Wall clock time and date at job start Mon Mar 30 2020 23:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38282 * 119.94698 * 2 1 4 4 C 1.38127 * 120.05832 * 179.97438 * 3 2 1 5 5 C 1.38752 * 119.94063 * 359.97438 * 4 3 2 6 6 O 1.35901 * 120.05611 * 179.97438 * 5 4 3 7 7 C 1.38711 * 119.89006 * 0.02562 * 5 4 3 8 8 C 1.50703 * 120.02502 * 179.97438 * 7 5 4 9 9 N 1.46499 * 109.47138 * 284.99679 * 8 7 5 10 10 C 1.34777 * 119.99665 * 180.28062 * 9 8 7 11 11 O 1.21583 * 120.00270 * 359.72083 * 10 9 8 12 12 N 1.34775 * 119.99585 * 179.72218 * 10 9 8 13 13 C 1.46507 * 119.99876 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.46968 * 180.02562 * 13 12 10 15 15 C 1.50702 * 109.46878 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99766 * 359.97438 * 15 14 13 17 17 C 1.37869 * 119.99946 * 179.97438 * 15 14 13 18 18 N 1.31518 * 120.00172 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 120.00140 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47213 * 89.99904 * 19 17 15 21 21 H 1.48502 * 109.47154 * 210.00155 * 19 17 15 22 22 H 1.48504 * 109.47159 * 330.00245 * 19 17 15 23 23 C 1.38164 * 119.94487 * 0.24729 * 7 5 4 24 24 H 1.09003 * 109.46969 * 89.99782 * 1 2 3 25 25 H 1.08997 * 109.47504 * 210.00301 * 1 2 3 26 26 H 1.08999 * 109.47396 * 330.00446 * 1 2 3 27 27 H 1.08000 * 119.97550 * 359.97340 * 3 2 1 28 28 H 1.07998 * 120.03073 * 179.97438 * 4 3 2 29 29 H 0.96701 * 114.00524 * 270.02824 * 6 5 4 30 30 H 1.09009 * 109.46601 * 164.99581 * 8 7 5 31 31 H 1.08998 * 109.47035 * 45.00089 * 8 7 5 32 32 H 0.97001 * 119.99790 * 359.97438 * 9 8 7 33 33 H 0.97000 * 120.00523 * 0.02562 * 12 10 9 34 34 H 1.08998 * 109.47039 * 300.00042 * 13 12 10 35 35 H 1.08994 * 109.46660 * 60.00264 * 13 12 10 36 36 H 1.08998 * 109.46943 * 299.99694 * 14 13 12 37 37 H 1.08994 * 109.47116 * 60.00083 * 14 13 12 38 38 H 0.97004 * 120.00078 * 180.02562 * 18 17 15 39 39 H 1.08000 * 119.97449 * 179.75206 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1982 0.0000 4 6 3.5785 1.2009 0.0005 5 6 4.2734 -0.0001 0.0016 6 8 5.6324 -0.0002 0.0016 7 6 3.5786 -1.2007 0.0016 8 6 4.3302 -2.5069 0.0022 9 7 4.8841 -2.7522 -1.3317 10 6 5.5955 -3.8718 -1.5705 11 8 5.7819 -4.6756 -0.6776 12 7 6.1003 -4.1001 -2.7991 13 6 6.8741 -5.3168 -3.0586 14 6 7.3279 -5.3306 -4.5196 15 6 8.1234 -6.5825 -4.7867 16 1 8.2890 -7.2965 -3.9935 17 6 8.6396 -6.8162 -6.0435 18 7 9.3334 -7.9089 -6.2768 19 14 8.3526 -5.5815 -7.4156 20 1 9.4520 -4.5831 -7.4211 21 1 8.3207 -6.2899 -8.7204 22 1 7.0570 -4.8898 -7.1961 23 6 2.1970 -1.1980 -0.0046 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 1.6560 2.1328 -0.0004 28 1 4.1172 2.1369 0.0001 29 1 6.0258 -0.0006 -0.8818 30 1 3.6509 -3.3168 0.2682 31 1 5.1410 -2.4592 0.7292 32 1 4.7350 -2.1110 -2.0441 33 1 5.9519 -3.4586 -3.5114 34 1 7.7476 -5.3377 -2.4069 35 1 6.2532 -6.1909 -2.8623 36 1 6.4547 -5.3095 -5.1716 37 1 7.9488 -4.4565 -4.7155 38 1 9.6970 -8.0731 -7.1610 39 1 1.6556 -2.1324 -0.0087 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000858360325.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:47:43 Heat of formation + Delta-G solvation = -88.870502 kcal Electronic energy + Delta-G solvation = -20512.798218 eV Core-core repulsion = 17225.900251 eV Total energy + Delta-G solvation = -3286.897967 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.35078 -40.59251 -37.87605 -36.84952 -35.93499 -34.78889 -32.93917 -32.44628 -31.56649 -27.82404 -27.06987 -26.07788 -23.31942 -22.68354 -22.06887 -21.79266 -19.54671 -19.21958 -18.89735 -17.28679 -17.21142 -16.61037 -16.58019 -16.29095 -15.83261 -15.38129 -15.23979 -15.12848 -14.78456 -14.58144 -14.35033 -14.03779 -13.76320 -13.44177 -13.33277 -13.01845 -12.57945 -12.49507 -12.37456 -12.17014 -12.14533 -11.74851 -11.54970 -11.40367 -11.31544 -10.77698 -10.40716 -9.93113 -9.75390 -9.36705 -8.28718 -6.36126 0.14162 0.31043 1.40066 1.43119 1.54301 1.77403 2.15311 2.38183 2.63321 3.06338 3.29496 3.41290 3.58098 3.83491 4.00962 4.28844 4.35473 4.41279 4.46211 4.50537 4.65970 4.76956 4.77215 4.85527 4.88986 5.06574 5.15807 5.23090 5.32982 5.39754 5.42994 5.45508 5.49181 5.61923 5.67434 5.89456 6.01125 6.24534 6.71393 6.79242 7.12378 7.28322 7.58608 8.88212 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027331 B = 0.002906 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.248263 B = 9632.479261 C = 9787.890228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.101 4.101 3 C -0.096 4.096 4 C -0.149 4.149 5 C 0.107 3.893 6 O -0.508 6.508 7 C -0.137 4.137 8 C 0.192 3.808 9 N -0.723 5.723 10 C 0.699 3.301 11 O -0.641 6.641 12 N -0.729 5.729 13 C 0.164 3.836 14 C -0.011 4.011 15 C -0.539 4.539 16 H 0.028 0.972 17 C 0.003 3.997 18 N -0.952 5.952 19 Si 0.961 3.039 20 H -0.265 1.265 21 H -0.288 1.288 22 H -0.236 1.236 23 C -0.092 4.092 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.151 0.849 28 H 0.143 0.857 29 H 0.404 0.596 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.409 0.591 33 H 0.411 0.589 34 H 0.040 0.960 35 H 0.040 0.960 36 H 0.038 0.962 37 H 0.037 0.963 38 H 0.268 0.732 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.219 25.115 9.176 32.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.101 4.101 3 C -0.114 4.114 4 C -0.167 4.167 5 C 0.062 3.938 6 O -0.321 6.321 7 C -0.138 4.138 8 C 0.068 3.932 9 N -0.380 5.380 10 C 0.399 3.601 11 O -0.523 6.523 12 N -0.385 5.385 13 C 0.040 3.960 14 C -0.048 4.048 15 C -0.578 4.578 16 H 0.046 0.954 17 C -0.194 4.194 18 N -0.592 5.592 19 Si 0.783 3.217 20 H -0.190 1.190 21 H -0.214 1.214 22 H -0.159 1.159 23 C -0.111 4.111 24 H 0.097 0.903 25 H 0.089 0.911 26 H 0.098 0.902 27 H 0.169 0.831 28 H 0.161 0.839 29 H 0.262 0.738 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.245 0.755 33 H 0.247 0.753 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.077 0.923 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -19.014 24.274 10.477 32.566 hybrid contribution 0.577 0.107 -1.534 1.642 sum -18.437 24.380 8.943 31.848 Atomic orbital electron populations 1.20839 0.89172 1.03781 1.03232 1.20239 0.97661 0.92558 0.99666 1.21299 0.93324 0.98768 0.98042 1.21633 0.95124 0.97815 1.02157 1.18499 0.83131 0.92020 1.00182 1.84787 1.15943 1.96405 1.34941 1.20097 0.94466 0.93524 1.05694 1.19756 0.96347 0.93592 0.83530 1.44869 1.57108 1.22333 1.13711 1.16140 0.78860 0.82228 0.82915 1.90888 1.66360 1.49105 1.45943 1.45090 1.57302 1.25432 1.10666 1.20880 0.93170 0.84864 0.97131 1.19636 0.96651 0.96222 0.92325 1.21263 1.33727 1.05998 0.96796 0.95382 1.26104 0.93903 0.97652 1.01776 1.70084 1.37181 1.28428 1.23495 0.85507 0.80644 0.78620 0.76881 1.18968 1.21358 1.15851 1.21087 0.92279 0.99088 0.98639 0.90268 0.91083 0.90166 0.83122 0.83882 0.73781 0.91566 0.92316 0.75485 0.75336 0.94138 0.94136 0.94420 0.94504 0.92342 0.84691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.01 71.23 0.71 -0.15 16 2 C -0.10 -1.25 5.88 -19.85 -0.12 -1.36 16 3 C -0.10 -1.09 9.69 22.25 0.22 -0.87 16 4 C -0.15 -2.03 9.99 22.37 0.22 -1.80 16 5 C 0.11 1.84 6.68 22.51 0.15 1.99 16 6 O -0.51 -9.14 12.84 -92.44 -1.19 -10.33 16 7 C -0.14 -2.48 5.26 -19.77 -0.10 -2.58 16 8 C 0.19 4.42 5.41 85.63 0.46 4.88 16 9 N -0.72 -16.63 5.55 -482.29 -2.68 -19.31 16 10 C 0.70 23.23 8.57 179.05 1.53 24.76 16 11 O -0.64 -28.02 16.34 -3.98 -0.06 -28.08 16 12 N -0.73 -23.16 5.56 -478.53 -2.66 -25.83 16 13 C 0.16 6.83 5.61 86.38 0.48 7.31 16 14 C -0.01 -0.47 4.16 29.85 0.12 -0.34 16 15 C -0.54 -30.95 9.66 25.60 0.25 -30.71 16 16 H 0.03 1.81 7.99 -2.91 -0.02 1.79 16 17 C 0.00 0.15 5.47 84.65 0.46 0.61 16 18 N -0.95 -59.61 13.96 21.44 0.30 -59.31 16 19 Si 0.96 42.10 27.47 68.60 1.88 43.98 16 20 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 21 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 22 H -0.24 -9.09 6.54 99.48 0.65 -8.43 16 23 C -0.09 -1.41 9.32 22.25 0.21 -1.21 16 24 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 25 H 0.07 0.52 8.09 -2.39 -0.02 0.50 16 26 H 0.08 0.41 8.08 -2.39 -0.02 0.39 16 27 H 0.15 0.92 8.06 -2.91 -0.02 0.90 16 28 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 29 H 0.40 4.28 9.06 -74.06 -0.67 3.61 16 30 H 0.07 1.61 7.95 -2.38 -0.02 1.59 16 31 H 0.06 1.61 8.01 -2.39 -0.02 1.59 16 32 H 0.41 6.61 8.48 -92.71 -0.79 5.82 16 33 H 0.41 9.82 8.49 -92.71 -0.79 9.03 16 34 H 0.04 1.83 8.14 -2.39 -0.02 1.82 16 35 H 0.04 1.83 8.14 -2.39 -0.02 1.82 16 36 H 0.04 1.57 7.20 -2.39 -0.02 1.55 16 37 H 0.04 1.51 7.57 -2.39 -0.02 1.49 16 38 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 39 H 0.14 1.83 8.00 -2.91 -0.02 1.80 16 Total: -1.00 -77.54 335.94 -1.02 -78.56 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: -1.21 Total: 19.78 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: 4.61 Total: 0.53 kcal Atomic # 7 Polarization: -99.40 SS G_CDS: -5.04 Total: -104.44 kcal Atomic # 8 Polarization: -37.16 SS G_CDS: -1.25 Total: -38.41 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 1.88 Total: 43.98 kcal Total: -77.54 -1.02 -78.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858360325.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.311 kcal (2) G-P(sol) polarization free energy of solvation -77.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds