Wall clock time and date at job start Tue Mar 31 2020 00:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34103 * 125.82481 * 2 1 4 4 H 0.97000 * 125.35333 * 0.02562 * 3 2 1 5 5 C 1.37848 * 109.30503 * 179.87190 * 3 2 1 6 6 C 1.46839 * 125.80605 * 180.16009 * 5 3 2 7 7 O 1.21672 * 120.00210 * 180.27964 * 6 5 3 8 8 N 1.34784 * 119.99773 * 0.27642 * 6 5 3 9 9 C 1.46497 * 119.99712 * 180.02562 * 8 6 5 10 10 C 1.53004 * 109.46779 * 180.02562 * 9 8 6 11 11 C 1.52996 * 109.47155 * 179.97438 * 10 9 8 12 12 C 1.50704 * 109.47516 * 179.97438 * 11 10 9 13 13 H 1.08004 * 119.99707 * 0.02562 * 12 11 10 14 14 C 1.37874 * 120.00463 * 180.02562 * 12 11 10 15 15 N 1.31510 * 120.00311 * 180.02562 * 14 12 11 16 16 Si 1.86806 * 119.99853 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.46889 * 90.00033 * 16 14 12 18 18 H 1.48491 * 109.47050 * 209.99925 * 16 14 12 19 19 H 1.48504 * 109.46856 * 330.00147 * 16 14 12 20 20 C 1.36244 * 108.39337 * 0.39665 * 5 3 2 21 21 C 1.50696 * 126.50949 * 179.78753 * 20 5 3 22 22 C 1.38623 * 125.82619 * 180.31025 * 2 1 3 23 23 C 1.46622 * 126.51607 * 359.95918 * 22 2 1 24 24 O 1.21319 * 120.00031 * 180.02562 * 23 22 2 25 25 H 1.09002 * 109.47152 * 269.68909 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.69009 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.68990 * 1 2 3 28 28 H 0.97004 * 119.99890 * 0.02562 * 8 6 5 29 29 H 1.09000 * 109.47190 * 299.99200 * 9 8 6 30 30 H 1.08993 * 109.47594 * 60.00363 * 9 8 6 31 31 H 1.09000 * 109.47296 * 299.99786 * 10 9 8 32 32 H 1.08996 * 109.47650 * 59.99758 * 10 9 8 33 33 H 1.09002 * 109.47418 * 299.99896 * 11 10 9 34 34 H 1.09005 * 109.47393 * 59.99771 * 11 10 9 35 35 H 0.97002 * 120.00255 * 180.02562 * 15 14 12 36 36 H 1.09004 * 109.47300 * 269.99961 * 21 20 5 37 37 H 1.09000 * 109.47118 * 29.99493 * 21 20 5 38 38 H 1.09000 * 109.47671 * 149.99682 * 21 20 5 39 39 H 1.08002 * 120.00074 * 0.02562 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2919 1.0873 0.0000 4 1 1.9790 2.0054 0.0004 5 6 3.6135 0.6954 0.0029 6 6 4.7757 1.5928 0.0072 7 8 5.9013 1.1307 0.0043 8 7 4.5957 2.9285 0.0142 9 6 5.7552 3.8239 0.0178 10 6 5.2772 5.2773 0.0263 11 6 6.4881 6.2124 0.0308 12 6 6.0173 7.6440 0.0385 13 1 4.9601 7.8648 0.0405 14 6 6.9362 8.6720 0.0431 15 7 6.5253 9.9212 0.0503 16 14 8.7648 8.2901 0.0404 17 1 9.2486 8.1957 -1.3604 18 1 9.4974 9.3724 0.7453 19 1 9.0017 6.9986 0.7341 20 6 3.6581 -0.6663 -0.0042 21 6 4.8980 -1.5228 -0.0085 22 6 2.3184 -1.1239 -0.0061 23 6 1.8737 -2.5211 -0.0128 24 8 2.6908 -3.4178 -0.0173 25 1 -0.3633 -0.0056 1.0277 26 1 -0.3633 -0.8872 -0.5186 27 1 -0.3633 0.8928 -0.5090 28 1 3.6983 3.2970 0.0168 29 1 6.3575 3.6348 0.9065 30 1 6.3561 3.6439 -0.8735 31 1 4.6746 5.4668 -0.8620 32 1 4.6765 5.4571 0.9178 33 1 7.0903 6.0229 0.9194 34 1 7.0892 6.0328 -0.8606 35 1 7.1718 10.6444 0.0531 36 1 5.1971 -1.7240 -1.0373 37 1 5.7028 -0.9997 0.5080 38 1 4.6912 -2.4642 0.5004 39 1 0.8186 -2.7519 -0.0138 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859199699.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:15 Heat of formation + Delta-G solvation = -52.424389 kcal Electronic energy + Delta-G solvation = -20583.259233 eV Core-core repulsion = 17297.941689 eV Total energy + Delta-G solvation = -3285.317545 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.98142 -39.27143 -38.56262 -35.71597 -33.55558 -33.06636 -32.30029 -31.36845 -28.49525 -27.81934 -26.25920 -24.47240 -22.87940 -21.41758 -20.61108 -19.86245 -19.29181 -18.38684 -16.85191 -16.45868 -15.91528 -15.73467 -15.18342 -15.16354 -14.77428 -14.22524 -14.07708 -13.88856 -13.69309 -13.51371 -13.21505 -13.14222 -12.75084 -12.56697 -12.41796 -12.08518 -11.98967 -11.74345 -11.17125 -10.95322 -10.34264 -10.09114 -9.94307 -9.81336 -9.62308 -9.29491 -9.17175 -9.06879 -8.60895 -8.40462 -6.11774 -4.11037 1.00307 1.35852 2.56817 2.90640 3.12939 3.27721 3.28929 3.35639 3.39513 4.17945 4.19705 4.39759 4.49300 4.67691 4.80588 4.94306 5.13837 5.22363 5.26679 5.41820 5.49855 5.54272 5.55558 5.84034 5.90778 6.01264 6.07263 6.22290 6.34329 6.35451 6.53995 6.58642 6.69197 6.87385 7.14975 7.28667 7.38781 7.46825 7.70004 8.14366 8.43847 8.91149 9.50365 11.01363 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.035096 B = 0.002912 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.617378 B = 9612.206016 C =10373.469404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.120 3.880 3 N -0.521 5.521 4 H 0.420 0.580 5 C -0.068 4.068 6 C 0.583 3.417 7 O -0.525 6.525 8 N -0.727 5.727 9 C 0.115 3.885 10 C -0.113 4.113 11 C -0.011 4.011 12 C -0.524 4.524 13 H 0.071 0.929 14 C 0.067 3.933 15 N -0.903 5.903 16 Si 0.880 3.120 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.264 1.264 20 C -0.012 4.012 21 C -0.097 4.097 22 C -0.292 4.292 23 C 0.409 3.591 24 O -0.470 6.470 25 H 0.087 0.913 26 H 0.091 0.909 27 H 0.076 0.924 28 H 0.392 0.608 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.019 0.981 34 H 0.015 0.985 35 H 0.264 0.736 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.788 -21.140 -0.033 25.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.004 4.004 3 N -0.117 5.117 4 H 0.259 0.741 5 C -0.178 4.178 6 C 0.370 3.630 7 O -0.401 6.401 8 N -0.377 5.377 9 C -0.007 4.007 10 C -0.151 4.151 11 C -0.049 4.049 12 C -0.562 4.562 13 H 0.089 0.911 14 C -0.134 4.134 15 N -0.541 5.541 16 Si 0.707 3.293 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.189 1.189 20 C -0.018 4.018 21 C -0.154 4.154 22 C -0.299 4.299 23 C 0.269 3.731 24 O -0.344 6.344 25 H 0.106 0.894 26 H 0.110 0.890 27 H 0.095 0.905 28 H 0.225 0.775 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.038 0.962 34 H 0.033 0.967 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -13.391 -21.566 -0.034 25.385 hybrid contribution 0.179 1.011 -0.046 1.028 sum -13.211 -20.555 -0.080 24.435 Atomic orbital electron populations 1.20613 0.86520 1.04585 1.04041 1.21085 0.93706 0.85879 0.99766 1.41701 1.05817 1.08829 1.55330 0.74129 1.20003 0.82706 0.94398 1.20652 1.17054 0.87331 0.81597 0.77004 1.90821 1.23232 1.75759 1.50331 1.46065 1.10632 1.05665 1.75352 1.21707 0.87119 0.89599 1.02319 1.21714 1.00778 0.90999 1.01631 1.19501 0.93440 0.95179 0.96766 1.21074 0.95203 0.88553 1.51349 0.91067 1.25026 0.99105 0.94928 0.94376 1.69905 1.34639 0.98742 1.50839 0.86773 0.85467 0.78422 0.78636 1.20197 1.21319 1.18860 1.19894 0.94929 0.90995 0.96018 1.20501 0.93530 0.98557 1.02801 1.20463 0.92963 0.95255 1.21268 1.22992 0.94116 0.85709 0.70310 1.90518 1.58632 1.48962 1.36316 0.89424 0.89031 0.90470 0.77532 0.91424 0.91421 0.92164 0.92138 0.96225 0.96664 0.92634 0.91117 0.89912 0.90573 0.88703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.26 10.23 36.01 0.37 0.11 16 2 C 0.12 0.84 7.22 -81.46 -0.59 0.25 16 3 N -0.52 -4.11 5.90 -5.55 -0.03 -4.14 16 4 H 0.42 2.07 8.13 -40.82 -0.33 1.74 16 5 C -0.07 -0.82 6.98 -82.40 -0.58 -1.39 16 6 C 0.58 8.48 7.79 -12.78 -0.10 8.38 16 7 O -0.52 -9.45 14.68 5.21 0.08 -9.37 16 8 N -0.73 -9.49 5.55 -61.57 -0.34 -9.83 16 9 C 0.11 1.82 5.67 -4.04 -0.02 1.80 16 10 C -0.11 -2.02 5.27 -26.73 -0.14 -2.16 16 11 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 12 C -0.52 -14.48 9.66 -34.44 -0.33 -14.81 16 13 H 0.07 2.09 7.99 -52.48 -0.42 1.67 16 14 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 15 N -0.90 -27.39 13.96 55.43 0.77 -26.62 16 16 Si 0.88 21.48 27.47 -169.99 -4.67 16.81 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 20 C -0.01 -0.15 6.21 -104.07 -0.65 -0.79 16 21 C -0.10 -1.29 9.27 36.00 0.33 -0.96 16 22 C -0.29 -2.87 6.13 -105.11 -0.64 -3.52 16 23 C 0.41 3.61 11.36 34.11 0.39 4.00 16 24 O -0.47 -6.03 15.82 5.52 0.09 -5.94 16 25 H 0.09 0.15 8.14 -51.93 -0.42 -0.28 16 26 H 0.09 0.11 7.56 -51.93 -0.39 -0.28 16 27 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 28 H 0.39 3.86 7.55 -40.82 -0.31 3.55 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 34 H 0.02 0.34 7.57 -51.93 -0.39 -0.05 16 35 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.08 1.20 6.40 -51.93 -0.33 0.87 16 38 H 0.08 1.00 6.62 -51.93 -0.34 0.65 16 39 H 0.10 0.40 7.59 -52.49 -0.40 0.00 16 LS Contribution 331.35 15.07 4.99 4.99 Total: -1.00 -35.68 331.35 -6.70 -42.38 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -5.42 Total: -0.67 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -2.17 Total: -7.61 kcal Atomic # 7 Polarization: -40.99 SS G_CDS: 0.40 Total: -40.59 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: 0.16 Total: -15.32 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -35.68 -6.70 -42.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859199699.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.040 kcal (2) G-P(sol) polarization free energy of solvation -35.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds