Wall clock time and date at job start Tue Mar 31 2020 00:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.34115 * 125.82330 * 2 1 4 4 H 0.96998 * 125.34768 * 359.97324 * 3 2 1 5 5 C 1.37839 * 109.30241 * 179.83257 * 3 2 1 6 6 C 1.46848 * 125.80118 * 180.19418 * 5 3 2 7 7 O 1.21666 * 120.00233 * 283.74463 * 6 5 3 8 8 N 1.34779 * 119.99479 * 103.74919 * 6 5 3 9 9 C 1.46492 * 120.00303 * 4.97005 * 8 6 5 10 10 C 1.46502 * 119.99567 * 184.97362 * 8 6 5 11 11 H 1.09001 * 109.47381 * 359.97438 * 10 8 6 12 12 C 1.53002 * 109.47202 * 239.99833 * 10 8 6 13 13 C 1.50699 * 109.47444 * 119.99725 * 10 8 6 14 14 H 1.08011 * 119.99587 * 359.97438 * 13 10 8 15 15 C 1.37876 * 120.00516 * 179.97438 * 13 10 8 16 16 N 1.31506 * 119.99568 * 0.02562 * 15 13 10 17 17 Si 1.86797 * 120.00258 * 179.97438 * 15 13 10 18 18 H 1.48501 * 109.47054 * 60.00002 * 17 15 13 19 19 H 1.48493 * 109.47034 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47122 * 300.00461 * 17 15 13 21 21 C 1.36239 * 108.39603 * 0.43256 * 5 3 2 22 22 C 1.50701 * 126.50690 * 179.76690 * 21 5 3 23 23 C 1.38619 * 125.82884 * 180.30468 * 2 1 3 24 24 C 1.46616 * 126.51504 * 359.97438 * 23 2 1 25 25 O 1.21315 * 120.00051 * 180.02562 * 24 23 2 26 26 H 1.09006 * 109.47396 * 269.69392 * 1 2 3 27 27 H 1.08996 * 109.47439 * 29.69580 * 1 2 3 28 28 H 1.08995 * 109.47304 * 149.69400 * 1 2 3 29 29 H 1.08997 * 109.47380 * 94.44582 * 9 8 6 30 30 H 1.09007 * 109.47022 * 214.44181 * 9 8 6 31 31 H 1.09004 * 109.47427 * 334.44596 * 9 8 6 32 32 H 1.08997 * 109.47379 * 180.02562 * 12 10 8 33 33 H 1.09001 * 109.46834 * 300.00189 * 12 10 8 34 34 H 1.08996 * 109.46968 * 59.99911 * 12 10 8 35 35 H 0.97008 * 120.00411 * 180.02562 * 16 15 13 36 36 H 1.09002 * 109.46967 * 269.99596 * 22 21 5 37 37 H 1.09000 * 109.47566 * 29.99110 * 22 21 5 38 38 H 1.09000 * 109.47344 * 149.99923 * 22 21 5 39 39 H 1.08000 * 119.99628 * 0.02562 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2919 1.0874 0.0000 4 1 1.9789 2.0055 -0.0004 5 6 3.6134 0.6955 0.0038 6 6 4.7757 1.5930 0.0091 7 8 5.1076 2.1646 -1.0124 8 7 5.4747 1.7836 1.1455 9 6 5.1434 1.0138 2.3471 10 6 6.5659 2.7606 1.1791 11 1 6.6632 3.2304 0.2004 12 6 7.8740 2.0520 1.5365 13 6 6.2658 3.8135 2.2147 14 1 5.3532 3.7604 2.7900 15 6 7.1561 4.8445 2.4278 16 7 8.2669 4.9093 1.7270 17 14 6.7837 6.1499 3.7109 18 1 6.6504 5.5097 5.0442 19 1 7.8903 7.1394 3.7459 20 1 5.5144 6.8379 3.3632 21 6 3.6580 -0.6662 -0.0035 22 6 4.8981 -1.5226 -0.0076 23 6 2.3184 -1.1239 -0.0060 24 6 1.8737 -2.5209 -0.0129 25 8 2.6909 -3.4176 -0.0172 26 1 -0.3634 -0.0055 1.0277 27 1 -0.3634 0.8926 -0.5091 28 1 -0.3633 -0.8872 -0.5185 29 1 5.7807 0.1312 2.4003 30 1 5.3044 1.6320 3.2304 31 1 4.0987 0.7056 2.3047 32 1 8.6858 2.7790 1.5620 33 1 7.7770 1.5819 2.5151 34 1 8.0911 1.2905 0.7875 35 1 8.8936 5.6344 1.8771 36 1 5.1974 -1.7235 -1.0362 37 1 5.7026 -0.9995 0.5093 38 1 4.6911 -2.4641 0.5011 39 1 0.8187 -2.7517 -0.0141 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859194089.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:13 Heat of formation + Delta-G solvation = -55.537198 kcal Electronic energy + Delta-G solvation = -22026.370251 eV Core-core repulsion = 18740.917724 eV Total energy + Delta-G solvation = -3285.452526 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -42.69319 -40.40396 -39.28820 -37.23012 -34.95534 -33.96985 -32.75024 -31.35602 -29.12915 -27.95013 -27.37772 -27.13689 -25.17042 -23.29540 -21.34588 -20.38741 -19.93412 -18.73477 -18.29032 -17.73200 -17.12927 -16.57932 -16.20036 -15.90674 -15.61883 -15.39172 -14.75627 -14.57722 -14.39524 -14.26082 -14.12572 -13.86769 -13.62869 -13.59873 -13.19718 -13.12725 -13.06821 -12.92383 -12.75537 -12.72096 -12.39383 -12.23313 -12.15286 -11.27950 -11.08267 -10.56663 -10.48653 -9.88665 -9.48196 -9.04625 -8.17738 -6.35291 0.49981 0.89601 1.29433 1.42298 1.43087 1.51488 2.07824 2.36053 2.38251 2.58310 3.10584 3.53054 3.78819 3.81733 4.02035 4.16611 4.35762 4.52844 4.61826 4.70373 4.70709 4.73715 4.82962 4.86006 4.89573 4.93275 5.00304 5.04619 5.21986 5.30789 5.41137 5.48700 5.60282 5.70772 5.74703 5.95299 6.09459 6.37408 6.63378 6.70377 6.82053 7.14142 7.37513 8.87035 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025981 B = 0.004672 C = 0.004344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.436210 B = 5991.582683 C = 6443.990346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.139 3.861 3 N -0.510 5.510 4 H 0.430 0.570 5 C -0.066 4.066 6 C 0.571 3.429 7 O -0.596 6.596 8 N -0.579 5.579 9 C 0.088 3.912 10 C 0.262 3.738 11 H 0.011 0.989 12 C -0.133 4.133 13 C -0.541 4.541 14 H 0.064 0.936 15 C 0.017 3.983 16 N -0.916 5.916 17 Si 0.969 3.031 18 H -0.263 1.263 19 H -0.284 1.284 20 H -0.275 1.275 21 C -0.067 4.067 22 C -0.088 4.088 23 C -0.309 4.309 24 C 0.418 3.582 25 O -0.519 6.519 26 H 0.107 0.893 27 H 0.087 0.913 28 H 0.115 0.885 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.047 0.953 34 H 0.017 0.983 35 H 0.266 0.734 36 H 0.059 0.941 37 H 0.051 0.949 38 H 0.085 0.915 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.361 -10.919 1.367 21.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.015 3.985 3 N -0.105 5.105 4 H 0.269 0.731 5 C -0.177 4.177 6 C 0.358 3.642 7 O -0.478 6.478 8 N -0.308 5.308 9 C -0.054 4.054 10 C 0.161 3.839 11 H 0.029 0.971 12 C -0.192 4.192 13 C -0.579 4.579 14 H 0.082 0.918 15 C -0.183 4.183 16 N -0.555 5.555 17 Si 0.793 3.207 18 H -0.187 1.187 19 H -0.210 1.210 20 H -0.200 1.200 21 C -0.074 4.074 22 C -0.145 4.145 23 C -0.316 4.316 24 C 0.281 3.719 25 O -0.396 6.396 26 H 0.126 0.874 27 H 0.106 0.894 28 H 0.134 0.866 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.066 0.934 34 H 0.036 0.964 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.104 0.896 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -17.542 -10.803 0.856 20.620 hybrid contribution 0.616 1.658 0.261 1.788 sum -16.926 -9.145 1.117 19.271 Atomic orbital electron populations 1.20845 0.82449 1.06261 1.05733 1.21779 0.95511 0.84083 0.97130 1.41576 1.04009 1.10118 1.54811 0.73062 1.19303 0.84312 0.93657 1.20389 1.17739 0.83035 0.80245 0.83201 1.90748 1.71398 1.51671 1.33989 1.48174 1.33486 1.38804 1.10361 1.21742 1.00993 0.95356 0.87308 1.18646 0.83097 0.85734 0.96438 0.97073 1.21883 1.00114 0.98706 0.98458 1.21474 1.06121 1.09308 1.21029 0.91819 1.25752 0.94585 0.99772 0.98202 1.70018 1.10920 1.33047 1.41488 0.85454 0.77590 0.78290 0.79348 1.18741 1.20953 1.20002 1.19876 0.96261 0.90379 1.00872 1.20294 0.93256 0.99104 1.01812 1.20669 0.91722 0.96857 1.22317 1.23705 0.95887 0.84242 0.68050 1.90496 1.60282 1.49873 1.38926 0.87442 0.89412 0.86607 0.92156 0.90677 0.90361 0.91029 0.93426 0.96354 0.92503 0.92193 0.93039 0.89611 0.82967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.54 10.23 71.24 0.73 0.19 16 2 C 0.14 2.46 7.22 42.30 0.31 2.77 16 3 N -0.51 -12.45 6.00 -171.47 -1.03 -13.48 16 4 H 0.43 8.88 8.96 -92.71 -0.83 8.05 16 5 C -0.07 -2.24 4.98 39.99 0.20 -2.04 16 6 C 0.57 25.43 7.07 86.50 0.61 26.05 16 7 O -0.60 -32.20 16.45 -4.24 -0.07 -32.27 16 8 N -0.58 -25.68 2.75 -831.33 -2.29 -27.97 16 9 C 0.09 3.10 8.92 127.77 1.14 4.24 16 10 C 0.26 13.90 2.63 44.25 0.12 14.02 16 11 H 0.01 0.71 6.91 -2.39 -0.02 0.70 16 12 C -0.13 -6.61 8.97 71.98 0.65 -5.96 16 13 C -0.54 -29.15 8.03 25.60 0.21 -28.94 16 14 H 0.06 3.29 7.26 -2.91 -0.02 3.27 16 15 C 0.02 0.91 5.30 84.66 0.45 1.36 16 16 N -0.92 -52.58 11.32 21.45 0.24 -52.34 16 17 Si 0.97 42.23 29.54 68.60 2.03 44.26 16 18 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 19 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 20 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 21 C -0.07 -2.11 5.83 -19.51 -0.11 -2.23 16 22 C -0.09 -2.80 9.65 71.24 0.69 -2.12 16 23 C -0.31 -7.16 6.13 -20.18 -0.12 -7.29 16 24 C 0.42 7.98 11.36 70.01 0.80 8.77 16 25 O -0.52 -14.59 15.82 -3.14 -0.05 -14.64 16 26 H 0.11 0.27 8.14 -2.38 -0.02 0.25 16 27 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.12 0.12 7.56 -2.39 -0.02 0.11 16 29 H 0.06 1.95 7.50 -2.39 -0.02 1.93 16 30 H 0.07 2.69 6.97 -2.38 -0.02 2.67 16 31 H 0.08 2.39 6.49 -2.39 -0.02 2.37 16 32 H 0.07 3.90 6.07 -2.39 -0.01 3.88 16 33 H 0.05 2.15 7.67 -2.39 -0.02 2.13 16 34 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.27 14.46 8.31 -92.70 -0.77 13.69 16 36 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.05 1.73 6.89 -2.39 -0.02 1.71 16 38 H 0.09 2.61 6.62 -2.39 -0.02 2.59 16 39 H 0.15 1.09 7.59 -2.91 -0.02 1.07 16 Total: -1.00 -77.57 326.89 4.73 -72.84 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: 0.25 Total: 14.77 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: 5.65 Total: 8.82 kcal Atomic # 7 Polarization: -90.71 SS G_CDS: -3.08 Total: -93.79 kcal Atomic # 8 Polarization: -46.79 SS G_CDS: -0.12 Total: -46.91 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -77.57 4.73 -72.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859194089.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.308 kcal (2) G-P(sol) polarization free energy of solvation -77.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds