Wall clock time and date at job start Mon Mar 30 2020 23:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35903 * 117.00049 * 2 1 4 4 C 1.38748 * 120.05538 * 359.73131 * 3 2 1 5 5 C 1.38123 * 119.94318 * 180.25154 * 4 3 2 6 6 C 1.38282 * 120.05864 * 0.04105 * 5 4 3 7 7 C 1.38248 * 120.11148 * 359.95155 * 6 5 4 8 8 C 1.50697 * 119.97290 * 180.02562 * 7 6 5 9 9 N 1.46504 * 109.47029 * 259.98058 * 8 7 6 10 10 C 1.34775 * 119.99659 * 180.02562 * 9 8 7 11 11 O 1.21582 * 120.00188 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99690 * 179.97438 * 10 9 8 13 13 C 1.46500 * 119.99868 * 179.97438 * 12 10 9 14 14 C 1.50702 * 109.47090 * 179.97438 * 13 12 10 15 15 H 1.07999 * 120.00008 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00180 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00059 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00137 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47418 * 90.00020 * 18 16 14 20 20 H 1.48507 * 109.46921 * 209.99876 * 18 16 14 21 21 H 1.48494 * 109.46802 * 329.99414 * 18 16 14 22 22 C 1.38165 * 120.05352 * 0.02944 * 7 6 5 23 23 C 1.50705 * 120.02914 * 179.97438 * 22 7 6 24 24 H 1.09002 * 109.47292 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47202 * 299.99846 * 1 2 3 26 26 H 1.08999 * 109.47281 * 59.99918 * 1 2 3 27 27 H 1.07998 * 120.02904 * 0.24228 * 4 3 2 28 28 H 1.08004 * 119.96722 * 179.97438 * 5 4 3 29 29 H 1.08000 * 119.94449 * 179.97438 * 6 5 4 30 30 H 1.08991 * 109.47122 * 19.97990 * 8 7 6 31 31 H 1.08997 * 109.46982 * 139.98413 * 8 7 6 32 32 H 0.96997 * 120.00073 * 359.97438 * 9 8 7 33 33 H 0.97005 * 120.00422 * 359.97438 * 12 10 9 34 34 H 1.08994 * 109.47195 * 300.00005 * 13 12 10 35 35 H 1.08999 * 109.47222 * 60.00202 * 13 12 10 36 36 H 0.96996 * 120.00080 * 179.97438 * 17 16 14 37 37 H 1.08993 * 109.46778 * 270.02066 * 23 22 7 38 38 H 1.08998 * 109.46911 * 30.02242 * 23 22 7 39 39 H 1.09005 * 109.46956 * 150.01896 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 -0.0056 5 6 1.9209 3.6047 -0.0109 6 6 3.3019 3.6758 -0.0114 7 6 4.0560 2.5171 -0.0056 8 6 5.5608 2.5981 -0.0056 9 7 6.0617 2.3779 -1.3646 10 6 7.3873 2.4048 -1.6067 11 8 8.1673 2.6113 -0.6973 12 7 7.8481 2.2017 -2.8569 13 6 9.2889 2.2314 -3.1202 14 6 9.5373 1.9771 -4.5847 15 1 8.7050 1.8105 -5.2526 16 6 10.8269 1.9572 -5.0720 17 7 11.8404 2.1606 -4.2589 18 14 11.1347 1.6427 -6.8875 19 1 11.1427 2.9347 -7.6193 20 1 12.4473 0.9692 -7.0576 21 1 10.0588 0.7739 -7.4286 22 6 3.4311 1.2848 0.0000 23 6 4.2537 0.0221 0.0057 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 0.2128 2.3203 -0.0061 28 1 1.3340 4.5113 -0.0157 29 1 3.7922 4.6380 -0.0159 30 1 5.8715 3.5837 0.3409 31 1 5.9657 1.8350 0.6590 32 1 5.4394 2.2121 -2.0899 33 1 7.2258 2.0358 -3.5823 34 1 9.6880 3.2085 -2.8480 35 1 9.7823 1.4599 -2.5291 36 1 12.7476 2.1462 -4.6016 37 1 4.4522 -0.2868 -1.0205 38 1 5.1976 0.2057 0.5190 39 1 3.7062 -0.7659 0.5229 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000854028042.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:34 Heat of formation + Delta-G solvation = -75.403141 kcal Electronic energy + Delta-G solvation = -20803.734824 eV Core-core repulsion = 17517.420846 eV Total energy + Delta-G solvation = -3286.313978 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.44443 -40.71642 -38.74091 -36.27984 -35.67497 -34.35530 -33.63235 -31.66708 -29.30705 -28.47109 -27.84783 -26.52676 -24.47799 -22.75827 -21.89330 -21.75543 -19.87244 -18.68627 -17.92406 -17.55814 -17.32866 -16.69713 -16.62700 -16.42711 -16.35267 -15.43390 -15.18444 -14.96936 -14.52625 -14.33068 -14.18460 -14.02041 -13.86003 -13.46432 -13.17824 -13.01722 -12.87842 -12.76235 -12.68788 -12.21411 -12.20842 -11.98668 -11.67820 -11.45740 -11.27467 -10.78818 -10.26355 -9.76837 -9.56631 -9.08638 -8.26735 -6.43012 0.18356 0.45448 1.44431 1.47303 1.58337 1.95670 2.26472 2.37637 2.41187 2.78235 3.08161 3.61945 3.63893 3.82213 4.03608 4.14536 4.20331 4.34682 4.42650 4.49376 4.58956 4.75252 4.76610 4.77005 4.82338 4.86815 5.10552 5.28722 5.29820 5.36869 5.46898 5.48629 5.51503 5.61771 5.69304 5.80522 5.87186 6.26839 6.46244 6.68797 7.26020 7.31886 7.73681 8.85706 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027567 B = 0.003070 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.451176 B = 9117.547568 C = 9475.651764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.333 6.333 3 C 0.112 3.888 4 C -0.196 4.196 5 C -0.086 4.086 6 C -0.138 4.138 7 C -0.075 4.075 8 C 0.183 3.817 9 N -0.726 5.726 10 C 0.693 3.307 11 O -0.647 6.647 12 N -0.723 5.723 13 C 0.286 3.714 14 C -0.554 4.554 15 H 0.083 0.917 16 C 0.003 3.997 17 N -0.931 5.931 18 Si 0.986 3.014 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.256 1.256 22 C -0.112 4.112 23 C -0.106 4.106 24 H 0.115 0.885 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.153 0.847 28 H 0.154 0.846 29 H 0.136 0.864 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.407 0.593 33 H 0.404 0.596 34 H -0.014 1.014 35 H -0.014 1.014 36 H 0.269 0.731 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.833 -1.180 6.729 28.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.247 6.247 3 C 0.066 3.934 4 C -0.215 4.215 5 C -0.103 4.103 6 C -0.157 4.157 7 C -0.076 4.076 8 C 0.060 3.940 9 N -0.383 5.383 10 C 0.393 3.607 11 O -0.530 6.530 12 N -0.377 5.377 13 C 0.162 3.838 14 C -0.592 4.592 15 H 0.101 0.899 16 C -0.196 4.196 17 N -0.570 5.570 18 Si 0.809 3.191 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.180 1.180 22 C -0.113 4.113 23 C -0.162 4.162 24 H 0.133 0.867 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.171 0.829 28 H 0.172 0.828 29 H 0.154 0.846 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.243 0.757 33 H 0.239 0.761 34 H 0.004 0.996 35 H 0.004 0.996 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -26.842 -1.187 7.566 27.913 hybrid contribution 0.042 -0.107 -1.083 1.089 sum -26.800 -1.294 6.484 27.604 Atomic orbital electron populations 1.23335 0.76515 1.05440 1.02303 1.86054 1.23304 1.26661 1.88660 1.18920 0.91518 0.85196 0.97735 1.21566 1.01252 0.91759 1.06919 1.21232 0.94034 0.98125 0.96955 1.21215 0.94493 0.97880 1.02098 1.19425 0.93687 0.92818 1.01623 1.19936 0.89255 1.01808 0.83017 1.44902 1.04063 1.77964 1.11335 1.16264 0.82920 0.78143 0.83367 1.90839 1.57245 1.59477 1.45458 1.45303 1.09522 1.75245 1.07615 1.18408 0.75581 0.94083 0.95683 1.21604 0.93747 1.50722 0.93164 0.89908 1.26066 0.95393 0.94181 1.03966 1.70144 0.99705 1.49347 1.37770 0.85139 0.77848 0.78666 0.77435 1.19587 1.20929 1.17973 1.19223 0.91355 0.95621 1.05130 1.20625 0.98722 0.94486 1.02393 0.86713 0.91553 0.91633 0.82911 0.82840 0.84630 0.91301 0.91617 0.75704 0.76108 0.99593 0.99615 0.92238 0.91442 0.92062 0.91037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.28 16 2 O -0.33 -6.16 9.54 -92.45 -0.88 -7.04 16 3 C 0.11 2.21 6.66 22.51 0.15 2.36 16 4 C -0.20 -2.99 9.04 22.36 0.20 -2.79 16 5 C -0.09 -1.27 10.04 22.25 0.22 -1.05 16 6 C -0.14 -2.58 9.66 22.28 0.22 -2.37 16 7 C -0.07 -1.69 5.25 -19.88 -0.10 -1.79 16 8 C 0.18 5.10 5.18 85.63 0.44 5.54 16 9 N -0.73 -22.52 5.55 -482.32 -2.68 -25.20 16 10 C 0.69 29.90 8.57 179.06 1.53 31.44 16 11 O -0.65 -34.27 16.34 -3.97 -0.06 -34.33 16 12 N -0.72 -32.20 5.55 -482.31 -2.68 -34.88 16 13 C 0.29 16.19 5.43 85.63 0.46 16.65 16 14 C -0.55 -30.75 9.28 25.60 0.24 -30.51 16 15 H 0.08 4.15 7.60 -2.91 -0.02 4.13 16 16 C 0.00 0.19 5.46 84.65 0.46 0.66 16 17 N -0.93 -56.94 13.29 21.45 0.28 -56.66 16 18 Si 0.99 42.83 29.54 68.60 2.03 44.85 16 19 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 20 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 21 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 22 C -0.11 -2.53 5.89 -19.77 -0.12 -2.65 16 23 C -0.11 -2.44 9.38 71.24 0.67 -1.78 16 24 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.07 0.46 7.67 -2.39 -0.02 0.44 16 26 H 0.07 0.47 7.65 -2.39 -0.02 0.46 16 27 H 0.15 1.45 6.30 -2.91 -0.02 1.43 16 28 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 29 H 0.14 2.25 8.03 -2.91 -0.02 2.23 16 30 H 0.07 1.97 8.00 -2.39 -0.02 1.95 16 31 H 0.07 1.97 6.41 -2.39 -0.02 1.96 16 32 H 0.41 10.39 8.48 -92.71 -0.79 9.60 16 33 H 0.40 14.95 8.34 -92.70 -0.77 14.18 16 34 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 35 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 36 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 37 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.06 1.52 6.13 -2.39 -0.01 1.51 16 39 H 0.07 1.56 7.54 -2.38 -0.02 1.54 16 Total: -1.00 -75.31 331.86 1.02 -74.29 By element: Atomic # 1 Polarization: 24.45 SS G_CDS: -0.48 Total: 23.97 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: 5.49 Total: 14.99 kcal Atomic # 7 Polarization: -111.66 SS G_CDS: -5.07 Total: -116.73 kcal Atomic # 8 Polarization: -40.43 SS G_CDS: -0.95 Total: -41.38 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Total: -75.31 1.02 -74.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854028042.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.114 kcal (2) G-P(sol) polarization free energy of solvation -75.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds