Wall clock time and date at job start Mon Mar 30 2020 23:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38262 * 120.00111 * 2 1 4 4 C 1.38211 * 120.00026 * 180.27706 * 3 2 1 5 5 C 1.38257 * 120.00103 * 359.50931 * 4 3 2 6 6 N 1.48015 * 120.00221 * 180.25370 * 5 4 3 7 7 O 1.21803 * 120.00247 * 353.41129 * 6 5 4 8 8 O 1.21802 * 120.00009 * 173.40435 * 6 5 4 9 9 C 1.38220 * 119.99560 * 0.27883 * 5 4 3 10 10 C 1.50706 * 119.99534 * 179.97438 * 9 5 4 11 11 C 1.38213 * 120.00097 * 179.83109 * 2 1 3 12 12 C 1.50698 * 119.99880 * 0.02562 * 11 2 1 13 13 N 1.46901 * 109.47202 * 269.97616 * 12 11 2 14 14 C 1.46899 * 110.99841 * 179.97438 * 13 12 11 15 15 C 1.53007 * 109.46950 * 180.02562 * 14 13 12 16 16 C 1.50691 * 109.47023 * 180.02562 * 15 14 13 17 17 H 1.08005 * 120.00594 * 359.97438 * 16 15 14 18 18 C 1.37882 * 119.99774 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00116 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99686 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47149 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.46942 * 119.99833 * 20 18 16 23 23 H 1.48505 * 109.46548 * 239.99426 * 20 18 16 24 24 H 1.08996 * 109.47361 * 270.17107 * 1 2 3 25 25 H 1.09004 * 109.46650 * 30.16555 * 1 2 3 26 26 H 1.09003 * 109.46882 * 150.16359 * 1 2 3 27 27 H 1.08001 * 120.00079 * 0.06643 * 3 2 1 28 28 H 1.08004 * 120.00199 * 179.79083 * 4 3 2 29 29 H 1.09001 * 109.46779 * 83.53990 * 10 9 5 30 30 H 1.08997 * 109.46820 * 203.53663 * 10 9 5 31 31 H 1.08996 * 109.47076 * 323.53427 * 10 9 5 32 32 H 1.09003 * 109.46850 * 29.97474 * 12 11 2 33 33 H 1.09001 * 109.46963 * 149.97549 * 12 11 2 34 34 H 1.00902 * 111.00079 * 56.04656 * 13 12 11 35 35 H 1.08998 * 109.47064 * 299.99604 * 14 13 12 36 36 H 1.09000 * 109.46955 * 60.00414 * 14 13 12 37 37 H 1.08998 * 109.47133 * 300.00607 * 15 14 13 38 38 H 1.09002 * 109.46656 * 59.99985 * 15 14 13 39 39 H 0.97002 * 119.99974 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0058 5 6 4.2717 0.0000 -0.0013 6 7 5.7519 0.0000 -0.0018 7 8 6.3609 1.0474 -0.1272 8 8 6.3609 -1.0473 0.1232 9 6 3.5806 -1.1969 0.0031 10 6 4.3342 -2.5021 0.0074 11 6 2.1981 -1.1969 0.0035 12 6 1.4446 -2.5020 0.0068 13 7 1.1997 -2.9226 1.3928 14 6 0.4649 -4.1939 1.4351 15 6 0.2286 -4.5982 2.8918 16 6 -0.5245 -5.9026 2.9352 17 1 -0.8069 -6.3941 2.0159 18 6 -0.8541 -6.4683 4.1487 19 7 -0.5107 -5.8696 5.2682 20 14 -1.7872 -8.0857 4.2025 21 1 -2.0523 -8.5506 2.8173 22 1 -0.9755 -9.1018 4.9194 23 1 -3.0761 -7.8901 4.9138 24 1 -0.3634 0.0031 1.0276 25 1 -0.3633 0.8886 -0.5164 26 1 -0.3633 -0.8915 -0.5113 27 1 1.6583 2.1327 0.0011 28 1 4.1205 2.1327 -0.0092 29 1 4.6163 -2.7553 1.0293 30 1 3.6997 -3.2892 -0.4000 31 1 5.2313 -2.4056 -0.6040 32 1 0.4921 -2.3729 -0.5074 33 1 2.0337 -3.2629 -0.5051 34 1 0.7107 -2.2054 1.9073 35 1 -0.4943 -4.0761 0.9311 36 1 1.0469 -4.9668 0.9331 37 1 1.1876 -4.7157 3.3964 38 1 -0.3535 -3.8251 3.3935 39 1 -0.7423 -6.2678 6.1219 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873105300.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:47:15 Heat of formation + Delta-G solvation = 10.347365 kcal Electronic energy + Delta-G solvation = -21139.056455 eV Core-core repulsion = 17856.460897 eV Total energy + Delta-G solvation = -3282.595557 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.27866 -40.21210 -36.69308 -36.25041 -34.12574 -33.56311 -32.32253 -29.53904 -28.82147 -27.68359 -25.59246 -24.98058 -23.53489 -21.51762 -21.24547 -20.65963 -18.68265 -18.63421 -17.61066 -16.63208 -16.40321 -15.60861 -15.26466 -14.87038 -14.48064 -14.26272 -13.71294 -13.67765 -13.40380 -13.06146 -12.88318 -12.67713 -12.31785 -12.20266 -12.09931 -11.87168 -11.42501 -11.26900 -11.13417 -11.05163 -10.99452 -10.60632 -10.54567 -10.10765 -9.59134 -9.37448 -9.26514 -9.07792 -8.42156 -8.01003 -6.06046 -4.09191 -0.20378 0.77406 1.26136 1.39959 3.03790 3.26990 3.34802 3.38115 4.12832 4.22384 4.32399 4.38397 4.54283 4.56205 4.86713 4.90501 5.12754 5.17645 5.26327 5.30266 5.35001 5.43079 5.50523 5.56567 5.67826 5.77901 5.91803 6.08543 6.09498 6.16247 6.19204 6.27792 6.53832 6.84760 7.27769 7.60294 7.65426 7.68126 7.81024 7.98832 8.34861 8.98139 9.55231 11.05282 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024660 B = 0.003431 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.177881 B = 8158.014621 C = 8818.117228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.022 4.022 3 C -0.130 4.130 4 C -0.052 4.052 5 C -0.060 4.060 6 N 0.036 4.964 7 O -0.180 6.180 8 O -0.157 6.157 9 C 0.015 3.985 10 C -0.134 4.134 11 C -0.083 4.083 12 C 0.090 3.910 13 N -0.682 5.682 14 C 0.066 3.934 15 C 0.025 3.975 16 C -0.523 4.523 17 H 0.055 0.945 18 C 0.058 3.942 19 N -0.892 5.892 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.284 1.284 24 H 0.087 0.913 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.144 0.856 28 H 0.149 0.851 29 H 0.096 0.904 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.044 0.956 33 H 0.087 0.913 34 H 0.337 0.663 35 H 0.018 0.982 36 H 0.061 0.939 37 H 0.026 0.974 38 H 0.013 0.987 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.329 14.467 -13.015 19.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.023 4.023 3 C -0.149 4.149 4 C -0.071 4.071 5 C -0.144 4.144 6 N 0.551 4.449 7 O -0.391 6.391 8 O -0.372 6.372 9 C 0.013 3.987 10 C -0.190 4.190 11 C -0.084 4.084 12 C -0.039 4.039 13 N -0.313 5.313 14 C -0.062 4.062 15 C -0.012 4.012 16 C -0.562 4.562 17 H 0.073 0.927 18 C -0.143 4.143 19 N -0.531 5.531 20 Si 0.720 3.280 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.210 1.210 24 H 0.105 0.895 25 H 0.094 0.906 26 H 0.099 0.901 27 H 0.162 0.838 28 H 0.167 0.833 29 H 0.115 0.885 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.062 0.938 33 H 0.105 0.895 34 H 0.154 0.846 35 H 0.036 0.964 36 H 0.080 0.920 37 H 0.044 0.956 38 H 0.032 0.968 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.243 14.145 -12.763 19.519 hybrid contribution -1.001 -0.436 -0.031 1.092 sum 3.243 13.709 -12.794 19.030 Atomic orbital electron populations 1.21067 0.89817 1.03923 1.03877 1.20279 0.97227 0.92349 0.92410 1.20981 0.92403 0.98555 1.02975 1.20944 0.94672 0.96785 0.94737 1.20901 0.78929 0.96571 1.17983 1.43566 1.03644 1.00226 0.97442 1.94509 1.69196 1.21302 1.54052 1.94490 1.69511 1.20593 1.52619 1.19725 0.93540 0.94376 0.91070 1.21379 1.00313 0.92191 1.05070 1.19673 0.91626 0.95808 1.01331 1.21018 0.97845 0.92186 0.92846 1.60675 1.54030 1.06698 1.09924 1.22216 0.93766 0.88506 1.01707 1.19069 0.97361 0.95918 0.88856 1.21182 1.36122 1.06560 0.92311 0.92671 1.25006 0.96024 0.97573 0.95722 1.69978 1.46673 1.39111 0.97355 0.86530 0.79598 0.83748 0.78081 1.19752 1.20909 1.21026 0.89482 0.90610 0.90146 0.83820 0.83290 0.88533 0.90210 0.89006 0.93785 0.89500 0.84571 0.96422 0.92041 0.95569 0.96849 0.92975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.01 9.60 36.00 0.35 -0.66 16 2 C -0.02 -0.21 5.88 -104.62 -0.62 -0.83 16 3 C -0.13 -1.13 9.70 -39.58 -0.38 -1.51 16 4 C -0.05 -0.53 9.56 -39.58 -0.38 -0.91 16 5 C -0.06 -0.76 6.83 -79.95 -0.55 -1.31 16 6 N 0.04 0.51 4.45 33.96 0.15 0.67 16 7 O -0.18 -2.61 18.47 -29.46 -0.54 -3.16 16 8 O -0.16 -2.34 15.36 -29.46 -0.45 -2.79 16 9 C 0.01 0.19 5.88 -104.62 -0.62 -0.43 16 10 C -0.13 -1.65 8.39 36.01 0.30 -1.35 16 11 C -0.08 -0.97 5.39 -104.63 -0.56 -1.53 16 12 C 0.09 1.12 4.98 -4.98 -0.02 1.09 16 13 N -0.68 -10.86 6.49 -115.05 -0.75 -11.61 16 14 C 0.07 1.27 5.62 -3.82 -0.02 1.25 16 15 C 0.03 0.63 5.23 -27.88 -0.15 0.49 16 16 C -0.52 -14.38 9.11 -34.44 -0.31 -14.69 16 17 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -26.42 13.29 55.43 0.74 -25.68 16 20 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 21 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.08 0.43 8.09 -51.93 -0.42 0.01 16 26 H 0.08 0.64 5.95 -51.93 -0.31 0.33 16 27 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 28 H 0.15 1.27 7.63 -52.48 -0.40 0.87 16 29 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.08 0.92 5.71 -51.93 -0.30 0.62 16 31 H 0.09 1.11 5.84 -51.93 -0.30 0.81 16 32 H 0.04 0.50 5.95 -51.93 -0.31 0.19 16 33 H 0.09 1.07 5.89 -51.93 -0.31 0.76 16 34 H 0.34 5.22 8.72 -39.29 -0.34 4.88 16 35 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 327.29 15.07 4.93 4.93 Total: -1.00 -30.72 327.29 -9.19 -39.91 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -5.19 Total: 0.39 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: -3.06 Total: -18.85 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: 0.14 Total: -36.62 kcal Atomic # 8 Polarization: -4.95 SS G_CDS: -1.00 Total: -5.95 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.72 -9.19 -39.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873105300.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.257 kcal (2) G-P(sol) polarization free energy of solvation -30.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds