Wall clock time and date at job start Tue Mar 31 2020 00:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34230 * 116.99510 * 2 1 4 4 O 1.20820 * 120.00113 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99924 * 179.97438 * 3 2 1 6 6 C 1.52997 * 109.46885 * 179.97438 * 5 3 2 7 7 N 1.46509 * 109.46588 * 179.97438 * 6 5 3 8 8 C 1.36933 * 120.00178 * 275.41835 * 7 6 5 9 9 H 1.08008 * 119.99662 * 34.01787 * 8 7 6 10 10 C 1.38812 * 120.00323 * 214.01995 * 8 7 6 11 11 N 1.31621 * 119.99444 * 23.35544 * 10 8 7 12 12 Si 1.86799 * 120.00038 * 203.35397 * 10 8 7 13 13 H 1.48506 * 109.46784 * 60.00104 * 12 10 8 14 14 H 1.48497 * 109.46823 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47534 * 300.00071 * 12 10 8 16 16 C 1.46500 * 119.99661 * 95.42320 * 7 6 5 17 17 C 1.50706 * 109.46869 * 269.99580 * 16 7 6 18 18 C 1.38222 * 119.61655 * 95.00231 * 17 16 7 19 19 C 1.38632 * 119.15852 * 179.97438 * 18 17 16 20 20 C 1.38668 * 118.42272 * 359.97438 * 19 18 17 21 21 C 1.50699 * 120.42026 * 180.02562 * 20 19 18 22 22 C 1.38185 * 119.16472 * 0.02562 * 20 19 18 23 23 N 1.31858 * 119.61791 * 274.72660 * 17 16 7 24 24 H 1.08995 * 109.47290 * 300.00312 * 1 2 3 25 25 H 1.08998 * 109.46743 * 60.00695 * 1 2 3 26 26 H 1.09003 * 109.46524 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46795 * 59.99521 * 5 3 2 28 28 H 1.08997 * 109.46748 * 300.00039 * 5 3 2 29 29 H 1.08997 * 109.47392 * 60.00094 * 6 5 3 30 30 H 1.08997 * 109.47002 * 299.99447 * 6 5 3 31 31 H 0.97004 * 119.99266 * 179.97438 * 11 10 8 32 32 H 1.08998 * 109.46979 * 149.99914 * 16 7 6 33 33 H 1.08995 * 109.47602 * 29.99405 * 16 7 6 34 34 H 1.07998 * 120.42065 * 359.95837 * 18 17 16 35 35 H 1.08002 * 120.78501 * 180.02562 * 19 18 17 36 36 H 1.08995 * 109.47213 * 90.00562 * 21 20 19 37 37 H 1.08998 * 109.47442 * 210.00322 * 21 20 19 38 38 H 1.08997 * 109.47194 * 330.00396 * 21 20 19 39 39 H 1.07993 * 119.62179 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2750 0.0006 6 6 4.0000 2.7423 -0.0002 7 7 5.4631 2.8190 0.0010 8 6 6.1517 2.7439 1.1822 9 1 5.7816 2.1226 1.9844 10 6 7.3253 3.4663 1.3486 11 7 7.5471 4.5386 0.6182 12 14 8.5896 2.9167 2.6090 13 1 9.0558 1.5463 2.2773 14 1 9.7446 3.8499 2.5909 15 1 7.9739 2.9165 3.9603 16 6 6.1893 2.9761 -1.2616 17 6 6.5125 1.6173 -1.8276 18 6 5.6684 1.0483 -2.7627 19 6 5.9752 -0.2018 -3.2774 20 6 7.1249 -0.8355 -2.8308 21 6 7.5017 -2.1950 -3.3606 22 6 7.9208 -0.2047 -1.8937 23 7 7.6002 0.9873 -1.4291 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3632 -1.0277 -0.0005 27 1 3.9564 0.7807 -0.8891 28 1 3.9557 0.7811 0.8908 29 1 3.6099 3.2369 0.8893 30 1 3.6107 3.2357 -0.8907 31 1 8.3670 5.0436 0.7348 32 1 7.1141 3.5246 -1.0830 33 1 5.5711 3.5271 -1.9703 34 1 4.7811 1.5709 -3.0879 35 1 5.3344 -0.6706 -4.0095 36 1 8.1304 -2.0794 -4.2435 37 1 8.0487 -2.7448 -2.5947 38 1 6.5987 -2.7442 -3.6270 39 1 8.8176 -0.6916 -1.5404 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877709234.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:32 Heat of formation + Delta-G solvation = -35.560692 kcal Electronic energy + Delta-G solvation = -21877.466553 eV Core-core repulsion = 18592.880273 eV Total energy + Delta-G solvation = -3284.586280 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.14778 -39.61677 -36.52525 -35.78162 -33.14805 -32.12801 -31.47072 -30.04363 -28.02928 -27.24602 -25.03517 -24.15068 -22.91242 -21.58791 -20.57463 -19.94290 -17.35067 -16.90480 -16.28820 -16.23152 -15.95703 -15.42444 -14.69928 -14.53593 -14.17998 -13.78820 -13.60645 -13.21070 -13.15393 -12.76744 -12.52628 -12.35308 -12.28456 -12.09663 -12.01067 -11.54904 -11.16726 -10.94581 -10.74935 -10.66661 -10.60499 -10.23993 -10.10027 -10.05221 -9.94730 -9.21856 -8.63024 -8.50198 -8.14450 -6.72937 -5.81971 -3.35314 1.69234 1.86996 2.54161 3.00506 3.43528 3.48784 3.54990 4.36078 4.56165 5.00701 5.12573 5.14955 5.16510 5.20385 5.21359 5.34601 5.40380 5.51192 5.57390 5.65063 5.68864 5.69660 5.84590 5.90265 5.99096 6.19521 6.22575 6.33995 6.55831 6.56319 6.65049 6.73453 6.79984 6.95836 7.34737 7.62545 7.79989 8.05664 8.43821 8.86197 9.11300 9.76745 10.27778 11.20247 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.010470 B = 0.007664 C = 0.005057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2673.777158 B = 3652.416120 C = 5535.467675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.367 6.367 3 C 0.463 3.537 4 O -0.512 6.512 5 C -0.136 4.136 6 C 0.161 3.839 7 N -0.564 5.564 8 C -0.264 4.264 9 H 0.061 0.939 10 C 0.028 3.972 11 N -0.880 5.880 12 Si 0.900 3.100 13 H -0.279 1.279 14 H -0.291 1.291 15 H -0.284 1.284 16 C 0.175 3.825 17 C 0.137 3.863 18 C -0.181 4.181 19 C -0.082 4.082 20 C -0.171 4.171 21 C -0.101 4.101 22 C 0.097 3.903 23 N -0.455 5.455 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.101 0.899 29 H 0.060 0.940 30 H 0.048 0.952 31 H 0.257 0.743 32 H 0.120 0.880 33 H 0.044 0.956 34 H 0.123 0.877 35 H 0.120 0.880 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.269 -10.972 -7.061 14.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.284 6.284 3 C 0.307 3.693 4 O -0.400 6.400 5 C -0.177 4.177 6 C 0.033 3.967 7 N -0.282 5.282 8 C -0.392 4.392 9 H 0.079 0.921 10 C -0.174 4.174 11 N -0.522 5.522 12 Si 0.729 3.271 13 H -0.205 1.205 14 H -0.217 1.217 15 H -0.210 1.210 16 C 0.048 3.952 17 C -0.003 4.003 18 C -0.202 4.202 19 C -0.108 4.108 20 C -0.174 4.174 21 C -0.158 4.158 22 C -0.061 4.061 23 N -0.163 5.163 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.119 0.881 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.137 0.863 33 H 0.062 0.938 34 H 0.141 0.859 35 H 0.138 0.862 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -5.816 -10.062 -6.404 13.269 hybrid contribution -0.144 -1.003 -0.063 1.016 sum -5.961 -11.065 -6.467 14.134 Atomic orbital electron populations 1.23168 0.77474 1.03055 1.02267 1.86578 1.22698 1.34636 1.84486 1.24423 0.92709 0.80793 0.71416 1.90624 1.67440 1.36302 1.45605 1.22462 0.84724 1.05254 1.05247 1.20691 0.85369 0.89639 1.00996 1.43699 0.98845 1.83330 1.02335 1.18869 1.05944 1.21963 0.92472 0.92136 1.24964 1.00174 0.94199 0.98032 1.69946 1.25823 1.14232 1.42152 0.86423 0.81214 0.78662 0.80756 1.20491 1.21664 1.21035 1.20182 1.00955 0.88174 0.85859 1.22990 0.88187 0.99498 0.89667 1.22014 1.01474 0.96460 1.00209 1.21294 0.96049 0.94862 0.98602 1.20736 0.97410 0.98285 1.00937 1.20599 1.01393 0.93111 1.00719 1.22694 0.98318 0.91738 0.93336 1.67741 1.17614 1.07758 1.23191 0.92157 0.92234 0.88668 0.88680 0.88112 0.92137 0.93345 0.93296 0.86288 0.93755 0.85910 0.86160 0.91806 0.91784 0.92094 0.84102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 101.05 1.07 1.45 16 2 O -0.37 -5.53 10.57 -39.26 -0.41 -5.95 16 3 C 0.46 7.96 7.96 36.01 0.29 8.25 16 4 O -0.51 -9.84 15.73 -18.75 -0.29 -10.13 16 5 C -0.14 -2.46 6.11 -27.88 -0.17 -2.63 16 6 C 0.16 3.34 5.01 -4.04 -0.02 3.32 16 7 N -0.56 -13.51 2.44 -174.61 -0.43 -13.93 16 8 C -0.26 -7.02 9.48 -15.06 -0.14 -7.16 16 9 H 0.06 1.62 7.93 -52.48 -0.42 1.20 16 10 C 0.03 0.75 4.94 -17.43 -0.09 0.66 16 11 N -0.88 -24.83 11.34 55.49 0.63 -24.20 16 12 Si 0.90 21.92 29.61 -169.99 -5.03 16.88 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 14 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 15 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 16 C 0.18 4.02 5.64 -5.19 -0.03 3.99 16 17 C 0.14 2.83 6.29 -82.58 -0.52 2.31 16 18 C -0.18 -3.09 8.25 -39.44 -0.33 -3.41 16 19 C -0.08 -1.23 9.86 -39.28 -0.39 -1.61 16 20 C -0.17 -2.56 5.90 -104.48 -0.62 -3.18 16 21 C -0.10 -1.10 10.04 36.01 0.36 -0.74 16 22 C 0.10 1.72 10.86 -17.55 -0.19 1.53 16 23 N -0.45 -9.82 10.27 -9.47 -0.10 -9.91 16 24 H 0.06 0.67 8.13 -51.93 -0.42 0.24 16 25 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 26 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.10 1.68 6.51 -51.93 -0.34 1.34 16 28 H 0.10 1.87 8.14 -51.93 -0.42 1.45 16 29 H 0.06 1.34 8.04 -51.93 -0.42 0.92 16 30 H 0.05 0.97 7.79 -51.93 -0.40 0.56 16 31 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.12 3.16 5.33 -51.93 -0.28 2.88 16 33 H 0.04 0.93 7.76 -51.93 -0.40 0.53 16 34 H 0.12 1.88 8.06 -52.49 -0.42 1.46 16 35 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 38 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 39 H 0.14 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 334.90 15.07 5.05 5.05 Total: -1.00 -30.81 334.90 -6.98 -37.78 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -5.61 Total: 1.63 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: -0.77 Total: 2.78 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: 0.11 Total: -48.05 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: -0.71 Total: -16.08 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.81 -6.98 -37.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877709234.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.222 kcal (2) G-P(sol) polarization free energy of solvation -30.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds