Wall clock time and date at job start Tue Mar 31 2020 00:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.34115 * 125.82330 * 2 1 4 4 H 0.96998 * 125.34768 * 359.97324 * 3 2 1 5 5 C 1.37839 * 109.30241 * 179.83257 * 3 2 1 6 6 C 1.46848 * 125.80118 * 180.19418 * 5 3 2 7 7 O 1.21666 * 120.00233 * 283.74463 * 6 5 3 8 8 N 1.34779 * 119.99479 * 103.74919 * 6 5 3 9 9 C 1.46492 * 120.00303 * 4.97005 * 8 6 5 10 10 C 1.46502 * 119.99567 * 184.97362 * 8 6 5 11 11 H 1.09001 * 109.47381 * 359.97438 * 10 8 6 12 12 C 1.53002 * 109.47202 * 239.99833 * 10 8 6 13 13 C 1.50699 * 109.47444 * 119.99725 * 10 8 6 14 14 H 1.08011 * 119.99587 * 359.97438 * 13 10 8 15 15 C 1.37876 * 120.00516 * 179.97438 * 13 10 8 16 16 N 1.31506 * 119.99568 * 0.02562 * 15 13 10 17 17 Si 1.86797 * 120.00258 * 179.97438 * 15 13 10 18 18 H 1.48501 * 109.47054 * 60.00002 * 17 15 13 19 19 H 1.48493 * 109.47034 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47122 * 300.00461 * 17 15 13 21 21 C 1.36239 * 108.39603 * 0.43256 * 5 3 2 22 22 C 1.50701 * 126.50690 * 179.76690 * 21 5 3 23 23 C 1.38619 * 125.82884 * 180.30468 * 2 1 3 24 24 C 1.46616 * 126.51504 * 359.97438 * 23 2 1 25 25 O 1.21315 * 120.00051 * 180.02562 * 24 23 2 26 26 H 1.09006 * 109.47396 * 269.69392 * 1 2 3 27 27 H 1.08996 * 109.47439 * 29.69580 * 1 2 3 28 28 H 1.08995 * 109.47304 * 149.69400 * 1 2 3 29 29 H 1.08997 * 109.47380 * 94.44582 * 9 8 6 30 30 H 1.09007 * 109.47022 * 214.44181 * 9 8 6 31 31 H 1.09004 * 109.47427 * 334.44596 * 9 8 6 32 32 H 1.08997 * 109.47379 * 180.02562 * 12 10 8 33 33 H 1.09001 * 109.46834 * 300.00189 * 12 10 8 34 34 H 1.08996 * 109.46968 * 59.99911 * 12 10 8 35 35 H 0.97008 * 120.00411 * 180.02562 * 16 15 13 36 36 H 1.09002 * 109.46967 * 269.99596 * 22 21 5 37 37 H 1.09000 * 109.47566 * 29.99110 * 22 21 5 38 38 H 1.09000 * 109.47344 * 149.99923 * 22 21 5 39 39 H 1.08000 * 119.99628 * 0.02562 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2919 1.0874 0.0000 4 1 1.9789 2.0055 -0.0004 5 6 3.6134 0.6955 0.0038 6 6 4.7757 1.5930 0.0091 7 8 5.1076 2.1646 -1.0124 8 7 5.4747 1.7836 1.1455 9 6 5.1434 1.0138 2.3471 10 6 6.5659 2.7606 1.1791 11 1 6.6632 3.2304 0.2004 12 6 7.8740 2.0520 1.5365 13 6 6.2658 3.8135 2.2147 14 1 5.3532 3.7604 2.7900 15 6 7.1561 4.8445 2.4278 16 7 8.2669 4.9093 1.7270 17 14 6.7837 6.1499 3.7109 18 1 6.6504 5.5097 5.0442 19 1 7.8903 7.1394 3.7459 20 1 5.5144 6.8379 3.3632 21 6 3.6580 -0.6662 -0.0035 22 6 4.8981 -1.5226 -0.0076 23 6 2.3184 -1.1239 -0.0060 24 6 1.8737 -2.5209 -0.0129 25 8 2.6909 -3.4176 -0.0172 26 1 -0.3634 -0.0055 1.0277 27 1 -0.3634 0.8926 -0.5091 28 1 -0.3633 -0.8872 -0.5185 29 1 5.7807 0.1312 2.4003 30 1 5.3044 1.6320 3.2304 31 1 4.0987 0.7056 2.3047 32 1 8.6858 2.7790 1.5620 33 1 7.7770 1.5819 2.5151 34 1 8.0911 1.2905 0.7875 35 1 8.8936 5.6344 1.8771 36 1 5.1974 -1.7235 -1.0362 37 1 5.7026 -0.9995 0.5093 38 1 4.6911 -2.4641 0.5011 39 1 0.8187 -2.7517 -0.0141 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859194089.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:17 Heat of formation + Delta-G solvation = -32.866049 kcal Electronic energy + Delta-G solvation = -22025.387156 eV Core-core repulsion = 18740.917724 eV Total energy + Delta-G solvation = -3284.469431 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 5.33 seconds Orbital eigenvalues (eV) -41.58502 -38.81515 -38.24990 -35.37877 -33.26674 -32.60550 -31.79718 -29.53959 -28.16838 -26.54257 -25.80262 -25.26290 -24.11239 -21.78084 -19.98060 -19.27724 -18.64735 -17.17966 -16.46660 -16.22105 -15.86524 -15.04568 -14.83324 -14.65278 -14.36153 -14.08192 -13.64981 -13.18333 -13.13848 -13.05429 -12.86771 -12.47863 -12.45975 -12.27485 -12.04246 -11.67996 -11.51271 -11.34608 -11.11018 -10.89499 -10.75566 -10.32262 -10.22001 -9.67350 -9.30133 -9.19446 -8.80584 -8.49397 -7.95510 -7.68859 -6.13279 -4.22264 1.35033 2.12424 2.66264 3.22902 3.28661 3.28874 3.29732 3.51771 3.95991 4.33700 4.47285 4.54855 4.82705 5.03984 5.14222 5.18578 5.20690 5.43809 5.55352 5.74375 5.79846 5.83575 5.99389 6.06336 6.25030 6.34656 6.38598 6.71981 6.79729 6.82109 6.85518 7.01735 7.27932 7.35551 7.45840 7.64485 7.65970 7.94889 8.11567 8.40834 8.71807 8.90558 9.44161 10.91965 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025981 B = 0.004672 C = 0.004344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.436210 B = 5991.582683 C = 6443.990346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.095 3.905 3 N -0.510 5.510 4 H 0.422 0.578 5 C -0.028 4.028 6 C 0.572 3.428 7 O -0.542 6.542 8 N -0.575 5.575 9 C 0.084 3.916 10 C 0.258 3.742 11 H 0.064 0.936 12 C -0.147 4.147 13 C -0.530 4.530 14 H 0.059 0.941 15 C 0.066 3.934 16 N -0.885 5.885 17 Si 0.900 3.100 18 H -0.276 1.276 19 H -0.285 1.285 20 H -0.278 1.278 21 C -0.061 4.061 22 C -0.091 4.091 23 C -0.282 4.282 24 C 0.410 3.590 25 O -0.475 6.475 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.048 0.952 30 H 0.079 0.921 31 H 0.055 0.945 32 H 0.094 0.906 33 H 0.031 0.969 34 H 0.013 0.987 35 H 0.265 0.735 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.079 0.921 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.750 -10.008 -0.113 17.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.028 4.028 3 N -0.103 5.103 4 H 0.260 0.740 5 C -0.141 4.141 6 C 0.356 3.644 7 O -0.420 6.420 8 N -0.305 5.305 9 C -0.059 4.059 10 C 0.159 3.841 11 H 0.082 0.918 12 C -0.205 4.205 13 C -0.568 4.568 14 H 0.077 0.923 15 C -0.136 4.136 16 N -0.523 5.523 17 Si 0.728 3.272 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.203 1.203 21 C -0.067 4.067 22 C -0.149 4.149 23 C -0.290 4.290 24 C 0.270 3.730 25 O -0.350 6.350 26 H 0.101 0.899 27 H 0.091 0.909 28 H 0.106 0.894 29 H 0.066 0.934 30 H 0.097 0.903 31 H 0.074 0.926 32 H 0.113 0.887 33 H 0.050 0.950 34 H 0.032 0.968 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.098 0.902 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.905 -9.875 -0.653 17.067 hybrid contribution -0.428 1.407 0.777 1.663 sum -14.332 -8.468 0.123 16.647 Atomic orbital electron populations 1.20512 0.86958 1.04096 1.03584 1.20925 0.93414 0.85918 1.02555 1.41534 1.05285 1.08893 1.54633 0.73984 1.20047 0.84023 0.94261 1.15724 1.17163 0.82256 0.80674 0.84309 1.90797 1.69800 1.49186 1.32189 1.48221 1.34302 1.39207 1.08815 1.21631 0.99329 0.95680 0.89301 1.19023 0.81115 0.84670 0.99323 0.91849 1.22078 1.01502 0.99387 0.97555 1.21236 1.05901 1.08724 1.20958 0.92309 1.24883 0.94863 0.97675 0.96225 1.69868 1.10011 1.32347 1.40060 0.86533 0.77925 0.81172 0.81613 1.20180 1.21082 1.20319 1.19671 0.94733 0.90815 1.01488 1.20359 0.93183 0.98915 1.02394 1.20291 0.92968 0.94825 1.20893 1.22954 0.93893 0.85915 0.70203 1.90494 1.58652 1.49055 1.36772 0.89871 0.90892 0.89411 0.93363 0.90257 0.92580 0.88742 0.95013 0.96791 0.92509 0.91472 0.91731 0.90177 0.89129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.54 10.23 36.01 0.37 -0.18 16 2 C 0.09 1.02 7.22 -81.45 -0.59 0.43 16 3 N -0.51 -6.68 6.00 -5.55 -0.03 -6.71 16 4 H 0.42 4.70 8.96 -40.82 -0.37 4.33 16 5 C -0.03 -0.48 4.98 -82.40 -0.41 -0.90 16 6 C 0.57 12.21 7.07 -12.78 -0.09 12.12 16 7 O -0.54 -13.72 16.45 5.22 0.09 -13.63 16 8 N -0.58 -12.35 2.75 -176.75 -0.49 -12.84 16 9 C 0.08 1.49 8.92 59.84 0.53 2.02 16 10 C 0.26 6.55 2.63 -69.08 -0.18 6.36 16 11 H 0.06 1.86 6.91 -51.93 -0.36 1.50 16 12 C -0.15 -3.51 8.97 37.16 0.33 -3.18 16 13 C -0.53 -13.99 8.03 -34.44 -0.28 -14.27 16 14 H 0.06 1.52 7.26 -52.48 -0.38 1.13 16 15 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 16 N -0.89 -24.66 11.32 55.43 0.63 -24.03 16 17 Si 0.90 20.58 29.54 -169.99 -5.02 15.55 16 18 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 19 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 C -0.06 -0.98 5.83 -104.07 -0.61 -1.59 16 22 C -0.09 -1.44 9.65 36.01 0.35 -1.09 16 23 C -0.28 -3.67 6.13 -105.11 -0.64 -4.31 16 24 C 0.41 4.68 11.36 34.11 0.39 5.06 16 25 O -0.48 -7.15 15.82 5.53 0.09 -7.06 16 26 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.09 0.36 7.56 -51.93 -0.39 -0.03 16 29 H 0.05 0.79 7.50 -51.93 -0.39 0.40 16 30 H 0.08 1.44 6.97 -51.92 -0.36 1.08 16 31 H 0.06 0.88 6.49 -51.93 -0.34 0.55 16 32 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 33 H 0.03 0.70 7.67 -51.93 -0.40 0.30 16 34 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.06 1.05 6.89 -51.93 -0.36 0.69 16 38 H 0.08 1.21 6.62 -51.93 -0.34 0.87 16 39 H 0.09 0.62 7.59 -52.49 -0.40 0.22 16 LS Contribution 326.89 15.07 4.93 4.93 Total: -1.00 -33.18 326.89 -5.96 -39.15 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -5.23 Total: 2.47 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: -0.92 Total: 2.18 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: 0.11 Total: -43.58 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: 0.17 Total: -20.70 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.18 -5.96 -39.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859194089.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.279 kcal (2) G-P(sol) polarization free energy of solvation -33.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.33 seconds