Wall clock time and date at job start Mon Mar 30 2020 23:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38262 * 120.00111 * 2 1 4 4 C 1.38211 * 120.00026 * 180.27706 * 3 2 1 5 5 C 1.38257 * 120.00103 * 359.50931 * 4 3 2 6 6 N 1.48015 * 120.00221 * 180.25370 * 5 4 3 7 7 O 1.21803 * 120.00247 * 353.41129 * 6 5 4 8 8 O 1.21802 * 120.00009 * 173.40435 * 6 5 4 9 9 C 1.38220 * 119.99560 * 0.27883 * 5 4 3 10 10 C 1.50706 * 119.99534 * 179.97438 * 9 5 4 11 11 C 1.38213 * 120.00097 * 179.83109 * 2 1 3 12 12 C 1.50698 * 119.99880 * 0.02562 * 11 2 1 13 13 N 1.46901 * 109.47202 * 269.97616 * 12 11 2 14 14 C 1.46899 * 110.99841 * 179.97438 * 13 12 11 15 15 C 1.53007 * 109.46950 * 180.02562 * 14 13 12 16 16 C 1.50691 * 109.47023 * 180.02562 * 15 14 13 17 17 H 1.08005 * 120.00594 * 359.97438 * 16 15 14 18 18 C 1.37882 * 119.99774 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00116 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99686 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47149 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.46942 * 119.99833 * 20 18 16 23 23 H 1.48505 * 109.46548 * 239.99426 * 20 18 16 24 24 H 1.08996 * 109.47361 * 270.17107 * 1 2 3 25 25 H 1.09004 * 109.46650 * 30.16555 * 1 2 3 26 26 H 1.09003 * 109.46882 * 150.16359 * 1 2 3 27 27 H 1.08001 * 120.00079 * 0.06643 * 3 2 1 28 28 H 1.08004 * 120.00199 * 179.79083 * 4 3 2 29 29 H 1.09001 * 109.46779 * 83.53990 * 10 9 5 30 30 H 1.08997 * 109.46820 * 203.53663 * 10 9 5 31 31 H 1.08996 * 109.47076 * 323.53427 * 10 9 5 32 32 H 1.09003 * 109.46850 * 29.97474 * 12 11 2 33 33 H 1.09001 * 109.46963 * 149.97549 * 12 11 2 34 34 H 1.00902 * 111.00079 * 56.04656 * 13 12 11 35 35 H 1.08998 * 109.47064 * 299.99604 * 14 13 12 36 36 H 1.09000 * 109.46955 * 60.00414 * 14 13 12 37 37 H 1.08998 * 109.47133 * 300.00607 * 15 14 13 38 38 H 1.09002 * 109.46656 * 59.99985 * 15 14 13 39 39 H 0.97002 * 119.99974 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0058 5 6 4.2717 0.0000 -0.0013 6 7 5.7519 0.0000 -0.0018 7 8 6.3609 1.0474 -0.1272 8 8 6.3609 -1.0473 0.1232 9 6 3.5806 -1.1969 0.0031 10 6 4.3342 -2.5021 0.0074 11 6 2.1981 -1.1969 0.0035 12 6 1.4446 -2.5020 0.0068 13 7 1.1997 -2.9226 1.3928 14 6 0.4649 -4.1939 1.4351 15 6 0.2286 -4.5982 2.8918 16 6 -0.5245 -5.9026 2.9352 17 1 -0.8069 -6.3941 2.0159 18 6 -0.8541 -6.4683 4.1487 19 7 -0.5107 -5.8696 5.2682 20 14 -1.7872 -8.0857 4.2025 21 1 -2.0523 -8.5506 2.8173 22 1 -0.9755 -9.1018 4.9194 23 1 -3.0761 -7.8901 4.9138 24 1 -0.3634 0.0031 1.0276 25 1 -0.3633 0.8886 -0.5164 26 1 -0.3633 -0.8915 -0.5113 27 1 1.6583 2.1327 0.0011 28 1 4.1205 2.1327 -0.0092 29 1 4.6163 -2.7553 1.0293 30 1 3.6997 -3.2892 -0.4000 31 1 5.2313 -2.4056 -0.6040 32 1 0.4921 -2.3729 -0.5074 33 1 2.0337 -3.2629 -0.5051 34 1 0.7107 -2.2054 1.9073 35 1 -0.4943 -4.0761 0.9311 36 1 1.0469 -4.9668 0.9331 37 1 1.1876 -4.7157 3.3964 38 1 -0.3535 -3.8251 3.3935 39 1 -0.7423 -6.2678 6.1219 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873105300.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:47:14 Heat of formation + Delta-G solvation = -7.455649 kcal Electronic energy + Delta-G solvation = -21139.828451 eV Core-core repulsion = 17856.460897 eV Total energy + Delta-G solvation = -3283.367554 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.31781 -41.09700 -37.77727 -37.56000 -35.30038 -34.92571 -33.74641 -31.14117 -29.67939 -28.74806 -26.99336 -25.88227 -25.13124 -22.50711 -22.40053 -22.10815 -19.73280 -19.60327 -18.67164 -18.50293 -17.58574 -16.66348 -16.36497 -16.26318 -15.95918 -15.37064 -14.81932 -14.64495 -14.33811 -14.17614 -14.05340 -13.87225 -13.78559 -13.20966 -13.11915 -12.95974 -12.88234 -12.68591 -12.54049 -12.39276 -12.25294 -12.04983 -11.88692 -11.61136 -11.41287 -11.26831 -10.56984 -10.21556 -10.03678 -9.28606 -8.20426 -6.31510 -1.19157 -0.05548 0.29100 0.42382 1.40668 1.41747 1.54288 2.19425 2.40920 3.13817 3.22743 3.40322 3.47253 3.58259 3.79095 3.84212 4.05102 4.31293 4.34728 4.48844 4.53499 4.57212 4.60897 4.67566 4.68800 4.77622 4.81155 5.00597 5.07796 5.10328 5.11728 5.30200 5.34439 5.45331 5.60813 5.67232 5.77856 6.10331 6.24170 6.48008 6.54140 6.86770 7.38217 8.91750 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024660 B = 0.003431 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.177881 B = 8158.014621 C = 8818.117228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.013 4.013 3 C -0.118 4.118 4 C -0.049 4.049 5 C -0.080 4.080 6 N 0.037 4.963 7 O -0.183 6.183 8 O -0.188 6.188 9 C 0.000 4.000 10 C -0.130 4.130 11 C -0.096 4.096 12 C 0.094 3.906 13 N -0.690 5.690 14 C 0.086 3.914 15 C 0.031 3.969 16 C -0.541 4.541 17 H 0.063 0.937 18 C 0.000 4.000 19 N -0.932 5.932 20 Si 0.965 3.035 21 H -0.260 1.260 22 H -0.281 1.281 23 H -0.278 1.278 24 H 0.088 0.912 25 H 0.103 0.897 26 H 0.078 0.922 27 H 0.184 0.816 28 H 0.167 0.833 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.339 0.661 35 H 0.028 0.972 36 H 0.060 0.940 37 H -0.009 1.009 38 H -0.008 1.008 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.477 15.497 -14.388 21.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.014 4.014 3 C -0.136 4.136 4 C -0.068 4.068 5 C -0.164 4.164 6 N 0.547 4.453 7 O -0.396 6.396 8 O -0.397 6.397 9 C -0.002 4.002 10 C -0.186 4.186 11 C -0.097 4.097 12 C -0.034 4.034 13 N -0.321 5.321 14 C -0.043 4.043 15 C -0.007 4.007 16 C -0.580 4.580 17 H 0.081 0.919 18 C -0.198 4.198 19 N -0.573 5.573 20 Si 0.789 3.211 21 H -0.184 1.184 22 H -0.207 1.207 23 H -0.204 1.204 24 H 0.106 0.894 25 H 0.122 0.878 26 H 0.096 0.904 27 H 0.201 0.799 28 H 0.185 0.815 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.108 0.892 32 H 0.082 0.918 33 H 0.105 0.895 34 H 0.157 0.843 35 H 0.046 0.954 36 H 0.079 0.921 37 H 0.009 0.991 38 H 0.011 0.989 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.419 15.147 -14.154 20.872 hybrid contribution -0.462 -0.631 0.386 0.872 sum 1.956 14.517 -13.768 20.103 Atomic orbital electron populations 1.21157 0.88056 1.05269 1.04257 1.20609 0.98465 0.91911 0.90450 1.21422 0.91658 0.99715 1.00806 1.21311 0.95513 0.96465 0.93531 1.21121 0.77630 0.97727 1.19918 1.43858 1.04547 0.99894 0.96963 1.94474 1.69891 1.21286 1.53901 1.94487 1.70290 1.20811 1.54096 1.19781 0.94140 0.94249 0.92005 1.21285 1.00483 0.92850 1.03938 1.19620 0.91109 0.96237 1.02762 1.21000 0.98936 0.92803 0.90677 1.60517 1.53382 1.05670 1.12575 1.21787 0.94693 0.90197 0.97601 1.18923 0.94788 0.94817 0.92147 1.21649 1.36069 1.07554 0.92705 0.91925 1.25960 0.97009 1.01433 0.95354 1.70113 1.48065 1.41037 0.98040 0.85403 0.78087 0.78929 0.78637 1.18381 1.20677 1.20402 0.89374 0.87798 0.90354 0.79881 0.81527 0.90328 0.89681 0.89234 0.91762 0.89546 0.84273 0.95373 0.92137 0.99087 0.98920 0.92834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.53 9.60 71.24 0.68 -0.85 16 2 C -0.01 -0.22 5.88 -19.87 -0.12 -0.33 16 3 C -0.12 -1.58 9.70 22.27 0.22 -1.36 16 4 C -0.05 -0.88 9.56 22.27 0.21 -0.66 16 5 C -0.08 -1.97 6.83 36.38 0.25 -1.72 16 6 N 0.04 1.06 4.45 -46.46 -0.21 0.85 16 7 O -0.18 -5.31 18.47 18.88 0.35 -4.96 16 8 O -0.19 -5.85 15.36 18.88 0.29 -5.56 16 9 C 0.00 0.01 5.88 -19.86 -0.12 -0.11 16 10 C -0.13 -3.33 8.39 71.24 0.60 -2.73 16 11 C -0.10 -2.09 5.39 -19.87 -0.11 -2.19 16 12 C 0.09 2.20 4.98 85.56 0.43 2.63 16 13 N -0.69 -21.62 6.49 -517.92 -3.36 -24.98 16 14 C 0.09 3.27 5.62 86.31 0.49 3.76 16 15 C 0.03 1.57 5.23 29.85 0.16 1.73 16 16 C -0.54 -29.91 9.11 25.60 0.23 -29.68 16 17 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 18 C 0.00 0.02 5.46 84.66 0.46 0.48 16 19 N -0.93 -56.19 13.29 21.45 0.28 -55.90 16 20 Si 0.96 43.38 29.54 68.60 2.03 45.40 16 21 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 22 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 23 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 24 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.10 0.67 8.09 -2.38 -0.02 0.65 16 26 H 0.08 0.98 5.95 -2.39 -0.01 0.97 16 27 H 0.18 1.04 8.06 -2.91 -0.02 1.01 16 28 H 0.17 2.35 7.63 -2.91 -0.02 2.33 16 29 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.08 2.01 5.71 -2.39 -0.01 1.99 16 31 H 0.09 2.30 5.84 -2.39 -0.01 2.28 16 32 H 0.06 1.28 5.95 -2.39 -0.01 1.27 16 33 H 0.09 2.04 5.89 -2.39 -0.01 2.03 16 34 H 0.34 10.30 8.72 -89.69 -0.78 9.52 16 35 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 37 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 38 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 39 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 Total: -1.00 -67.79 327.29 3.06 -64.73 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: 0.29 Total: 11.47 kcal Atomic # 6 Polarization: -34.43 SS G_CDS: 3.38 Total: -31.05 kcal Atomic # 7 Polarization: -76.75 SS G_CDS: -3.28 Total: -80.03 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.64 Total: -10.52 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -67.79 3.06 -64.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873105300.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.273 kcal (2) G-P(sol) polarization free energy of solvation -67.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds