Wall clock time and date at job start Mon Mar 30 2020 23:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35900 * 116.99495 * 2 1 4 4 C 1.38810 * 120.02069 * 359.93106 * 3 2 1 5 5 C 1.38172 * 120.09322 * 179.97438 * 4 3 2 6 6 C 1.38155 * 120.13064 * 0.04775 * 5 4 3 7 7 C 1.38927 * 120.03516 * 0.02562 * 6 5 4 8 8 N 1.39672 * 120.04823 * 179.97438 * 7 6 5 9 9 C 1.46497 * 119.99706 * 0.02562 * 8 7 6 10 10 C 1.50699 * 109.46699 * 180.02562 * 9 8 7 11 11 O 1.21277 * 120.00288 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99749 * 180.02562 * 10 9 8 13 13 C 1.46500 * 120.00009 * 180.02562 * 12 10 9 14 14 C 1.50698 * 109.47359 * 179.97438 * 13 12 10 15 15 H 1.08008 * 119.99847 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00069 * 179.97438 * 14 13 12 17 17 N 1.31508 * 120.00343 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99685 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47274 * 60.00636 * 18 16 14 20 20 H 1.48503 * 109.46779 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47173 * 300.00106 * 18 16 14 22 22 C 1.38584 * 120.01583 * 179.97438 * 3 2 1 23 23 C 1.50697 * 120.06177 * 0.25615 * 22 3 2 24 24 H 1.08994 * 109.47635 * 299.99638 * 1 2 3 25 25 H 1.09004 * 109.47001 * 60.00449 * 1 2 3 26 26 H 1.09005 * 109.46814 * 179.97438 * 1 2 3 27 27 H 1.08003 * 119.95135 * 0.02675 * 4 3 2 28 28 H 1.08005 * 119.93194 * 180.02562 * 5 4 3 29 29 H 1.08004 * 119.98124 * 179.97438 * 6 5 4 30 30 H 0.97004 * 119.99763 * 180.02562 * 8 7 6 31 31 H 1.08999 * 109.47359 * 300.00196 * 9 8 7 32 32 H 1.09003 * 109.47249 * 60.00687 * 9 8 7 33 33 H 0.96996 * 119.99991 * 359.97438 * 12 10 9 34 34 H 1.08999 * 109.46804 * 299.99517 * 13 12 10 35 35 H 1.08999 * 109.47608 * 59.99080 * 13 12 10 36 36 H 0.96993 * 120.00320 * 179.97438 * 17 16 14 37 37 H 1.08999 * 109.46812 * 269.72025 * 23 22 3 38 38 H 1.08996 * 109.47545 * 29.72451 * 23 22 3 39 39 H 1.09001 * 109.47047 * 149.72387 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2902 2.3753 -0.0014 5 6 1.9158 3.6073 -0.0009 6 6 3.2952 3.6846 0.0001 7 6 4.0568 2.5227 0.0000 8 7 5.4513 2.6005 0.0004 9 6 6.1119 3.9081 0.0016 10 6 7.6065 3.7157 0.0012 11 8 8.0739 2.5966 0.0006 12 7 8.4239 4.7874 0.0026 13 6 9.8769 4.6004 0.0017 14 6 10.5565 5.9455 0.0030 15 1 9.9652 6.8493 0.0048 16 6 11.9332 6.0223 0.0030 17 7 12.6532 4.9219 0.0013 18 14 12.7755 7.6896 0.0038 19 1 12.3740 8.4464 1.2168 20 1 14.2483 7.5001 0.0030 21 1 12.3738 8.4478 -1.2082 22 6 3.4298 1.2840 0.0005 23 6 4.2523 0.0213 -0.0047 24 1 -0.3634 0.5137 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 0.2116 2.3181 -0.0021 28 1 1.3252 4.5116 -0.0016 29 1 3.7817 4.6488 0.0001 30 1 5.9824 1.7888 0.0000 31 1 5.8173 4.4648 -0.8881 32 1 5.8169 4.4634 0.8919 33 1 8.0501 5.6824 0.0035 34 1 10.1720 4.0430 0.8907 35 1 10.1714 4.0458 -0.8892 36 1 13.6216 4.9759 0.0009 37 1 4.4547 -0.2847 1.0217 38 1 3.7031 -0.7681 -0.5177 39 1 5.1944 0.2035 -0.5219 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000863359451.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:02 Heat of formation + Delta-G solvation = -77.892847 kcal Electronic energy + Delta-G solvation = -20576.275484 eV Core-core repulsion = 17289.853544 eV Total energy + Delta-G solvation = -3286.421940 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.29112 -40.61975 -38.85806 -36.32483 -35.68786 -34.41033 -33.57557 -30.72267 -29.44041 -28.44003 -27.91377 -26.80768 -24.56475 -22.66110 -22.07047 -21.41472 -19.40250 -18.83189 -18.00701 -17.35725 -17.00823 -16.78855 -16.57362 -16.45525 -16.21387 -15.97993 -15.32732 -15.03137 -14.50546 -14.33699 -14.15265 -14.05371 -13.90594 -13.65626 -13.34045 -12.95942 -12.92868 -12.79776 -12.67957 -12.26403 -12.22364 -12.06105 -11.66890 -11.52627 -10.94351 -10.89268 -10.80373 -9.90638 -9.06574 -8.36650 -8.29718 -6.46431 0.55562 0.70556 1.43899 1.47689 1.55814 1.61654 1.97882 2.35179 2.52570 2.82245 2.93562 3.05502 3.80974 3.96730 4.10858 4.20909 4.30583 4.37056 4.39840 4.46201 4.54295 4.62881 4.74664 4.75696 4.79855 4.80312 5.08048 5.21862 5.31162 5.34269 5.43922 5.51541 5.60987 5.66057 5.72638 5.82647 6.31784 6.54019 6.63275 6.68023 6.83109 7.21484 7.38893 8.82163 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.048066 B = 0.002713 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.392445 B =10318.557664 C =10869.898263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.335 6.335 3 C 0.158 3.842 4 C -0.267 4.267 5 C -0.037 4.037 6 C -0.239 4.239 7 C 0.241 3.759 8 N -0.739 5.739 9 C 0.119 3.881 10 C 0.491 3.509 11 O -0.598 6.598 12 N -0.699 5.699 13 C 0.266 3.734 14 C -0.557 4.557 15 H 0.087 0.913 16 C 0.003 3.997 17 N -0.931 5.931 18 Si 0.985 3.015 19 H -0.261 1.261 20 H -0.288 1.288 21 H -0.261 1.261 22 C -0.222 4.222 23 C -0.091 4.091 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.115 0.885 27 H 0.146 0.854 28 H 0.153 0.847 29 H 0.141 0.859 30 H 0.403 0.597 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.413 0.587 34 H -0.011 1.011 35 H -0.011 1.011 36 H 0.269 0.731 37 H 0.059 0.941 38 H 0.069 0.931 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.236 -1.549 -0.007 26.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.249 6.249 3 C 0.111 3.889 4 C -0.288 4.288 5 C -0.056 4.056 6 C -0.261 4.261 7 C 0.136 3.864 8 N -0.371 5.371 9 C -0.008 4.008 10 C 0.278 3.722 11 O -0.480 6.480 12 N -0.349 5.349 13 C 0.143 3.857 14 C -0.594 4.594 15 H 0.105 0.895 16 C -0.197 4.197 17 N -0.570 5.570 18 Si 0.808 3.192 19 H -0.186 1.186 20 H -0.213 1.213 21 H -0.186 1.186 22 C -0.228 4.228 23 C -0.148 4.148 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.133 0.867 27 H 0.163 0.837 28 H 0.170 0.830 29 H 0.159 0.841 30 H 0.241 0.759 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.249 0.751 34 H 0.007 0.993 35 H 0.007 0.993 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -25.530 -2.391 -0.009 25.642 hybrid contribution 0.943 0.378 -0.003 1.016 sum -24.587 -2.013 -0.011 24.669 Atomic orbital electron populations 1.23311 0.76528 1.05254 1.02285 1.86011 1.23337 1.27097 1.88450 1.18612 0.90882 0.84909 0.94459 1.21238 1.00693 0.91805 1.15046 1.20991 0.93535 0.97808 0.93240 1.20857 0.94539 0.96816 1.13929 1.17498 0.82792 0.93368 0.92710 1.44586 1.03006 1.07866 1.81627 1.21127 0.86643 0.87245 1.05828 1.21267 0.90427 0.84601 0.75931 1.90639 1.78509 1.26006 1.52840 1.46084 1.07543 1.09177 1.72116 1.18573 0.76057 0.96816 0.94260 1.21596 0.92413 0.92461 1.52957 0.89511 1.26072 0.98177 1.01552 0.93876 1.70124 1.06738 1.30214 1.49909 0.85205 0.76613 0.77846 0.79549 1.18584 1.21316 1.18597 1.18725 0.91871 0.94579 1.17617 1.20324 0.98194 0.94736 1.01592 0.91701 0.91709 0.86675 0.83684 0.82960 0.84130 0.75889 0.86590 0.86558 0.75058 0.99307 0.99311 0.92264 0.92216 0.91188 0.93031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.36 16 2 O -0.34 -7.25 9.54 -92.43 -0.88 -8.14 16 3 C 0.16 3.73 6.66 22.49 0.15 3.88 16 4 C -0.27 -5.07 9.04 22.39 0.20 -4.87 16 5 C -0.04 -0.66 10.03 22.23 0.22 -0.44 16 6 C -0.24 -5.03 9.31 22.42 0.21 -4.82 16 7 C 0.24 6.30 6.63 38.20 0.25 6.55 16 8 N -0.74 -21.01 5.60 -343.19 -1.92 -22.94 16 9 C 0.12 3.05 5.39 85.63 0.46 3.51 16 10 C 0.49 18.59 7.90 87.66 0.69 19.28 16 11 O -0.60 -28.49 15.67 -3.02 -0.05 -28.54 16 12 N -0.70 -27.86 5.55 -466.79 -2.59 -30.45 16 13 C 0.27 14.21 5.43 85.63 0.46 14.68 16 14 C -0.56 -29.49 9.28 25.60 0.24 -29.25 16 15 H 0.09 4.09 7.60 -2.91 -0.02 4.07 16 16 C 0.00 0.16 5.46 84.66 0.46 0.62 16 17 N -0.93 -55.68 13.29 21.45 0.28 -55.39 16 18 Si 0.98 41.57 29.54 68.60 2.03 43.60 16 19 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 20 H -0.29 -12.16 7.11 99.48 0.71 -11.45 16 21 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 22 C -0.22 -5.97 5.91 -19.64 -0.12 -6.08 16 23 C -0.09 -2.39 9.35 71.23 0.67 -1.73 16 24 H 0.06 0.63 7.66 -2.39 -0.02 0.61 16 25 H 0.06 0.63 7.66 -2.38 -0.02 0.61 16 26 H 0.12 0.89 8.14 -2.38 -0.02 0.87 16 27 H 0.15 1.94 6.29 -2.91 -0.02 1.92 16 28 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 29 H 0.14 2.36 6.73 -2.91 -0.02 2.34 16 30 H 0.40 13.10 5.44 -92.71 -0.50 12.59 16 31 H 0.12 2.35 7.95 -2.39 -0.02 2.34 16 32 H 0.12 2.36 7.95 -2.39 -0.02 2.34 16 33 H 0.41 13.03 8.32 -92.71 -0.77 12.26 16 34 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 35 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 36 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 37 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.07 1.73 7.53 -2.39 -0.02 1.71 16 39 H 0.05 1.40 6.56 -2.39 -0.02 1.39 16 Total: -1.00 -72.56 329.28 1.69 -70.87 By element: Atomic # 1 Polarization: 28.50 SS G_CDS: -0.19 Total: 28.31 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: 5.02 Total: 2.68 kcal Atomic # 7 Polarization: -104.55 SS G_CDS: -4.23 Total: -108.78 kcal Atomic # 8 Polarization: -35.75 SS G_CDS: -0.93 Total: -36.68 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Total: -72.56 1.69 -70.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863359451.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.021 kcal (2) G-P(sol) polarization free energy of solvation -72.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds