Wall clock time and date at job start Tue Mar 31 2020 00:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.34121 * 125.82541 * 2 1 4 4 H 0.96994 * 125.34243 * 0.02562 * 3 2 1 5 5 C 1.37840 * 109.30327 * 180.16691 * 3 2 1 6 6 C 1.46842 * 125.79810 * 179.82067 * 5 3 2 7 7 O 1.21669 * 120.00038 * 145.71614 * 6 5 3 8 8 N 1.34776 * 120.00015 * 325.71988 * 6 5 3 9 9 C 1.46501 * 119.99850 * 5.35155 * 8 6 5 10 10 C 1.46503 * 120.00209 * 185.35179 * 8 6 5 11 11 H 1.08998 * 109.46646 * 0.02562 * 10 8 6 12 12 C 1.52996 * 109.47025 * 119.99557 * 10 8 6 13 13 C 1.50701 * 109.47206 * 240.00041 * 10 8 6 14 14 H 1.07998 * 119.99934 * 359.97438 * 13 10 8 15 15 C 1.37878 * 119.99767 * 179.97438 * 13 10 8 16 16 N 1.31513 * 120.00066 * 0.02562 * 15 13 10 17 17 Si 1.86798 * 119.99876 * 179.97438 * 15 13 10 18 18 H 1.48503 * 109.46856 * 60.00012 * 17 15 13 19 19 H 1.48493 * 109.47296 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47349 * 300.00527 * 17 15 13 21 21 C 1.36235 * 108.39826 * 359.55643 * 5 3 2 22 22 C 1.50700 * 126.50652 * 180.23140 * 21 5 3 23 23 C 1.38614 * 125.83094 * 179.67846 * 2 1 3 24 24 C 1.46622 * 126.51427 * 0.02562 * 23 2 1 25 25 O 1.21324 * 119.99823 * 0.02562 * 24 23 2 26 26 H 1.09000 * 109.47858 * 270.31712 * 1 2 3 27 27 H 1.09004 * 109.47456 * 30.31911 * 1 2 3 28 28 H 1.09006 * 109.47077 * 150.31849 * 1 2 3 29 29 H 1.09000 * 109.47150 * 85.78772 * 9 8 6 30 30 H 1.08997 * 109.47222 * 325.78535 * 9 8 6 31 31 H 1.09005 * 109.46766 * 205.78876 * 9 8 6 32 32 H 1.08994 * 109.47600 * 300.00334 * 12 10 8 33 33 H 1.09002 * 109.47426 * 60.00680 * 12 10 8 34 34 H 1.09006 * 109.47305 * 179.97438 * 12 10 8 35 35 H 0.96996 * 119.99591 * 179.97438 * 16 15 13 36 36 H 1.08999 * 109.47717 * 89.99774 * 22 21 5 37 37 H 1.09008 * 109.46879 * 209.99843 * 22 21 5 38 38 H 1.09006 * 109.46849 * 329.99419 * 22 21 5 39 39 H 1.07997 * 120.00042 * 179.97438 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2919 1.0875 0.0000 4 1 1.9789 2.0055 0.0004 5 6 3.6134 0.6955 -0.0038 6 6 4.7756 1.5930 -0.0087 7 8 5.7911 1.2766 0.5819 8 7 4.7173 2.7674 -0.6675 9 6 3.4592 3.2024 -1.2792 10 6 5.9119 3.6089 -0.7718 11 1 6.7435 3.1242 -0.2603 12 6 6.2677 3.8088 -2.2464 13 6 5.6409 4.9473 -0.1344 14 1 4.6751 5.1509 0.3041 15 6 6.6258 5.9119 -0.1112 16 7 7.8016 5.6641 -0.6457 17 14 6.2896 7.5712 0.6782 18 1 5.9433 7.3774 2.1093 19 1 7.5005 8.4241 0.5726 20 1 5.1573 8.2313 -0.0200 21 6 3.6581 -0.6661 0.0038 22 6 4.8981 -1.5225 0.0079 23 6 2.3184 -1.1238 0.0063 24 6 1.8737 -2.5209 0.0136 25 8 0.6885 -2.7803 0.0141 26 1 -0.3635 0.0057 1.0276 27 1 -0.3634 0.8871 -0.5188 28 1 -0.3633 -0.8929 -0.5089 29 1 2.8547 3.7226 -0.5362 30 1 2.9142 2.3330 -1.6469 31 1 3.6726 3.8753 -2.1098 32 1 6.4637 2.8408 -2.7074 33 1 5.4363 4.2934 -2.7583 34 1 7.1563 4.4354 -2.3241 35 1 8.4943 6.3429 -0.6296 36 1 5.1977 -1.7233 1.0365 37 1 4.6910 -2.4642 -0.5006 38 1 5.7025 -0.9995 -0.5094 39 1 2.6011 -3.3191 0.0177 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859194091.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:27 Heat of formation + Delta-G solvation = -48.222308 kcal Electronic energy + Delta-G solvation = -21934.851373 eV Core-core repulsion = 18649.716045 eV Total energy + Delta-G solvation = -3285.135329 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 3.44 seconds Orbital eigenvalues (eV) -42.79589 -40.35654 -39.27041 -37.29147 -34.95055 -34.09647 -32.69302 -31.18431 -29.09269 -28.21580 -27.38976 -27.06553 -25.27583 -23.24003 -21.24931 -20.42551 -20.13581 -18.68122 -18.38857 -17.45663 -16.99653 -16.58001 -16.39612 -15.92541 -15.68507 -15.31885 -14.70694 -14.60676 -14.53511 -14.39207 -14.04279 -13.78135 -13.65897 -13.53584 -13.37609 -13.16387 -12.98615 -12.92894 -12.77134 -12.65526 -12.42459 -12.21720 -12.16346 -11.23857 -10.95612 -10.58291 -10.53429 -9.89630 -9.51884 -9.10159 -8.16879 -6.33932 0.42716 0.57694 1.40416 1.42509 1.49928 1.80556 2.09232 2.27381 2.37705 2.52557 3.11234 3.53522 3.70391 3.76958 4.04348 4.16043 4.26822 4.47098 4.48385 4.59170 4.63041 4.71246 4.83706 4.84686 4.88119 4.91869 5.00396 5.08646 5.12003 5.28879 5.41754 5.50801 5.61283 5.65154 5.77614 5.98651 6.11572 6.29634 6.67707 6.71676 6.72982 7.20744 7.39722 8.87250 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029775 B = 0.004390 C = 0.004085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.174397 B = 6376.587209 C = 6852.213463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.135 3.865 3 N -0.515 5.515 4 H 0.430 0.570 5 C -0.074 4.074 6 C 0.568 3.432 7 O -0.581 6.581 8 N -0.596 5.596 9 C 0.073 3.927 10 C 0.263 3.737 11 H 0.013 0.987 12 C -0.133 4.133 13 C -0.541 4.541 14 H 0.060 0.940 15 C 0.017 3.983 16 N -0.915 5.915 17 Si 0.964 3.036 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.262 1.262 21 C -0.041 4.041 22 C -0.089 4.089 23 C -0.305 4.305 24 C 0.421 3.579 25 O -0.509 6.509 26 H 0.092 0.908 27 H 0.093 0.907 28 H 0.096 0.904 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.021 0.979 33 H 0.048 0.952 34 H 0.070 0.930 35 H 0.265 0.735 36 H 0.076 0.924 37 H 0.101 0.899 38 H 0.046 0.954 39 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.479 -10.395 -1.968 17.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.010 3.990 3 N -0.114 5.114 4 H 0.273 0.727 5 C -0.184 4.184 6 C 0.357 3.643 7 O -0.462 6.462 8 N -0.326 5.326 9 C -0.069 4.069 10 C 0.162 3.838 11 H 0.031 0.969 12 C -0.192 4.192 13 C -0.579 4.579 14 H 0.078 0.922 15 C -0.183 4.183 16 N -0.554 5.554 17 Si 0.789 3.211 18 H -0.204 1.204 19 H -0.209 1.209 20 H -0.187 1.187 21 C -0.048 4.048 22 C -0.145 4.145 23 C -0.312 4.312 24 C 0.284 3.716 25 O -0.386 6.386 26 H 0.110 0.890 27 H 0.112 0.888 28 H 0.114 0.886 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.040 0.960 33 H 0.067 0.933 34 H 0.089 0.911 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.120 0.880 38 H 0.065 0.935 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -14.348 -10.373 -1.724 17.789 hybrid contribution 0.581 1.742 0.454 1.892 sum -13.767 -8.631 -1.270 16.298 Atomic orbital electron populations 1.20730 0.84285 1.05438 1.04661 1.21701 0.95131 0.85301 0.96823 1.42156 1.04608 1.09802 1.54844 0.72707 1.19700 0.83200 0.94303 1.21194 1.17651 0.86660 0.81079 0.78914 1.90752 1.34123 1.75346 1.45949 1.48172 1.13166 1.18893 1.52377 1.21979 0.85062 1.00799 0.99102 1.18598 0.82625 0.88548 0.94048 0.96913 1.21896 1.02285 0.98751 0.96246 1.21500 0.99640 0.98513 1.38258 0.92176 1.25710 0.94609 1.02313 0.95625 1.70003 1.04485 1.35743 1.45158 0.85519 0.77885 0.78959 0.78695 1.20425 1.20908 1.18650 1.20016 0.95661 0.90921 0.98181 1.20354 0.92433 0.98765 1.02997 1.20589 0.91812 0.96563 1.22246 1.23425 0.90517 0.89526 0.68084 1.90465 1.22297 1.86880 1.38998 0.88982 0.88786 0.88556 0.91798 0.90057 0.89956 0.96025 0.93321 0.91113 0.92547 0.90575 0.88047 0.93493 0.84720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.41 9.88 71.23 0.70 -0.71 16 2 C 0.14 2.94 7.22 42.30 0.31 3.25 16 3 N -0.52 -12.44 4.68 -171.49 -0.80 -13.24 16 4 H 0.43 8.51 6.54 -92.71 -0.61 7.91 16 5 C -0.07 -2.42 6.09 39.98 0.24 -2.17 16 6 C 0.57 24.15 7.36 86.49 0.64 24.78 16 7 O -0.58 -29.71 15.25 -4.25 -0.06 -29.78 16 8 N -0.60 -25.00 2.75 -831.33 -2.29 -27.29 16 9 C 0.07 2.22 8.27 127.77 1.06 3.27 16 10 C 0.26 13.52 2.63 44.24 0.12 13.63 16 11 H 0.01 0.79 6.91 -2.39 -0.02 0.78 16 12 C -0.13 -6.30 8.96 71.98 0.64 -5.66 16 13 C -0.54 -28.82 8.37 25.60 0.21 -28.60 16 14 H 0.06 3.09 7.65 -2.91 -0.02 3.06 16 15 C 0.02 0.94 5.30 84.65 0.45 1.39 16 16 N -0.92 -51.94 11.32 21.45 0.24 -51.70 16 17 Si 0.96 42.24 29.54 68.60 2.03 44.26 16 18 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 19 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 20 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 21 C -0.04 -1.16 6.20 -19.51 -0.12 -1.28 16 22 C -0.09 -2.28 9.55 71.24 0.68 -1.60 16 23 C -0.30 -7.26 6.13 -20.18 -0.12 -7.39 16 24 C 0.42 8.40 11.46 70.01 0.80 9.20 16 25 O -0.51 -12.52 15.62 -3.17 -0.05 -12.57 16 26 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 28 H 0.10 1.63 6.47 -2.38 -0.02 1.61 16 29 H 0.06 1.69 7.53 -2.39 -0.02 1.68 16 30 H 0.08 1.99 5.86 -2.39 -0.01 1.98 16 31 H 0.08 2.53 6.43 -2.38 -0.02 2.51 16 32 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.05 2.07 6.66 -2.39 -0.02 2.05 16 34 H 0.07 3.72 6.07 -2.38 -0.01 3.71 16 35 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 36 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.10 1.76 7.76 -2.38 -0.02 1.74 16 38 H 0.05 1.47 7.43 -2.38 -0.02 1.45 16 39 H 0.14 1.69 7.75 -2.91 -0.02 1.67 16 Total: -1.00 -71.79 321.82 5.15 -66.64 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: 0.48 Total: 15.55 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: 5.61 Total: 8.12 kcal Atomic # 7 Polarization: -89.38 SS G_CDS: -2.85 Total: -92.23 kcal Atomic # 8 Polarization: -42.23 SS G_CDS: -0.11 Total: -42.35 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.26 kcal Total: -71.79 5.15 -66.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859194091.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.418 kcal (2) G-P(sol) polarization free energy of solvation -71.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.44 seconds