Wall clock time and date at job start Tue Mar 31 2020 00:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34230 * 117.00013 * 2 1 4 4 O 1.20828 * 120.00038 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00037 * 180.02562 * 3 2 1 6 6 C 1.53005 * 109.47013 * 180.02562 * 5 3 2 7 7 N 1.46501 * 109.47096 * 180.02562 * 6 5 3 8 8 C 1.36934 * 119.99510 * 272.55592 * 7 6 5 9 9 H 1.08001 * 120.00536 * 317.00818 * 8 7 6 10 10 C 1.38818 * 119.99700 * 137.01209 * 8 7 6 11 11 N 1.31623 * 120.00029 * 345.56793 * 10 8 7 12 12 Si 1.86797 * 119.99941 * 165.57536 * 10 8 7 13 13 H 1.48498 * 109.47238 * 59.99950 * 12 10 8 14 14 H 1.48506 * 109.47043 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47074 * 299.99805 * 12 10 8 16 16 C 1.46494 * 119.99974 * 92.55607 * 7 6 5 17 17 C 1.50703 * 109.47276 * 90.00284 * 16 7 6 18 18 C 1.38678 * 120.41589 * 260.00344 * 17 16 7 19 19 C 1.38620 * 118.41903 * 179.74995 * 18 17 16 20 20 C 1.38231 * 119.16387 * 0.24586 * 19 18 17 21 21 N 1.31856 * 120.75999 * 0.02562 * 20 19 18 22 22 C 1.31883 * 121.72821 * 359.97438 * 21 20 19 23 23 C 1.50696 * 119.61752 * 179.97438 * 22 21 20 24 24 H 1.08997 * 109.47515 * 59.99755 * 1 2 3 25 25 H 1.09000 * 109.47358 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46756 * 299.99344 * 1 2 3 27 27 H 1.08993 * 109.47185 * 60.00217 * 5 3 2 28 28 H 1.08995 * 109.47105 * 299.99740 * 5 3 2 29 29 H 1.09003 * 109.46989 * 59.99951 * 6 5 3 30 30 H 1.09004 * 109.46954 * 299.99901 * 6 5 3 31 31 H 0.97000 * 120.00076 * 180.02562 * 11 10 8 32 32 H 1.08996 * 109.47428 * 330.00113 * 16 7 6 33 33 H 1.08998 * 109.46980 * 209.99923 * 16 7 6 34 34 H 1.08003 * 120.78586 * 0.02562 * 18 17 16 35 35 H 1.08003 * 120.42410 * 180.26858 * 19 18 17 36 36 H 1.07999 * 119.62033 * 180.02562 * 20 19 18 37 37 H 1.08995 * 109.47651 * 90.00158 * 23 22 21 38 38 H 1.09006 * 109.47279 * 209.99720 * 23 22 21 39 39 H 1.08999 * 109.47461 * 329.99605 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 0.0002 7 7 5.4631 2.8188 -0.0010 8 6 6.1505 2.8009 1.1832 9 1 5.7977 3.3836 2.0213 10 6 7.3010 2.0339 1.3063 11 7 7.5783 1.1143 0.4064 12 14 8.4554 2.3067 2.7493 13 1 7.7254 2.0651 4.0197 14 1 9.6012 1.3672 2.6510 15 1 8.9569 3.7042 2.7246 16 6 6.1905 2.9147 -1.2690 17 6 6.3658 4.3650 -1.6392 18 6 5.5278 4.9577 -2.5717 19 6 5.7227 6.2956 -2.8775 20 6 6.7419 6.9882 -2.2511 21 7 7.5231 6.3905 -1.3731 22 6 7.3669 5.1194 -1.0579 23 6 8.2877 4.4838 -0.0484 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8901 27 1 3.9557 0.7810 -0.8908 28 1 3.9564 0.7806 0.8891 29 1 3.6107 3.2357 0.8907 30 1 3.6100 3.2368 -0.8894 31 1 8.3820 0.5781 0.4926 32 1 5.6267 2.4057 -2.0507 33 1 7.1689 2.4460 -1.1628 34 1 4.7392 4.3915 -3.0450 35 1 5.0861 6.7909 -3.5958 36 1 6.9000 8.0310 -2.4835 37 1 7.8656 4.5970 0.9502 38 1 8.4013 3.4241 -0.2768 39 1 9.2621 4.9706 -0.0883 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877709329.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:38 Heat of formation + Delta-G solvation = -49.263985 kcal Electronic energy + Delta-G solvation = -22027.693769 eV Core-core repulsion = 18742.513270 eV Total energy + Delta-G solvation = -3285.180499 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.42498 -41.05978 -38.02785 -37.33051 -34.20760 -33.73227 -33.43398 -31.31268 -28.89328 -28.54114 -27.12891 -26.01315 -23.61741 -23.18498 -22.04474 -21.23792 -18.87387 -18.42473 -17.54903 -17.48621 -17.38632 -17.03672 -16.66809 -15.83649 -15.59682 -15.35471 -14.98642 -14.59680 -14.34871 -13.96834 -13.89390 -13.68840 -13.49116 -13.26990 -13.24475 -12.89892 -12.84812 -12.51151 -12.36592 -12.29731 -12.02265 -11.79732 -11.64651 -11.60622 -11.47393 -10.50709 -10.48971 -10.19789 -9.51310 -8.51940 -7.81990 -5.49510 0.39528 0.53710 1.22388 1.47993 1.53022 1.56227 1.86000 2.51423 3.00684 3.30173 3.64415 3.75387 4.07438 4.10165 4.13384 4.25855 4.32765 4.33489 4.35397 4.36051 4.47542 4.70922 4.72504 4.78668 4.84569 4.96146 4.98911 5.07684 5.10332 5.24822 5.37035 5.43870 5.49046 5.56469 5.73653 5.77998 6.06861 6.52894 6.78843 7.18831 7.25520 7.78487 8.37871 9.14256 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013002 B = 0.006766 C = 0.004760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.945829 B = 4137.177679 C = 5880.848037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.370 6.370 3 C 0.472 3.528 4 O -0.540 6.540 5 C -0.116 4.116 6 C 0.168 3.832 7 N -0.579 5.579 8 C -0.268 4.268 9 H 0.043 0.957 10 C 0.007 3.993 11 N -0.901 5.901 12 Si 0.922 3.078 13 H -0.283 1.283 14 H -0.289 1.289 15 H -0.270 1.270 16 C 0.185 3.815 17 C -0.145 4.145 18 C -0.084 4.084 19 C -0.176 4.176 20 C 0.073 3.927 21 N -0.520 5.520 22 C 0.124 3.876 23 C -0.093 4.093 24 H 0.063 0.937 25 H 0.131 0.869 26 H 0.059 0.941 27 H 0.102 0.898 28 H 0.095 0.905 29 H 0.036 0.964 30 H 0.051 0.949 31 H 0.256 0.744 32 H 0.046 0.954 33 H 0.086 0.914 34 H 0.143 0.857 35 H 0.164 0.836 36 H 0.179 0.821 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.654 1.395 -5.929 9.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.286 6.286 3 C 0.316 3.684 4 O -0.430 6.430 5 C -0.157 4.157 6 C 0.042 3.958 7 N -0.298 5.298 8 C -0.398 4.398 9 H 0.061 0.939 10 C -0.193 4.193 11 N -0.543 5.543 12 Si 0.750 3.250 13 H -0.209 1.209 14 H -0.215 1.215 15 H -0.195 1.195 16 C 0.059 3.941 17 C -0.150 4.150 18 C -0.111 4.111 19 C -0.195 4.195 20 C -0.084 4.084 21 N -0.230 5.230 22 C -0.013 4.013 23 C -0.151 4.151 24 H 0.082 0.918 25 H 0.149 0.851 26 H 0.078 0.922 27 H 0.120 0.880 28 H 0.113 0.887 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.103 0.897 34 H 0.161 0.839 35 H 0.182 0.818 36 H 0.195 0.805 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.073 2.000 -5.520 9.193 hybrid contribution -0.166 -0.452 0.610 0.778 sum -7.239 1.548 -4.910 8.883 Atomic orbital electron populations 1.23531 0.75119 1.05560 1.02447 1.86558 1.24982 1.33296 1.83792 1.24288 0.92486 0.80979 0.70619 1.90598 1.67956 1.37194 1.47266 1.22071 0.84963 1.03144 1.05484 1.20662 0.84361 0.91278 0.99496 1.43768 1.00064 1.83880 1.02118 1.18896 1.07837 1.21702 0.91365 0.93949 1.25569 1.01012 0.94479 0.98244 1.69965 1.26593 1.21084 1.36631 0.86144 0.79564 0.78184 0.81069 1.20934 1.21457 1.19507 1.19826 0.99785 0.87974 0.86520 1.21909 0.95571 1.01074 0.96398 1.21767 0.97860 0.95644 0.95834 1.22356 1.00033 0.94805 1.02337 1.23151 0.91828 1.01043 0.92407 1.67458 1.28980 1.10891 1.15667 1.21139 0.95104 0.89451 0.95591 1.20865 0.96344 1.00654 0.97200 0.91814 0.85108 0.92209 0.87983 0.88723 0.94593 0.93029 0.93385 0.93587 0.89650 0.83877 0.81828 0.80450 0.91277 0.90065 0.92808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.56 113.37 1.20 1.75 16 2 O -0.37 -10.93 10.57 -51.41 -0.54 -11.47 16 3 C 0.47 16.09 7.96 71.24 0.57 16.66 16 4 O -0.54 -20.44 15.73 21.96 0.35 -20.10 16 5 C -0.12 -4.25 6.13 29.85 0.18 -4.06 16 6 C 0.17 6.84 4.96 86.38 0.43 7.27 16 7 N -0.58 -26.22 2.37 -706.33 -1.68 -27.90 16 8 C -0.27 -13.33 7.43 84.04 0.62 -12.71 16 9 H 0.04 2.23 7.87 -2.91 -0.02 2.21 16 10 C 0.01 0.33 3.00 84.86 0.25 0.58 16 11 N -0.90 -45.93 11.22 21.65 0.24 -45.69 16 12 Si 0.92 40.99 27.87 68.60 1.91 42.90 16 13 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 14 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 15 H -0.27 -11.77 6.85 99.48 0.68 -11.09 16 16 C 0.18 7.92 5.00 85.63 0.43 8.35 16 17 C -0.15 -5.77 5.48 -19.77 -0.11 -5.88 16 18 C -0.08 -2.75 9.82 22.47 0.22 -2.53 16 19 C -0.18 -4.88 10.11 22.36 0.23 -4.66 16 20 C 0.07 2.25 11.18 84.69 0.95 3.19 16 21 N -0.52 -20.26 10.27 -183.89 -1.89 -22.15 16 22 C 0.12 5.21 6.78 42.54 0.29 5.50 16 23 C -0.09 -4.07 7.47 71.23 0.53 -3.53 16 24 H 0.06 1.28 8.13 -2.39 -0.02 1.26 16 25 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.06 1.25 8.13 -2.39 -0.02 1.23 16 27 H 0.10 3.62 8.14 -2.39 -0.02 3.60 16 28 H 0.09 3.75 8.14 -2.39 -0.02 3.73 16 29 H 0.04 1.55 8.02 -2.39 -0.02 1.53 16 30 H 0.05 1.98 8.01 -2.38 -0.02 1.97 16 31 H 0.26 12.87 8.31 -92.71 -0.77 12.10 16 32 H 0.05 1.82 7.96 -2.39 -0.02 1.80 16 33 H 0.09 4.12 4.12 -2.39 -0.01 4.11 16 34 H 0.14 3.99 8.06 -2.91 -0.02 3.96 16 35 H 0.16 3.15 8.06 -2.91 -0.02 3.12 16 36 H 0.18 4.03 8.06 -2.91 -0.02 4.00 16 37 H 0.07 3.22 5.57 -2.39 -0.01 3.21 16 38 H 0.08 3.75 4.38 -2.38 -0.01 3.74 16 39 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -59.37 322.22 5.20 -54.17 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: 1.02 Total: 20.31 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: 5.79 Total: 9.92 kcal Atomic # 7 Polarization: -92.41 SS G_CDS: -3.32 Total: -95.74 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -0.20 Total: -31.57 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 1.91 Total: 42.90 kcal Total: -59.37 5.20 -54.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877709329.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.908 kcal (2) G-P(sol) polarization free energy of solvation -59.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds