.75 16 7 C -0.07 -0.78 5.25 -104.65 -0.55 -1.33 16 8 C 0.18 2.50 5.18 -5.19 -0.03 2.47 16 9 N -0.75 -11.65 5.55 -66.42 -0.37 -12.02 16 10 C 0.69 14.59 8.57 -86.92 -0.74 13.85 16 11 O -0.60 -15.24 16.34 5.29 0.09 -15.16 16 12 N -0.73 -15.95 5.55 -66.42 -0.37 -16.32 16 13 C 0.27 7.27 5.43 -5.19 -0.03 7.24 16 14 C -0.54 -14.93 9.28 -34.44 -0.32 -15.25 16 15 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 16 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 17 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 18 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 22 C -0.09 -1.10 5.89 -104.47 -0.62 -1.72 16 23 C -0.11 -1.26 9.38 36.01 0.34 -0.92 16 24 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.27 7.67 -51.93 -0.40 -0.13 16 26 H 0.05 0.28 7.65 -51.93 -0.40 -0.11 16 27 H 0.13 0.86 6.30 -52.49 -0.33 0.53 16 28 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 29 H 0.13 1.18 8.03 -52.49 -0.42 0.76 16 30 H 0.07 1.02 8.00 -51.93 -0.42 0.60 16 31 H 0.08 1.08 6.41 -51.93 -0.33 0.75 16 32 H 0.39 5.19 8.48 -40.82 -0.35 4.84 16 33 H 0.39 7.27 8.34 -40.82 -0.34 6.93 16 34 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.02 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.87 6.13 -51.93 -0.32 0.55 16 39 H 0.07 0.74 7.54 -51.93 -0.39 0.35 16 LS Contribution 331.86 15.07 5.00 5.00 Total: -1.00 -33.79 331.86 -7.91 -41.70 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -5.34 Total: 6.76 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: -2.45 Total: 3.04 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: 0.00 Total: -54.06 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.10 Total: -18.52 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.79 -7.91 -41.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854028042.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.412 kcal (2) G-P(sol) polarization free energy of solvation -33.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds