Wall clock time and date at job start Tue Mar 31 2020 00:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34230 * 116.99510 * 2 1 4 4 O 1.20820 * 120.00113 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99924 * 179.97438 * 3 2 1 6 6 C 1.52997 * 109.46885 * 179.97438 * 5 3 2 7 7 N 1.46509 * 109.46588 * 179.97438 * 6 5 3 8 8 C 1.36933 * 120.00178 * 275.41835 * 7 6 5 9 9 H 1.08008 * 119.99662 * 34.01787 * 8 7 6 10 10 C 1.38812 * 120.00323 * 214.01995 * 8 7 6 11 11 N 1.31621 * 119.99444 * 23.35544 * 10 8 7 12 12 Si 1.86799 * 120.00038 * 203.35397 * 10 8 7 13 13 H 1.48506 * 109.46784 * 60.00104 * 12 10 8 14 14 H 1.48497 * 109.46823 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47534 * 300.00071 * 12 10 8 16 16 C 1.46500 * 119.99661 * 95.42320 * 7 6 5 17 17 C 1.50706 * 109.46869 * 269.99580 * 16 7 6 18 18 C 1.38222 * 119.61655 * 95.00231 * 17 16 7 19 19 C 1.38632 * 119.15852 * 179.97438 * 18 17 16 20 20 C 1.38668 * 118.42272 * 359.97438 * 19 18 17 21 21 C 1.50699 * 120.42026 * 180.02562 * 20 19 18 22 22 C 1.38185 * 119.16472 * 0.02562 * 20 19 18 23 23 N 1.31858 * 119.61791 * 274.72660 * 17 16 7 24 24 H 1.08995 * 109.47290 * 300.00312 * 1 2 3 25 25 H 1.08998 * 109.46743 * 60.00695 * 1 2 3 26 26 H 1.09003 * 109.46524 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46795 * 59.99521 * 5 3 2 28 28 H 1.08997 * 109.46748 * 300.00039 * 5 3 2 29 29 H 1.08997 * 109.47392 * 60.00094 * 6 5 3 30 30 H 1.08997 * 109.47002 * 299.99447 * 6 5 3 31 31 H 0.97004 * 119.99266 * 179.97438 * 11 10 8 32 32 H 1.08998 * 109.46979 * 149.99914 * 16 7 6 33 33 H 1.08995 * 109.47602 * 29.99405 * 16 7 6 34 34 H 1.07998 * 120.42065 * 359.95837 * 18 17 16 35 35 H 1.08002 * 120.78501 * 180.02562 * 19 18 17 36 36 H 1.08995 * 109.47213 * 90.00562 * 21 20 19 37 37 H 1.08998 * 109.47442 * 210.00322 * 21 20 19 38 38 H 1.08997 * 109.47194 * 330.00396 * 21 20 19 39 39 H 1.07993 * 119.62179 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2750 0.0006 6 6 4.0000 2.7423 -0.0002 7 7 5.4631 2.8190 0.0010 8 6 6.1517 2.7439 1.1822 9 1 5.7816 2.1226 1.9844 10 6 7.3253 3.4663 1.3486 11 7 7.5471 4.5386 0.6182 12 14 8.5896 2.9167 2.6090 13 1 9.0558 1.5463 2.2773 14 1 9.7446 3.8499 2.5909 15 1 7.9739 2.9165 3.9603 16 6 6.1893 2.9761 -1.2616 17 6 6.5125 1.6173 -1.8276 18 6 5.6684 1.0483 -2.7627 19 6 5.9752 -0.2018 -3.2774 20 6 7.1249 -0.8355 -2.8308 21 6 7.5017 -2.1950 -3.3606 22 6 7.9208 -0.2047 -1.8937 23 7 7.6002 0.9873 -1.4291 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3632 -1.0277 -0.0005 27 1 3.9564 0.7807 -0.8891 28 1 3.9557 0.7811 0.8908 29 1 3.6099 3.2369 0.8893 30 1 3.6107 3.2357 -0.8907 31 1 8.3670 5.0436 0.7348 32 1 7.1141 3.5246 -1.0830 33 1 5.5711 3.5271 -1.9703 34 1 4.7811 1.5709 -3.0879 35 1 5.3344 -0.6706 -4.0095 36 1 8.1304 -2.0794 -4.2435 37 1 8.0487 -2.7448 -2.5947 38 1 6.5987 -2.7442 -3.6270 39 1 8.8176 -0.6916 -1.5404 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877709234.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:32 Heat of formation + Delta-G solvation = -53.305901 kcal Electronic energy + Delta-G solvation = -21878.236043 eV Core-core repulsion = 18592.880273 eV Total energy + Delta-G solvation = -3285.355770 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.48193 -40.97664 -38.01483 -37.31893 -34.42944 -33.99288 -32.85237 -31.65257 -29.30879 -28.46791 -26.69710 -25.63363 -24.24657 -23.09019 -22.00054 -21.48740 -18.88453 -18.56644 -17.59899 -17.55721 -17.35363 -16.84976 -16.41739 -15.92274 -15.75227 -15.35641 -14.94498 -14.61360 -14.52394 -14.10339 -13.86756 -13.65199 -13.44076 -13.32770 -13.11640 -13.01014 -12.81757 -12.70873 -12.47495 -12.29919 -12.00177 -11.98821 -11.82708 -11.69122 -11.54268 -10.52894 -10.50570 -10.04042 -9.47830 -8.66598 -7.83931 -5.40889 0.36277 0.59484 1.17388 1.45290 1.51325 1.56752 1.78530 2.53982 3.00545 3.31244 3.69796 3.74156 4.00027 4.05458 4.08319 4.14674 4.24857 4.28750 4.33045 4.34769 4.40327 4.65150 4.69225 4.71809 4.81551 4.90586 4.93263 4.96569 5.09231 5.21524 5.28820 5.37880 5.40486 5.49130 5.67736 5.75015 6.04472 6.44495 6.74131 7.13981 7.46401 7.82279 8.30947 9.14493 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.010470 B = 0.007664 C = 0.005057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2673.777158 B = 3652.416120 C = 5535.467675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.367 6.367 3 C 0.473 3.527 4 O -0.536 6.536 5 C -0.121 4.121 6 C 0.164 3.836 7 N -0.578 5.578 8 C -0.264 4.264 9 H 0.054 0.946 10 C -0.017 4.017 11 N -0.909 5.909 12 Si 0.950 3.050 13 H -0.284 1.284 14 H -0.293 1.293 15 H -0.276 1.276 16 C 0.180 3.820 17 C 0.111 3.889 18 C -0.176 4.176 19 C -0.077 4.077 20 C -0.153 4.153 21 C -0.099 4.099 22 C 0.075 3.925 23 N -0.503 5.503 24 H 0.059 0.941 25 H 0.064 0.936 26 H 0.133 0.867 27 H 0.104 0.896 28 H 0.094 0.906 29 H 0.039 0.961 30 H 0.054 0.946 31 H 0.252 0.748 32 H 0.081 0.919 33 H 0.052 0.948 34 H 0.139 0.861 35 H 0.162 0.838 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.463 -14.057 -8.561 18.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.284 6.284 3 C 0.318 3.682 4 O -0.426 6.426 5 C -0.161 4.161 6 C 0.038 3.962 7 N -0.297 5.297 8 C -0.394 4.394 9 H 0.072 0.928 10 C -0.215 4.215 11 N -0.553 5.553 12 Si 0.778 3.222 13 H -0.211 1.211 14 H -0.219 1.219 15 H -0.202 1.202 16 C 0.053 3.947 17 C -0.029 4.029 18 C -0.197 4.197 19 C -0.103 4.103 20 C -0.156 4.156 21 C -0.156 4.156 22 C -0.083 4.083 23 N -0.212 5.212 24 H 0.078 0.922 25 H 0.082 0.918 26 H 0.151 0.849 27 H 0.122 0.878 28 H 0.112 0.888 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.157 0.843 35 H 0.179 0.821 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -7.032 -13.185 -7.910 16.908 hybrid contribution 0.144 -0.172 0.298 0.374 sum -6.888 -13.358 -7.612 16.847 Atomic orbital electron populations 1.23557 0.74901 1.05672 1.02526 1.86537 1.25089 1.32926 1.83813 1.24010 0.92174 0.81137 0.70919 1.90622 1.67832 1.37252 1.46872 1.22066 0.85871 1.02802 1.05359 1.20612 0.83868 0.91549 1.00197 1.43783 0.99897 1.84003 1.02052 1.19002 1.06120 1.20909 0.93355 0.92844 1.25519 1.01684 0.94470 0.99821 1.70063 1.25916 1.15384 1.43915 0.85635 0.79414 0.77648 0.79467 1.21082 1.21873 1.20196 1.19917 0.99166 0.89868 0.85720 1.22471 0.89697 0.98636 0.92076 1.22107 1.01119 0.97421 0.99029 1.21745 0.96283 0.93765 0.98515 1.21191 0.96195 0.99529 0.98655 1.20695 1.02833 0.90595 1.01452 1.23041 0.99635 0.91078 0.94532 1.67551 1.18744 1.09853 1.25052 0.92217 0.91762 0.84901 0.87777 0.88788 0.94291 0.92740 0.93908 0.90175 0.92976 0.84327 0.82065 0.90096 0.90874 0.89983 0.82738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.56 113.37 1.20 1.71 16 2 O -0.37 -10.18 10.57 -51.42 -0.54 -10.73 16 3 C 0.47 15.67 7.96 71.24 0.57 16.24 16 4 O -0.54 -20.19 15.73 21.98 0.35 -19.84 16 5 C -0.12 -4.29 6.11 29.85 0.18 -4.10 16 6 C 0.16 6.97 5.01 86.38 0.43 7.41 16 7 N -0.58 -28.51 2.44 -706.33 -1.73 -30.23 16 8 C -0.26 -14.53 9.48 84.03 0.80 -13.73 16 9 H 0.05 2.95 7.93 -2.91 -0.02 2.92 16 10 C -0.02 -0.94 4.94 84.86 0.42 -0.53 16 11 N -0.91 -53.59 11.34 21.65 0.25 -53.35 16 12 Si 0.95 46.39 29.61 68.60 2.03 48.42 16 13 H -0.28 -13.98 7.11 99.48 0.71 -13.28 16 14 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 15 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 16 C 0.18 8.54 5.64 85.64 0.48 9.03 16 17 C 0.11 4.60 6.29 42.55 0.27 4.86 16 18 C -0.18 -5.68 8.25 22.36 0.18 -5.50 16 19 C -0.08 -2.01 9.86 22.47 0.22 -1.79 16 20 C -0.15 -4.08 5.90 -19.77 -0.12 -4.19 16 21 C -0.10 -1.69 10.04 71.24 0.72 -0.97 16 22 C 0.07 2.55 10.86 84.67 0.92 3.47 16 23 N -0.50 -21.93 10.27 -183.88 -1.89 -23.82 16 24 H 0.06 1.19 8.13 -2.39 -0.02 1.17 16 25 H 0.06 1.21 8.13 -2.39 -0.02 1.19 16 26 H 0.13 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.10 3.52 6.51 -2.39 -0.02 3.50 16 28 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 29 H 0.04 1.79 8.04 -2.39 -0.02 1.77 16 30 H 0.05 2.21 7.79 -2.39 -0.02 2.19 16 31 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 32 H 0.08 4.49 5.33 -2.39 -0.01 4.48 16 33 H 0.05 2.27 7.76 -2.39 -0.02 2.26 16 34 H 0.14 3.93 8.06 -2.91 -0.02 3.91 16 35 H 0.16 2.90 8.06 -2.91 -0.02 2.88 16 36 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.07 1.16 8.09 -2.39 -0.02 1.14 16 38 H 0.08 1.12 8.10 -2.39 -0.02 1.10 16 39 H 0.16 4.58 8.06 -2.91 -0.02 4.56 16 Total: -1.00 -69.55 334.90 5.77 -63.78 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: 1.04 Total: 13.86 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: 6.27 Total: 11.90 kcal Atomic # 7 Polarization: -104.03 SS G_CDS: -3.37 Total: -107.40 kcal Atomic # 8 Polarization: -30.37 SS G_CDS: -0.20 Total: -30.57 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -69.55 5.77 -63.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877709234.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.472 kcal (2) G-P(sol) polarization free energy of solvation -69.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds