Wall clock time and date at job start Tue Mar 31 2020 00:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.34121 * 125.82541 * 2 1 4 4 H 0.96994 * 125.34243 * 0.02562 * 3 2 1 5 5 C 1.37840 * 109.30327 * 180.16691 * 3 2 1 6 6 C 1.46842 * 125.79810 * 179.82067 * 5 3 2 7 7 O 1.21669 * 120.00038 * 145.71614 * 6 5 3 8 8 N 1.34776 * 120.00015 * 325.71988 * 6 5 3 9 9 C 1.46501 * 119.99850 * 5.35155 * 8 6 5 10 10 C 1.46503 * 120.00209 * 185.35179 * 8 6 5 11 11 H 1.08998 * 109.46646 * 0.02562 * 10 8 6 12 12 C 1.52996 * 109.47025 * 119.99557 * 10 8 6 13 13 C 1.50701 * 109.47206 * 240.00041 * 10 8 6 14 14 H 1.07998 * 119.99934 * 359.97438 * 13 10 8 15 15 C 1.37878 * 119.99767 * 179.97438 * 13 10 8 16 16 N 1.31513 * 120.00066 * 0.02562 * 15 13 10 17 17 Si 1.86798 * 119.99876 * 179.97438 * 15 13 10 18 18 H 1.48503 * 109.46856 * 60.00012 * 17 15 13 19 19 H 1.48493 * 109.47296 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47349 * 300.00527 * 17 15 13 21 21 C 1.36235 * 108.39826 * 359.55643 * 5 3 2 22 22 C 1.50700 * 126.50652 * 180.23140 * 21 5 3 23 23 C 1.38614 * 125.83094 * 179.67846 * 2 1 3 24 24 C 1.46622 * 126.51427 * 0.02562 * 23 2 1 25 25 O 1.21324 * 119.99823 * 0.02562 * 24 23 2 26 26 H 1.09000 * 109.47858 * 270.31712 * 1 2 3 27 27 H 1.09004 * 109.47456 * 30.31911 * 1 2 3 28 28 H 1.09006 * 109.47077 * 150.31849 * 1 2 3 29 29 H 1.09000 * 109.47150 * 85.78772 * 9 8 6 30 30 H 1.08997 * 109.47222 * 325.78535 * 9 8 6 31 31 H 1.09005 * 109.46766 * 205.78876 * 9 8 6 32 32 H 1.08994 * 109.47600 * 300.00334 * 12 10 8 33 33 H 1.09002 * 109.47426 * 60.00680 * 12 10 8 34 34 H 1.09006 * 109.47305 * 179.97438 * 12 10 8 35 35 H 0.96996 * 119.99591 * 179.97438 * 16 15 13 36 36 H 1.08999 * 109.47717 * 89.99774 * 22 21 5 37 37 H 1.09008 * 109.46879 * 209.99843 * 22 21 5 38 38 H 1.09006 * 109.46849 * 329.99419 * 22 21 5 39 39 H 1.07997 * 120.00042 * 179.97438 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2919 1.0875 0.0000 4 1 1.9789 2.0055 0.0004 5 6 3.6134 0.6955 -0.0038 6 6 4.7756 1.5930 -0.0087 7 8 5.7911 1.2766 0.5819 8 7 4.7173 2.7674 -0.6675 9 6 3.4592 3.2024 -1.2792 10 6 5.9119 3.6089 -0.7718 11 1 6.7435 3.1242 -0.2603 12 6 6.2677 3.8088 -2.2464 13 6 5.6409 4.9473 -0.1344 14 1 4.6751 5.1509 0.3041 15 6 6.6258 5.9119 -0.1112 16 7 7.8016 5.6641 -0.6457 17 14 6.2896 7.5712 0.6782 18 1 5.9433 7.3774 2.1093 19 1 7.5005 8.4241 0.5726 20 1 5.1573 8.2313 -0.0200 21 6 3.6581 -0.6661 0.0038 22 6 4.8981 -1.5225 0.0079 23 6 2.3184 -1.1238 0.0063 24 6 1.8737 -2.5209 0.0136 25 8 0.6885 -2.7803 0.0141 26 1 -0.3635 0.0057 1.0276 27 1 -0.3634 0.8871 -0.5188 28 1 -0.3633 -0.8929 -0.5089 29 1 2.8547 3.7226 -0.5362 30 1 2.9142 2.3330 -1.6469 31 1 3.6726 3.8753 -2.1098 32 1 6.4637 2.8408 -2.7074 33 1 5.4363 4.2934 -2.7583 34 1 7.1563 4.4354 -2.3241 35 1 8.4943 6.3429 -0.6296 36 1 5.1977 -1.7233 1.0365 37 1 4.6910 -2.4642 -0.5006 38 1 5.7025 -0.9995 -0.5094 39 1 2.6011 -3.3191 0.0177 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859194091.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:29 Heat of formation + Delta-G solvation = -28.060931 kcal Electronic energy + Delta-G solvation = -21933.977110 eV Core-core repulsion = 18649.716045 eV Total energy + Delta-G solvation = -3284.261066 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.67822 -38.89265 -38.18876 -35.57341 -33.23613 -32.86718 -31.51983 -29.48352 -28.11938 -26.90896 -25.86736 -25.26985 -24.17752 -21.75943 -19.81067 -19.36649 -18.89292 -17.24707 -16.56473 -15.91612 -15.64426 -15.33667 -15.09128 -14.48965 -14.30751 -14.11797 -13.56745 -13.44033 -13.11697 -13.08098 -12.75184 -12.70032 -12.37879 -12.35393 -12.20775 -11.65403 -11.59222 -11.40774 -11.14016 -10.91448 -10.80247 -10.36106 -10.25463 -9.69097 -9.31710 -9.22383 -8.83091 -8.51163 -8.08914 -7.71432 -6.14849 -4.23596 1.35984 1.82927 2.93589 3.22097 3.23750 3.28116 3.29220 3.64667 3.86535 4.32929 4.47248 4.66033 4.93072 4.99769 5.16416 5.27289 5.36311 5.41124 5.43412 5.50905 5.71327 5.77460 5.92149 5.93921 6.03385 6.12458 6.31799 6.64774 6.68848 6.72736 6.84776 6.95098 7.23995 7.31690 7.41463 7.60916 7.61837 7.91429 8.08803 8.36018 8.71509 8.88056 9.43010 10.90414 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029775 B = 0.004390 C = 0.004085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.174397 B = 6376.587209 C = 6852.213463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.118 3.882 3 N -0.523 5.523 4 H 0.422 0.578 5 C -0.040 4.040 6 C 0.573 3.427 7 O -0.530 6.530 8 N -0.589 5.589 9 C 0.075 3.925 10 C 0.259 3.741 11 H 0.066 0.934 12 C -0.148 4.148 13 C -0.529 4.529 14 H 0.057 0.943 15 C 0.066 3.934 16 N -0.886 5.886 17 Si 0.899 3.101 18 H -0.277 1.277 19 H -0.285 1.285 20 H -0.277 1.277 21 C -0.048 4.048 22 C -0.087 4.087 23 C -0.290 4.290 24 C 0.414 3.586 25 O -0.488 6.488 26 H 0.080 0.920 27 H 0.067 0.933 28 H 0.100 0.900 29 H 0.045 0.955 30 H 0.053 0.947 31 H 0.084 0.916 32 H 0.013 0.987 33 H 0.030 0.970 34 H 0.096 0.904 35 H 0.265 0.735 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.636 -10.041 -1.759 15.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.005 4.005 3 N -0.121 5.121 4 H 0.263 0.737 5 C -0.150 4.150 6 C 0.359 3.641 7 O -0.407 6.407 8 N -0.320 5.320 9 C -0.069 4.069 10 C 0.159 3.841 11 H 0.084 0.916 12 C -0.206 4.206 13 C -0.567 4.567 14 H 0.075 0.925 15 C -0.136 4.136 16 N -0.524 5.524 17 Si 0.727 3.273 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.203 1.203 21 C -0.054 4.054 22 C -0.144 4.144 23 C -0.298 4.298 24 C 0.276 3.724 25 O -0.364 6.364 26 H 0.099 0.901 27 H 0.086 0.914 28 H 0.119 0.881 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.103 0.897 32 H 0.032 0.968 33 H 0.049 0.951 34 H 0.114 0.886 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -11.464 -10.032 -1.492 15.306 hybrid contribution -0.262 1.722 0.379 1.783 sum -11.725 -8.310 -1.113 14.414 Atomic orbital electron populations 1.20619 0.86795 1.04345 1.03623 1.21111 0.93793 0.85933 0.99698 1.42274 1.05881 1.09000 1.54942 0.73718 1.20299 0.83121 0.94536 1.17049 1.17129 0.85955 0.81023 0.80011 1.90797 1.31741 1.74305 1.43874 1.48225 1.12732 1.19056 1.51949 1.21753 0.86792 0.99473 0.98878 1.19007 0.82209 0.88932 0.93903 0.91603 1.22113 1.02812 0.98725 0.96967 1.21228 0.99474 0.97894 1.38140 0.92478 1.24880 0.94854 0.98742 0.95162 1.69856 1.03679 1.34692 1.44159 0.86542 0.77662 0.83212 0.79884 1.20237 1.21061 1.20268 1.19711 0.94346 0.91330 1.00029 1.20294 0.93736 0.97604 1.02802 1.20293 0.92692 0.95110 1.21675 1.23005 0.90320 0.89658 0.69389 1.90460 1.21198 1.86828 1.37922 0.90136 0.91417 0.88148 0.93651 0.92866 0.89748 0.96805 0.95134 0.88596 0.92507 0.90682 0.91821 0.90734 0.88542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.90 9.88 36.00 0.36 -0.55 16 2 C 0.12 1.46 7.22 -81.46 -0.59 0.87 16 3 N -0.52 -6.87 4.68 -5.55 -0.03 -6.90 16 4 H 0.42 4.71 6.54 -40.82 -0.27 4.45 16 5 C -0.04 -0.66 6.09 -82.41 -0.50 -1.16 16 6 C 0.57 11.82 7.36 -12.78 -0.09 11.72 16 7 O -0.53 -12.78 15.25 5.22 0.08 -12.70 16 8 N -0.59 -12.16 2.75 -176.75 -0.49 -12.64 16 9 C 0.08 1.19 8.27 59.85 0.49 1.69 16 10 C 0.26 6.41 2.63 -69.08 -0.18 6.23 16 11 H 0.07 1.89 6.91 -51.93 -0.36 1.53 16 12 C -0.15 -3.41 8.96 37.16 0.33 -3.08 16 13 C -0.53 -13.89 8.37 -34.44 -0.29 -14.18 16 14 H 0.06 1.47 7.65 -52.49 -0.40 1.07 16 15 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 16 N -0.89 -24.47 11.32 55.43 0.63 -23.84 16 17 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 21 C -0.05 -0.71 6.20 -104.07 -0.65 -1.35 16 22 C -0.09 -1.15 9.55 36.01 0.34 -0.81 16 23 C -0.29 -3.83 6.13 -105.11 -0.64 -4.47 16 24 C 0.41 4.80 11.46 34.11 0.39 5.20 16 25 O -0.49 -6.72 15.62 5.52 0.09 -6.64 16 26 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.10 1.02 6.47 -51.93 -0.34 0.68 16 29 H 0.05 0.65 7.53 -51.93 -0.39 0.26 16 30 H 0.05 0.71 5.86 -51.93 -0.30 0.40 16 31 H 0.08 1.36 6.43 -51.93 -0.33 1.03 16 32 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.03 0.64 6.66 -51.93 -0.35 0.30 16 34 H 0.10 2.44 6.07 -51.93 -0.32 2.12 16 35 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.06 0.63 7.76 -51.92 -0.40 0.23 16 38 H 0.07 1.13 7.43 -51.93 -0.39 0.74 16 39 H 0.10 0.81 7.75 -52.49 -0.41 0.41 16 LS Contribution 321.82 15.07 4.85 4.85 Total: -1.00 -31.67 321.82 -6.08 -37.75 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -5.07 Total: 2.76 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -1.12 Total: 1.79 kcal Atomic # 7 Polarization: -43.50 SS G_CDS: 0.11 Total: -43.38 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: 0.17 Total: -19.34 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.67 -6.08 -37.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859194091.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.692 kcal (2) G-P(sol) polarization free energy of solvation -31.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds