Wall clock time and date at job start Tue Mar 31 2020 00:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34103 * 125.82481 * 2 1 4 4 H 0.97000 * 125.35333 * 0.02562 * 3 2 1 5 5 C 1.37848 * 109.30503 * 179.87190 * 3 2 1 6 6 C 1.46839 * 125.80605 * 180.16009 * 5 3 2 7 7 O 1.21672 * 120.00210 * 180.27964 * 6 5 3 8 8 N 1.34784 * 119.99773 * 0.27642 * 6 5 3 9 9 C 1.46497 * 119.99712 * 180.02562 * 8 6 5 10 10 C 1.53004 * 109.46779 * 180.02562 * 9 8 6 11 11 C 1.52996 * 109.47155 * 179.97438 * 10 9 8 12 12 C 1.50704 * 109.47516 * 179.97438 * 11 10 9 13 13 H 1.08004 * 119.99707 * 0.02562 * 12 11 10 14 14 C 1.37874 * 120.00463 * 180.02562 * 12 11 10 15 15 N 1.31510 * 120.00311 * 180.02562 * 14 12 11 16 16 Si 1.86806 * 119.99853 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.46889 * 90.00033 * 16 14 12 18 18 H 1.48491 * 109.47050 * 209.99925 * 16 14 12 19 19 H 1.48504 * 109.46856 * 330.00147 * 16 14 12 20 20 C 1.36244 * 108.39337 * 0.39665 * 5 3 2 21 21 C 1.50696 * 126.50949 * 179.78753 * 20 5 3 22 22 C 1.38623 * 125.82619 * 180.31025 * 2 1 3 23 23 C 1.46622 * 126.51607 * 359.95918 * 22 2 1 24 24 O 1.21319 * 120.00031 * 180.02562 * 23 22 2 25 25 H 1.09002 * 109.47152 * 269.68909 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.69009 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.68990 * 1 2 3 28 28 H 0.97004 * 119.99890 * 0.02562 * 8 6 5 29 29 H 1.09000 * 109.47190 * 299.99200 * 9 8 6 30 30 H 1.08993 * 109.47594 * 60.00363 * 9 8 6 31 31 H 1.09000 * 109.47296 * 299.99786 * 10 9 8 32 32 H 1.08996 * 109.47650 * 59.99758 * 10 9 8 33 33 H 1.09002 * 109.47418 * 299.99896 * 11 10 9 34 34 H 1.09005 * 109.47393 * 59.99771 * 11 10 9 35 35 H 0.97002 * 120.00255 * 180.02562 * 15 14 12 36 36 H 1.09004 * 109.47300 * 269.99961 * 21 20 5 37 37 H 1.09000 * 109.47118 * 29.99493 * 21 20 5 38 38 H 1.09000 * 109.47671 * 149.99682 * 21 20 5 39 39 H 1.08002 * 120.00074 * 0.02562 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2919 1.0873 0.0000 4 1 1.9790 2.0054 0.0004 5 6 3.6135 0.6954 0.0029 6 6 4.7757 1.5928 0.0072 7 8 5.9013 1.1307 0.0043 8 7 4.5957 2.9285 0.0142 9 6 5.7552 3.8239 0.0178 10 6 5.2772 5.2773 0.0263 11 6 6.4881 6.2124 0.0308 12 6 6.0173 7.6440 0.0385 13 1 4.9601 7.8648 0.0405 14 6 6.9362 8.6720 0.0431 15 7 6.5253 9.9212 0.0503 16 14 8.7648 8.2901 0.0404 17 1 9.2486 8.1957 -1.3604 18 1 9.4974 9.3724 0.7453 19 1 9.0017 6.9986 0.7341 20 6 3.6581 -0.6663 -0.0042 21 6 4.8980 -1.5228 -0.0085 22 6 2.3184 -1.1239 -0.0061 23 6 1.8737 -2.5211 -0.0128 24 8 2.6908 -3.4178 -0.0173 25 1 -0.3633 -0.0056 1.0277 26 1 -0.3633 -0.8872 -0.5186 27 1 -0.3633 0.8928 -0.5090 28 1 3.6983 3.2970 0.0168 29 1 6.3575 3.6348 0.9065 30 1 6.3561 3.6439 -0.8735 31 1 4.6746 5.4668 -0.8620 32 1 4.6765 5.4571 0.9178 33 1 7.0903 6.0229 0.9194 34 1 7.0892 6.0328 -0.8606 35 1 7.1718 10.6444 0.0531 36 1 5.1971 -1.7240 -1.0373 37 1 5.7028 -0.9997 0.5080 38 1 4.6912 -2.4642 0.5004 39 1 0.8186 -2.7519 -0.0138 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859199699.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:14 Heat of formation + Delta-G solvation = -78.545391 kcal Electronic energy + Delta-G solvation = -20584.391925 eV Core-core repulsion = 17297.941689 eV Total energy + Delta-G solvation = -3286.450236 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.74502 -40.37224 -39.34946 -37.11295 -35.27010 -33.93793 -33.53239 -32.58266 -29.37316 -29.13703 -27.33233 -25.44527 -24.25884 -22.46933 -22.11068 -20.74865 -20.09372 -19.38143 -18.86718 -17.17025 -16.99845 -16.95216 -16.27508 -16.20983 -15.95902 -15.48943 -15.28018 -14.81904 -14.65817 -14.59548 -14.36012 -14.02142 -13.83996 -13.66515 -13.64139 -13.18967 -13.12708 -12.78235 -12.73618 -12.51272 -11.96456 -11.81351 -11.63238 -11.35963 -11.16035 -10.78008 -10.53471 -10.28258 -9.94814 -9.17864 -8.31330 -6.35123 0.34288 0.46540 1.35519 1.37575 1.48778 1.88198 2.07476 2.09352 2.34595 2.37127 3.04743 3.57065 3.75250 3.79078 3.93042 4.02357 4.15672 4.20827 4.44711 4.51987 4.68601 4.74393 4.80104 4.84392 4.84806 4.89140 5.00348 5.05944 5.22744 5.26043 5.30798 5.43541 5.52466 5.56623 5.62555 5.64344 6.24911 6.29423 6.46456 6.72903 6.76945 7.06286 7.30005 8.84907 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.035096 B = 0.002912 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.617378 B = 9612.206016 C =10373.469404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.161 3.839 3 N -0.511 5.511 4 H 0.436 0.564 5 C -0.089 4.089 6 C 0.582 3.418 7 O -0.569 6.569 8 N -0.715 5.715 9 C 0.127 3.873 10 C -0.099 4.099 11 C -0.013 4.013 12 C -0.530 4.530 13 H 0.040 0.960 14 C 0.006 3.994 15 N -0.950 5.950 16 Si 0.945 3.055 17 H -0.268 1.268 18 H -0.285 1.285 19 H -0.248 1.248 20 C -0.037 4.037 21 C -0.090 4.090 22 C -0.321 4.321 23 C 0.414 3.586 24 O -0.520 6.520 25 H 0.108 0.892 26 H 0.114 0.886 27 H 0.095 0.905 28 H 0.409 0.591 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.020 0.980 34 H 0.019 0.981 35 H 0.266 0.734 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.004 -22.235 -0.079 27.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.035 3.965 3 N -0.108 5.108 4 H 0.277 0.723 5 C -0.199 4.199 6 C 0.371 3.629 7 O -0.449 6.449 8 N -0.366 5.366 9 C 0.004 3.996 10 C -0.137 4.137 11 C -0.051 4.051 12 C -0.568 4.568 13 H 0.058 0.942 14 C -0.191 4.191 15 N -0.590 5.590 16 Si 0.769 3.231 17 H -0.193 1.193 18 H -0.211 1.211 19 H -0.172 1.172 20 C -0.045 4.045 21 C -0.147 4.147 22 C -0.328 4.328 23 C 0.277 3.723 24 O -0.397 6.397 25 H 0.126 0.874 26 H 0.132 0.868 27 H 0.114 0.886 28 H 0.245 0.755 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.039 0.961 34 H 0.038 0.962 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -15.663 -22.634 -0.081 27.525 hybrid contribution 0.693 1.376 -0.029 1.541 sum -14.969 -21.257 -0.110 25.999 Atomic orbital electron populations 1.20919 0.82438 1.06660 1.05874 1.21792 0.95563 0.84296 0.94872 1.41672 1.04298 1.10092 1.54723 0.72286 1.19505 0.83670 0.93636 1.23040 1.17384 0.87592 0.81894 0.76078 1.90795 1.25154 1.76503 1.52401 1.45799 1.10811 1.05041 1.74929 1.21357 0.87806 0.88785 1.01669 1.21478 0.98834 0.91054 1.02323 1.19471 0.95450 0.93357 0.96828 1.21451 0.93906 0.91196 1.50237 0.94204 1.25955 1.04221 0.94693 0.94251 1.70046 1.36382 0.99931 1.52669 0.85731 0.79411 0.78819 0.79155 1.19295 1.21076 1.17200 1.20098 0.96008 0.91539 0.96831 1.20342 0.93912 0.98452 1.02012 1.20776 0.92025 0.97081 1.22904 1.23778 0.95960 0.84482 0.68060 1.90514 1.60317 1.50044 1.38853 0.87413 0.86790 0.88630 0.75489 0.92228 0.92148 0.91475 0.91499 0.96128 0.96243 0.92493 0.91801 0.91867 0.90919 0.82936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.05 10.23 71.24 0.73 0.77 16 2 C 0.16 1.65 7.22 42.30 0.31 1.96 16 3 N -0.51 -6.63 5.90 -171.47 -1.01 -7.64 16 4 H 0.44 2.79 8.13 -92.71 -0.75 2.04 16 5 C -0.09 -2.08 6.98 39.98 0.28 -1.80 16 6 C 0.58 16.88 7.79 86.49 0.67 17.55 16 7 O -0.57 -21.17 14.68 -4.26 -0.06 -21.23 16 8 N -0.71 -17.84 5.55 -466.93 -2.59 -20.43 16 9 C 0.13 3.92 5.67 86.38 0.49 4.41 16 10 C -0.10 -3.40 5.27 30.59 0.16 -3.24 16 11 C -0.01 -0.58 4.04 29.85 0.12 -0.46 16 12 C -0.53 -29.45 9.66 25.60 0.25 -29.21 16 13 H 0.04 2.39 7.99 -2.91 -0.02 2.37 16 14 C 0.01 0.33 5.47 84.65 0.46 0.80 16 15 N -0.95 -58.60 13.96 21.45 0.30 -58.30 16 16 Si 0.95 43.99 27.47 68.60 1.88 45.87 16 17 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 18 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 19 H -0.25 -10.84 6.54 99.48 0.65 -10.19 16 20 C -0.04 -0.95 6.21 -19.51 -0.12 -1.07 16 21 C -0.09 -2.56 9.27 71.23 0.66 -1.90 16 22 C -0.32 -5.67 6.13 -20.18 -0.12 -5.79 16 23 C 0.41 6.34 11.36 70.01 0.80 7.14 16 24 O -0.52 -13.13 15.82 -3.15 -0.05 -13.18 16 25 H 0.11 -0.30 8.14 -2.39 -0.02 -0.32 16 26 H 0.11 -0.44 7.56 -2.39 -0.02 -0.46 16 27 H 0.09 -0.27 8.14 -2.38 -0.02 -0.29 16 28 H 0.41 7.20 7.55 -92.70 -0.70 6.50 16 29 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.02 0.91 7.20 -2.39 -0.02 0.90 16 34 H 0.02 0.85 7.57 -2.38 -0.02 0.83 16 35 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 36 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 37 H 0.06 2.00 6.40 -2.39 -0.02 1.98 16 38 H 0.07 2.04 6.62 -2.39 -0.02 2.03 16 39 H 0.15 0.54 7.59 -2.91 -0.02 0.52 16 Total: -1.00 -81.60 331.35 2.72 -78.87 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -0.43 Total: 6.88 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: 4.68 Total: -10.83 kcal Atomic # 7 Polarization: -83.07 SS G_CDS: -3.30 Total: -86.38 kcal Atomic # 8 Polarization: -34.30 SS G_CDS: -0.11 Total: -34.41 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.88 Total: 45.87 kcal Total: -81.60 2.72 -78.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859199699.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.328 kcal (2) G-P(sol) polarization free energy of solvation -81.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds