Wall clock time and date at job start Mon Mar 30 2020 23:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38282 * 119.94698 * 2 1 4 4 C 1.38127 * 120.05832 * 179.97438 * 3 2 1 5 5 C 1.38752 * 119.94063 * 359.97438 * 4 3 2 6 6 O 1.35901 * 120.05611 * 179.97438 * 5 4 3 7 7 C 1.38711 * 119.89006 * 0.02562 * 5 4 3 8 8 C 1.50703 * 120.02502 * 179.97438 * 7 5 4 9 9 N 1.46499 * 109.47138 * 284.99679 * 8 7 5 10 10 C 1.34777 * 119.99665 * 180.28062 * 9 8 7 11 11 O 1.21583 * 120.00270 * 359.72083 * 10 9 8 12 12 N 1.34775 * 119.99585 * 179.72218 * 10 9 8 13 13 C 1.46507 * 119.99876 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.46968 * 180.02562 * 13 12 10 15 15 C 1.50702 * 109.46878 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99766 * 359.97438 * 15 14 13 17 17 C 1.37869 * 119.99946 * 179.97438 * 15 14 13 18 18 N 1.31518 * 120.00172 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 120.00140 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47213 * 89.99904 * 19 17 15 21 21 H 1.48502 * 109.47154 * 210.00155 * 19 17 15 22 22 H 1.48504 * 109.47159 * 330.00245 * 19 17 15 23 23 C 1.38164 * 119.94487 * 0.24729 * 7 5 4 24 24 H 1.09003 * 109.46969 * 89.99782 * 1 2 3 25 25 H 1.08997 * 109.47504 * 210.00301 * 1 2 3 26 26 H 1.08999 * 109.47396 * 330.00446 * 1 2 3 27 27 H 1.08000 * 119.97550 * 359.97340 * 3 2 1 28 28 H 1.07998 * 120.03073 * 179.97438 * 4 3 2 29 29 H 0.96701 * 114.00524 * 270.02824 * 6 5 4 30 30 H 1.09009 * 109.46601 * 164.99581 * 8 7 5 31 31 H 1.08998 * 109.47035 * 45.00089 * 8 7 5 32 32 H 0.97001 * 119.99790 * 359.97438 * 9 8 7 33 33 H 0.97000 * 120.00523 * 0.02562 * 12 10 9 34 34 H 1.08998 * 109.47039 * 300.00042 * 13 12 10 35 35 H 1.08994 * 109.46660 * 60.00264 * 13 12 10 36 36 H 1.08998 * 109.46943 * 299.99694 * 14 13 12 37 37 H 1.08994 * 109.47116 * 60.00083 * 14 13 12 38 38 H 0.97004 * 120.00078 * 180.02562 * 18 17 15 39 39 H 1.08000 * 119.97449 * 179.75206 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1982 0.0000 4 6 3.5785 1.2009 0.0005 5 6 4.2734 -0.0001 0.0016 6 8 5.6324 -0.0002 0.0016 7 6 3.5786 -1.2007 0.0016 8 6 4.3302 -2.5069 0.0022 9 7 4.8841 -2.7522 -1.3317 10 6 5.5955 -3.8718 -1.5705 11 8 5.7819 -4.6756 -0.6776 12 7 6.1003 -4.1001 -2.7991 13 6 6.8741 -5.3168 -3.0586 14 6 7.3279 -5.3306 -4.5196 15 6 8.1234 -6.5825 -4.7867 16 1 8.2890 -7.2965 -3.9935 17 6 8.6396 -6.8162 -6.0435 18 7 9.3334 -7.9089 -6.2768 19 14 8.3526 -5.5815 -7.4156 20 1 9.4520 -4.5831 -7.4211 21 1 8.3207 -6.2899 -8.7204 22 1 7.0570 -4.8898 -7.1961 23 6 2.1970 -1.1980 -0.0046 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 1.6560 2.1328 -0.0004 28 1 4.1172 2.1369 0.0001 29 1 6.0258 -0.0006 -0.8818 30 1 3.6509 -3.3168 0.2682 31 1 5.1410 -2.4592 0.7292 32 1 4.7350 -2.1110 -2.0441 33 1 5.9519 -3.4586 -3.5114 34 1 7.7476 -5.3377 -2.4069 35 1 6.2532 -6.1909 -2.8623 36 1 6.4547 -5.3095 -5.1716 37 1 7.9488 -4.4565 -4.7155 38 1 9.6970 -8.0731 -7.1610 39 1 1.6556 -2.1324 -0.0087 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000858360325.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:47:43 Heat of formation + Delta-G solvation = -61.880397 kcal Electronic energy + Delta-G solvation = -20511.627839 eV Core-core repulsion = 17225.900251 eV Total energy + Delta-G solvation = -3285.727588 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.50124 -39.41437 -37.24170 -35.42620 -34.58228 -32.82481 -32.12712 -31.63396 -29.93171 -26.92934 -26.23984 -24.44764 -22.68413 -21.17045 -20.79648 -20.66639 -18.63425 -18.10881 -16.87713 -16.50509 -15.99892 -15.95306 -15.24317 -15.06698 -14.33301 -14.30020 -13.94930 -13.86269 -13.79032 -13.70627 -13.18958 -12.99760 -12.63415 -12.57714 -12.04338 -11.94673 -11.75938 -11.46842 -11.19257 -10.73067 -10.38020 -10.26965 -9.98294 -9.82458 -9.33664 -9.26168 -9.07733 -8.76443 -8.61960 -8.37469 -6.10084 -4.10033 0.78074 0.91505 2.91864 3.25282 3.32696 3.33923 3.34559 3.53550 3.90420 4.31150 4.38182 4.44205 4.50827 4.61082 4.89569 4.92253 5.16596 5.21882 5.22785 5.32536 5.44202 5.55314 5.64967 5.75132 5.90661 6.08917 6.13453 6.18615 6.26447 6.42942 6.51130 6.60503 6.82674 7.04170 7.25675 7.29816 7.35277 7.68481 8.29804 8.46966 8.91133 8.95307 9.50003 11.03021 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027331 B = 0.002906 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.248263 B = 9632.479261 C = 9787.890228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.098 4.098 3 C -0.100 4.100 4 C -0.145 4.145 5 C 0.117 3.883 6 O -0.492 6.492 7 C -0.126 4.126 8 C 0.186 3.814 9 N -0.749 5.749 10 C 0.700 3.300 11 O -0.592 6.592 12 N -0.742 5.742 13 C 0.148 3.852 14 C -0.021 4.021 15 C -0.522 4.522 16 H 0.076 0.924 17 C 0.069 3.931 18 N -0.899 5.899 19 Si 0.883 3.117 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.267 1.267 23 C -0.086 4.086 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.126 0.874 28 H 0.130 0.870 29 H 0.391 0.609 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.391 0.609 33 H 0.391 0.609 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.021 0.979 37 H 0.017 0.983 38 H 0.265 0.735 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.129 21.542 10.350 29.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.098 4.098 3 C -0.118 4.118 4 C -0.163 4.163 5 C 0.072 3.928 6 O -0.303 6.303 7 C -0.127 4.127 8 C 0.062 3.938 9 N -0.406 5.406 10 C 0.400 3.600 11 O -0.471 6.471 12 N -0.396 5.396 13 C 0.025 3.975 14 C -0.059 4.059 15 C -0.560 4.560 16 H 0.094 0.906 17 C -0.133 4.133 18 N -0.537 5.537 19 Si 0.710 3.290 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.191 1.191 23 C -0.104 4.104 24 H 0.090 0.910 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.144 0.856 28 H 0.147 0.853 29 H 0.248 0.752 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.224 0.776 33 H 0.223 0.777 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.039 0.961 37 H 0.035 0.965 38 H 0.074 0.926 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -16.885 20.628 11.660 29.096 hybrid contribution -0.056 1.239 -2.003 2.356 sum -16.941 21.867 9.657 29.299 Atomic orbital electron populations 1.20790 0.90818 1.02960 1.02521 1.19954 0.96410 0.92921 1.00548 1.20961 0.93525 0.97794 0.99521 1.21434 0.94571 0.97831 1.02470 1.18356 0.83195 0.91601 0.99627 1.84818 1.15540 1.96348 1.33561 1.20291 0.94087 0.94670 1.03641 1.19842 0.97034 0.92307 0.84604 1.45115 1.58912 1.23753 1.12803 1.16011 0.78756 0.81656 0.83619 1.90914 1.64581 1.47099 1.44466 1.45518 1.57838 1.26304 1.09928 1.21379 0.93789 0.83726 0.98558 1.19793 0.96696 0.98302 0.91117 1.20925 1.32757 1.04685 0.97655 0.90567 1.25002 0.94517 0.95293 0.98515 1.69907 1.35591 1.25735 1.22481 0.86743 0.79088 0.81579 0.81582 1.20256 1.21307 1.19128 1.20945 0.92702 0.98123 0.98650 0.91029 0.91325 0.91471 0.85595 0.85250 0.75243 0.90969 0.90241 0.77634 0.77667 0.92134 0.92141 0.96069 0.96490 0.92564 0.85258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.60 10.01 36.00 0.36 -0.24 16 2 C -0.10 -0.73 5.88 -104.60 -0.62 -1.35 16 3 C -0.10 -0.71 9.69 -39.61 -0.38 -1.10 16 4 C -0.14 -1.16 9.99 -39.43 -0.39 -1.55 16 5 C 0.12 1.10 6.68 -39.22 -0.26 0.84 16 6 O -0.49 -4.70 12.84 -19.43 -0.25 -4.95 16 7 C -0.13 -1.21 5.26 -104.47 -0.55 -1.76 16 8 C 0.19 2.17 5.41 -5.19 -0.03 2.14 16 9 N -0.75 -9.04 5.55 -66.41 -0.37 -9.41 16 10 C 0.70 11.82 8.57 -86.92 -0.74 11.07 16 11 O -0.59 -12.68 16.34 5.29 0.09 -12.59 16 12 N -0.74 -12.31 5.56 -65.22 -0.36 -12.67 16 13 C 0.15 3.07 5.61 -4.04 -0.02 3.05 16 14 C -0.02 -0.49 4.16 -27.88 -0.12 -0.60 16 15 C -0.52 -14.67 9.66 -34.44 -0.33 -15.00 16 16 H 0.08 2.33 7.99 -52.49 -0.42 1.91 16 17 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 18 N -0.90 -27.42 13.96 55.43 0.77 -26.65 16 19 Si 0.88 21.00 27.47 -169.99 -4.67 16.33 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.27 -5.97 6.54 56.52 0.37 -5.61 16 23 C -0.09 -0.72 9.32 -39.60 -0.37 -1.09 16 24 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 25 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 26 H 0.07 0.28 8.08 -51.93 -0.42 -0.14 16 27 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 28 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 29 H 0.39 2.35 9.06 45.56 0.41 2.76 16 30 H 0.07 0.87 7.95 -51.92 -0.41 0.46 16 31 H 0.08 1.06 8.01 -51.93 -0.42 0.65 16 32 H 0.39 3.61 8.48 -40.82 -0.35 3.26 16 33 H 0.39 5.27 8.49 -40.82 -0.35 4.93 16 34 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.02 0.47 7.20 -51.93 -0.37 0.10 16 37 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 38 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 39 H 0.13 0.96 8.00 -52.49 -0.42 0.54 16 LS Contribution 335.94 15.07 5.06 5.06 Total: -1.00 -34.65 335.94 -8.12 -42.77 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -4.83 Total: 5.83 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -3.55 Total: -3.72 kcal Atomic # 7 Polarization: -48.77 SS G_CDS: 0.04 Total: -48.73 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -0.16 Total: -17.54 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.67 Total: 16.33 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.65 -8.12 -42.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858360325.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.114 kcal (2) G-P(sol) polarization free energy of solvation -34.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds