Wall clock time and date at job start Tue Mar 31 2020 00:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34230 * 117.00013 * 2 1 4 4 O 1.20828 * 120.00038 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00037 * 180.02562 * 3 2 1 6 6 C 1.53005 * 109.47013 * 180.02562 * 5 3 2 7 7 N 1.46501 * 109.47096 * 180.02562 * 6 5 3 8 8 C 1.36934 * 119.99510 * 272.55592 * 7 6 5 9 9 H 1.08001 * 120.00536 * 317.00818 * 8 7 6 10 10 C 1.38818 * 119.99700 * 137.01209 * 8 7 6 11 11 N 1.31623 * 120.00029 * 345.56793 * 10 8 7 12 12 Si 1.86797 * 119.99941 * 165.57536 * 10 8 7 13 13 H 1.48498 * 109.47238 * 59.99950 * 12 10 8 14 14 H 1.48506 * 109.47043 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47074 * 299.99805 * 12 10 8 16 16 C 1.46494 * 119.99974 * 92.55607 * 7 6 5 17 17 C 1.50703 * 109.47276 * 90.00284 * 16 7 6 18 18 C 1.38678 * 120.41589 * 260.00344 * 17 16 7 19 19 C 1.38620 * 118.41903 * 179.74995 * 18 17 16 20 20 C 1.38231 * 119.16387 * 0.24586 * 19 18 17 21 21 N 1.31856 * 120.75999 * 0.02562 * 20 19 18 22 22 C 1.31883 * 121.72821 * 359.97438 * 21 20 19 23 23 C 1.50696 * 119.61752 * 179.97438 * 22 21 20 24 24 H 1.08997 * 109.47515 * 59.99755 * 1 2 3 25 25 H 1.09000 * 109.47358 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46756 * 299.99344 * 1 2 3 27 27 H 1.08993 * 109.47185 * 60.00217 * 5 3 2 28 28 H 1.08995 * 109.47105 * 299.99740 * 5 3 2 29 29 H 1.09003 * 109.46989 * 59.99951 * 6 5 3 30 30 H 1.09004 * 109.46954 * 299.99901 * 6 5 3 31 31 H 0.97000 * 120.00076 * 180.02562 * 11 10 8 32 32 H 1.08996 * 109.47428 * 330.00113 * 16 7 6 33 33 H 1.08998 * 109.46980 * 209.99923 * 16 7 6 34 34 H 1.08003 * 120.78586 * 0.02562 * 18 17 16 35 35 H 1.08003 * 120.42410 * 180.26858 * 19 18 17 36 36 H 1.07999 * 119.62033 * 180.02562 * 20 19 18 37 37 H 1.08995 * 109.47651 * 90.00158 * 23 22 21 38 38 H 1.09006 * 109.47279 * 209.99720 * 23 22 21 39 39 H 1.08999 * 109.47461 * 329.99605 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 0.0002 7 7 5.4631 2.8188 -0.0010 8 6 6.1505 2.8009 1.1832 9 1 5.7977 3.3836 2.0213 10 6 7.3010 2.0339 1.3063 11 7 7.5783 1.1143 0.4064 12 14 8.4554 2.3067 2.7493 13 1 7.7254 2.0651 4.0197 14 1 9.6012 1.3672 2.6510 15 1 8.9569 3.7042 2.7246 16 6 6.1905 2.9147 -1.2690 17 6 6.3658 4.3650 -1.6392 18 6 5.5278 4.9577 -2.5717 19 6 5.7227 6.2956 -2.8775 20 6 6.7419 6.9882 -2.2511 21 7 7.5231 6.3905 -1.3731 22 6 7.3669 5.1194 -1.0579 23 6 8.2877 4.4838 -0.0484 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8901 27 1 3.9557 0.7810 -0.8908 28 1 3.9564 0.7806 0.8891 29 1 3.6107 3.2357 0.8907 30 1 3.6100 3.2368 -0.8894 31 1 8.3820 0.5781 0.4926 32 1 5.6267 2.4057 -2.0507 33 1 7.1689 2.4460 -1.1628 34 1 4.7392 4.3915 -3.0450 35 1 5.0861 6.7909 -3.5958 36 1 6.9000 8.0310 -2.4835 37 1 7.8656 4.5970 0.9502 38 1 8.4013 3.4241 -0.2768 39 1 9.2621 4.9706 -0.0883 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877709329.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:39 Heat of formation + Delta-G solvation = -34.609351 kcal Electronic energy + Delta-G solvation = -22027.058297 eV Core-core repulsion = 18742.513270 eV Total energy + Delta-G solvation = -3284.545027 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.06075 -39.62164 -36.51372 -35.85073 -32.59929 -32.23063 -31.81437 -29.74296 -27.50758 -27.19547 -25.53641 -24.41151 -22.12867 -21.67011 -20.60351 -19.69896 -17.33414 -16.83569 -16.22176 -16.09433 -16.02743 -15.60447 -14.92948 -14.26281 -14.08485 -13.80960 -13.53780 -13.15731 -12.88556 -12.59553 -12.40902 -12.17450 -12.09207 -11.75550 -11.65190 -11.49097 -11.19299 -10.93720 -10.60927 -10.58855 -10.51916 -10.30255 -10.06925 -9.98011 -9.91803 -9.06775 -8.82784 -8.56980 -8.05243 -6.72045 -5.97104 -3.61605 1.80412 1.94247 2.62534 3.09624 3.28433 3.34317 3.38129 4.31565 4.46485 4.99846 5.17321 5.19252 5.20696 5.25280 5.36404 5.52888 5.53374 5.63527 5.70197 5.82436 5.85135 5.99865 6.13384 6.34541 6.36511 6.48669 6.57075 6.63613 6.69010 6.72608 6.82843 6.94087 7.09163 7.11125 7.36482 7.59761 7.68554 8.13495 8.39131 8.68879 9.00716 9.57410 10.20424 11.02603 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013002 B = 0.006766 C = 0.004760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.945829 B = 4137.177679 C = 5880.848037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.366 6.366 3 C 0.462 3.538 4 O -0.519 6.519 5 C -0.128 4.128 6 C 0.164 3.836 7 N -0.569 5.569 8 C -0.265 4.265 9 H 0.060 0.940 10 C 0.027 3.973 11 N -0.885 5.885 12 Si 0.887 3.113 13 H -0.280 1.280 14 H -0.287 1.287 15 H -0.272 1.272 16 C 0.178 3.822 17 C -0.126 4.126 18 C -0.083 4.083 19 C -0.191 4.191 20 C 0.076 3.924 21 N -0.497 5.497 22 C 0.151 3.849 23 C -0.105 4.105 24 H 0.058 0.942 25 H 0.094 0.906 26 H 0.058 0.942 27 H 0.097 0.903 28 H 0.109 0.891 29 H 0.052 0.948 30 H 0.043 0.957 31 H 0.260 0.740 32 H 0.036 0.964 33 H 0.110 0.890 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.142 0.858 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.232 0.652 -4.501 7.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.283 6.283 3 C 0.305 3.695 4 O -0.408 6.408 5 C -0.168 4.168 6 C 0.037 3.963 7 N -0.287 5.287 8 C -0.394 4.394 9 H 0.078 0.922 10 C -0.174 4.174 11 N -0.526 5.526 12 Si 0.715 3.285 13 H -0.206 1.206 14 H -0.213 1.213 15 H -0.198 1.198 16 C 0.052 3.948 17 C -0.131 4.131 18 C -0.109 4.109 19 C -0.211 4.211 20 C -0.081 4.081 21 N -0.207 5.207 22 C 0.013 3.987 23 C -0.162 4.162 24 H 0.077 0.923 25 H 0.113 0.887 26 H 0.077 0.923 27 H 0.115 0.885 28 H 0.127 0.873 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.127 0.873 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.159 0.841 37 H 0.108 0.892 38 H 0.114 0.886 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.640 1.272 -4.093 7.084 hybrid contribution -0.493 -0.289 0.247 0.622 sum -6.133 0.983 -3.846 7.306 Atomic orbital electron populations 1.23149 0.77736 1.02993 1.02108 1.86599 1.22504 1.34757 1.84411 1.24719 0.93007 0.80676 0.71062 1.90606 1.67623 1.36411 1.46136 1.22392 0.83802 1.04706 1.05910 1.20769 0.85435 0.90156 0.99970 1.43693 0.99364 1.83383 1.02308 1.18973 1.07354 1.22141 0.90963 0.92234 1.25315 1.00462 0.94594 0.97071 1.69891 1.26516 1.20445 1.35712 0.86707 0.80725 0.78320 0.82783 1.20596 1.21285 1.19776 1.20001 1.01060 0.86910 0.86834 1.22028 0.94463 1.01824 0.94775 1.21459 0.98158 0.94522 0.96806 1.21917 1.00587 0.95716 1.02841 1.22445 0.92466 0.99443 0.93741 1.67481 1.27616 1.11294 1.14303 1.21223 0.94260 0.88565 0.94608 1.21088 0.95837 1.01371 0.97884 0.92346 0.88713 0.92296 0.88503 0.87319 0.92978 0.93832 0.92997 0.94539 0.87251 0.86004 0.86149 0.84097 0.89247 0.88560 0.93398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 101.05 1.07 1.47 16 2 O -0.37 -5.71 10.57 -39.26 -0.41 -6.12 16 3 C 0.46 8.08 7.96 36.01 0.29 8.37 16 4 O -0.52 -10.09 15.73 -18.75 -0.29 -10.38 16 5 C -0.13 -2.34 6.13 -27.88 -0.17 -2.51 16 6 C 0.16 3.31 4.96 -4.04 -0.02 3.29 16 7 N -0.57 -12.69 2.37 -174.61 -0.41 -13.11 16 8 C -0.26 -6.41 7.43 -15.06 -0.11 -6.52 16 9 H 0.06 1.50 7.87 -52.49 -0.41 1.09 16 10 C 0.03 0.65 3.00 -17.43 -0.05 0.59 16 11 N -0.88 -22.05 11.22 55.49 0.62 -21.43 16 12 Si 0.89 19.59 27.87 -169.99 -4.74 14.85 16 13 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 14 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 15 H -0.27 -5.92 6.85 56.52 0.39 -5.53 16 16 C 0.18 3.79 5.00 -5.20 -0.03 3.76 16 17 C -0.13 -2.55 5.48 -104.48 -0.57 -3.12 16 18 C -0.08 -1.46 9.82 -39.28 -0.39 -1.84 16 19 C -0.19 -3.03 10.11 -39.44 -0.40 -3.43 16 20 C 0.08 1.29 11.18 -17.54 -0.20 1.10 16 21 N -0.50 -9.99 10.27 -9.47 -0.10 -10.09 16 22 C 0.15 3.18 6.78 -82.59 -0.56 2.62 16 23 C -0.10 -2.22 7.47 36.00 0.27 -1.95 16 24 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 25 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 27 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 28 H 0.11 2.12 8.14 -51.93 -0.42 1.70 16 29 H 0.05 1.11 8.02 -51.93 -0.42 0.69 16 30 H 0.04 0.85 8.01 -51.93 -0.42 0.44 16 31 H 0.26 6.38 8.31 -40.82 -0.34 6.04 16 32 H 0.04 0.73 7.96 -51.93 -0.41 0.31 16 33 H 0.11 2.57 4.12 -51.93 -0.21 2.35 16 34 H 0.12 1.90 8.06 -52.48 -0.42 1.47 16 35 H 0.12 1.51 8.06 -52.48 -0.42 1.09 16 36 H 0.14 1.91 8.06 -52.49 -0.42 1.49 16 37 H 0.09 2.01 5.57 -51.93 -0.29 1.72 16 38 H 0.10 2.14 4.38 -51.93 -0.23 1.92 16 39 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 322.22 15.07 4.86 4.86 Total: -1.00 -27.33 322.22 -6.70 -34.03 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -5.34 Total: 5.56 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -0.87 Total: 1.84 kcal Atomic # 7 Polarization: -44.73 SS G_CDS: 0.11 Total: -44.62 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -0.71 Total: -16.51 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -4.74 Total: 14.85 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -27.33 -6.70 -34.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877709329.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.579 kcal (2) G-P(sol) polarization free energy of solvation -27.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds