Wall clock time and date at job start Mon Mar 30 2020 23:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35900 * 116.99495 * 2 1 4 4 C 1.38810 * 120.02069 * 359.93106 * 3 2 1 5 5 C 1.38172 * 120.09322 * 179.97438 * 4 3 2 6 6 C 1.38155 * 120.13064 * 0.04775 * 5 4 3 7 7 C 1.38927 * 120.03516 * 0.02562 * 6 5 4 8 8 N 1.39672 * 120.04823 * 179.97438 * 7 6 5 9 9 C 1.46497 * 119.99706 * 0.02562 * 8 7 6 10 10 C 1.50699 * 109.46699 * 180.02562 * 9 8 7 11 11 O 1.21277 * 120.00288 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99749 * 180.02562 * 10 9 8 13 13 C 1.46500 * 120.00009 * 180.02562 * 12 10 9 14 14 C 1.50698 * 109.47359 * 179.97438 * 13 12 10 15 15 H 1.08008 * 119.99847 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00069 * 179.97438 * 14 13 12 17 17 N 1.31508 * 120.00343 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99685 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47274 * 60.00636 * 18 16 14 20 20 H 1.48503 * 109.46779 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47173 * 300.00106 * 18 16 14 22 22 C 1.38584 * 120.01583 * 179.97438 * 3 2 1 23 23 C 1.50697 * 120.06177 * 0.25615 * 22 3 2 24 24 H 1.08994 * 109.47635 * 299.99638 * 1 2 3 25 25 H 1.09004 * 109.47001 * 60.00449 * 1 2 3 26 26 H 1.09005 * 109.46814 * 179.97438 * 1 2 3 27 27 H 1.08003 * 119.95135 * 0.02675 * 4 3 2 28 28 H 1.08005 * 119.93194 * 180.02562 * 5 4 3 29 29 H 1.08004 * 119.98124 * 179.97438 * 6 5 4 30 30 H 0.97004 * 119.99763 * 180.02562 * 8 7 6 31 31 H 1.08999 * 109.47359 * 300.00196 * 9 8 7 32 32 H 1.09003 * 109.47249 * 60.00687 * 9 8 7 33 33 H 0.96996 * 119.99991 * 359.97438 * 12 10 9 34 34 H 1.08999 * 109.46804 * 299.99517 * 13 12 10 35 35 H 1.08999 * 109.47608 * 59.99080 * 13 12 10 36 36 H 0.96993 * 120.00320 * 179.97438 * 17 16 14 37 37 H 1.08999 * 109.46812 * 269.72025 * 23 22 3 38 38 H 1.08996 * 109.47545 * 29.72451 * 23 22 3 39 39 H 1.09001 * 109.47047 * 149.72387 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2902 2.3753 -0.0014 5 6 1.9158 3.6073 -0.0009 6 6 3.2952 3.6846 0.0001 7 6 4.0568 2.5227 0.0000 8 7 5.4513 2.6005 0.0004 9 6 6.1119 3.9081 0.0016 10 6 7.6065 3.7157 0.0012 11 8 8.0739 2.5966 0.0006 12 7 8.4239 4.7874 0.0026 13 6 9.8769 4.6004 0.0017 14 6 10.5565 5.9455 0.0030 15 1 9.9652 6.8493 0.0048 16 6 11.9332 6.0223 0.0030 17 7 12.6532 4.9219 0.0013 18 14 12.7755 7.6896 0.0038 19 1 12.3740 8.4464 1.2168 20 1 14.2483 7.5001 0.0030 21 1 12.3738 8.4478 -1.2082 22 6 3.4298 1.2840 0.0005 23 6 4.2523 0.0213 -0.0047 24 1 -0.3634 0.5137 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 0.2116 2.3181 -0.0021 28 1 1.3252 4.5116 -0.0016 29 1 3.7817 4.6488 0.0001 30 1 5.9824 1.7888 0.0000 31 1 5.8173 4.4648 -0.8881 32 1 5.8169 4.4634 0.8919 33 1 8.0501 5.6824 0.0035 34 1 10.1720 4.0430 0.8907 35 1 10.1714 4.0458 -0.8892 36 1 13.6216 4.9759 0.0009 37 1 4.4547 -0.2847 1.0217 38 1 3.7031 -0.7681 -0.5177 39 1 5.1944 0.2035 -0.5219 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000863359451.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:03 Heat of formation + Delta-G solvation = -55.026681 kcal Electronic energy + Delta-G solvation = -20575.283932 eV Core-core repulsion = 17289.853544 eV Total energy + Delta-G solvation = -3285.430389 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.37904 -39.16944 -37.90178 -34.90863 -34.22864 -32.69757 -32.38869 -29.56453 -27.93952 -27.75847 -26.70403 -25.67663 -22.71798 -21.62997 -21.14752 -19.86121 -18.26159 -17.59678 -16.56161 -16.01050 -15.91832 -15.56815 -15.34416 -15.32801 -14.98000 -14.66906 -14.00104 -13.82065 -13.35229 -13.17910 -13.05537 -12.73944 -12.49322 -12.12884 -12.07574 -11.97420 -11.79218 -11.38070 -11.27753 -11.05582 -10.91381 -10.86166 -10.38018 -9.97974 -9.48735 -9.29310 -8.80792 -8.19267 -8.02962 -7.39739 -6.21833 -4.29539 1.43268 1.59503 2.97745 3.14486 3.22320 3.27270 3.28571 3.51464 3.81716 4.06215 4.32019 4.74047 4.91179 4.94528 4.97020 5.07353 5.14346 5.22120 5.23947 5.32493 5.41773 5.44039 5.46853 5.68074 5.71944 5.77598 6.18946 6.27702 6.40105 6.48753 6.55461 7.16173 7.24561 7.30370 7.37602 7.42594 7.58007 7.80174 7.90095 8.47184 8.66856 8.92216 9.36966 10.88263 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.048066 B = 0.002713 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.392445 B =10318.557664 C =10869.898263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.316 6.316 3 C 0.168 3.832 4 C -0.268 4.268 5 C -0.039 4.039 6 C -0.232 4.232 7 C 0.258 3.742 8 N -0.726 5.726 9 C 0.102 3.898 10 C 0.493 3.507 11 O -0.553 6.553 12 N -0.705 5.705 13 C 0.250 3.750 14 C -0.546 4.546 15 H 0.063 0.937 16 C 0.064 3.936 17 N -0.885 5.885 18 Si 0.905 3.095 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 C -0.196 4.196 23 C -0.097 4.097 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.096 0.904 27 H 0.121 0.879 28 H 0.121 0.879 29 H 0.123 0.877 30 H 0.413 0.587 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.393 0.607 34 H 0.028 0.972 35 H 0.028 0.972 36 H 0.267 0.733 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.694 -4.137 -0.012 24.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.229 6.229 3 C 0.122 3.878 4 C -0.289 4.289 5 C -0.058 4.058 6 C -0.255 4.255 7 C 0.152 3.848 8 N -0.358 5.358 9 C -0.026 4.026 10 C 0.277 3.723 11 O -0.432 6.432 12 N -0.354 5.354 13 C 0.129 3.871 14 C -0.585 4.585 15 H 0.082 0.918 16 C -0.140 4.140 17 N -0.522 5.522 18 Si 0.732 3.268 19 H -0.200 1.200 20 H -0.210 1.210 21 H -0.200 1.200 22 C -0.202 4.202 23 C -0.154 4.154 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.114 0.886 27 H 0.139 0.861 28 H 0.139 0.861 29 H 0.141 0.859 30 H 0.253 0.747 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.226 0.774 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -22.905 -5.011 -0.014 23.447 hybrid contribution 0.293 1.295 -0.001 1.328 sum -22.612 -3.716 -0.015 22.915 Atomic orbital electron populations 1.23010 0.78700 1.03535 1.01312 1.86035 1.21037 1.27256 1.88577 1.18429 0.90997 0.83880 0.94458 1.20886 0.99400 0.92255 1.16369 1.20587 0.93754 0.96700 0.94740 1.20566 0.93860 0.96797 1.14298 1.17305 0.83319 0.92567 0.91583 1.44553 1.02496 1.08235 1.80499 1.21140 0.91438 0.86838 1.03189 1.20338 0.88188 0.85871 0.77936 1.90656 1.77131 1.24138 1.51303 1.46411 1.09737 1.07557 1.71654 1.19155 0.72487 0.97529 0.97913 1.21168 0.91825 0.91792 1.53665 0.91839 1.24956 0.97198 0.97252 0.94587 1.69954 1.06394 1.27293 1.48561 0.86449 0.78345 0.83247 0.78727 1.20018 1.21043 1.20023 1.18501 0.90906 0.94396 1.16349 1.20399 0.98581 0.94450 1.01921 0.92744 0.92765 0.88560 0.86144 0.86092 0.85891 0.74671 0.89485 0.89453 0.77378 0.95354 0.95361 0.92302 0.91908 0.91360 0.92088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.58 9.54 -19.43 -0.19 -3.77 16 3 C 0.17 2.10 6.66 -39.24 -0.26 1.83 16 4 C -0.27 -2.91 9.04 -39.39 -0.36 -3.27 16 5 C -0.04 -0.41 10.03 -39.64 -0.40 -0.81 16 6 C -0.23 -2.77 9.31 -39.36 -0.37 -3.13 16 7 C 0.26 3.51 6.63 -83.81 -0.56 2.95 16 8 N -0.73 -10.46 5.60 -59.83 -0.34 -10.79 16 9 C 0.10 1.40 5.39 -5.20 -0.03 1.37 16 10 C 0.49 9.28 7.90 -10.98 -0.09 9.19 16 11 O -0.55 -12.61 15.67 5.56 0.09 -12.53 16 12 N -0.71 -14.05 5.55 -61.47 -0.34 -14.39 16 13 C 0.25 6.43 5.43 -5.19 -0.03 6.40 16 14 C -0.55 -14.47 9.28 -34.44 -0.32 -14.78 16 15 H 0.06 1.56 7.60 -52.48 -0.40 1.16 16 16 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 17 N -0.88 -25.72 13.29 55.43 0.74 -24.98 16 18 Si 0.91 20.51 29.54 -169.99 -5.02 15.49 16 19 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 21 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 22 C -0.20 -2.64 5.91 -104.28 -0.62 -3.26 16 23 C -0.10 -1.21 9.35 36.00 0.34 -0.87 16 24 H 0.05 0.33 7.66 -51.93 -0.40 -0.06 16 25 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 26 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.12 1.02 6.29 -52.48 -0.33 0.69 16 28 H 0.12 0.97 8.06 -52.48 -0.42 0.54 16 29 H 0.12 1.27 6.73 -52.48 -0.35 0.92 16 30 H 0.41 6.47 5.44 -40.82 -0.22 6.25 16 31 H 0.09 1.02 7.95 -51.93 -0.41 0.61 16 32 H 0.09 1.03 7.95 -51.93 -0.41 0.61 16 33 H 0.39 6.54 8.32 -40.82 -0.34 6.20 16 34 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.27 7.30 8.31 -40.82 -0.34 6.97 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.81 7.53 -51.93 -0.39 0.42 16 39 H 0.06 0.77 6.56 -51.93 -0.34 0.43 16 LS Contribution 329.28 15.07 4.96 4.96 Total: -1.00 -32.00 329.28 -7.13 -39.13 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -5.24 Total: 8.41 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -1.78 Total: -1.53 kcal Atomic # 7 Polarization: -50.23 SS G_CDS: 0.06 Total: -50.17 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: -0.10 Total: -16.29 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.00 -7.13 -39.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863359451.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.898 kcal (2) G-P(sol) polarization free energy of solvation -32.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds