Wall clock time and date at job start Tue Mar 31 2020 00:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34226 * 117.00046 * 2 1 4 4 O 1.20828 * 120.00347 * 359.97438 * 3 2 1 5 5 C 1.50707 * 120.00146 * 179.97438 * 3 2 1 6 6 C 1.52998 * 109.47314 * 179.97438 * 5 3 2 7 7 N 1.46497 * 109.47074 * 180.02562 * 6 5 3 8 8 C 1.36938 * 119.99948 * 270.00481 * 7 6 5 9 9 H 1.08004 * 120.00270 * 323.82483 * 8 7 6 10 10 C 1.38816 * 120.00188 * 143.83365 * 8 7 6 11 11 N 1.31624 * 119.99343 * 338.42142 * 10 8 7 12 12 Si 1.86791 * 120.00394 * 158.42463 * 10 8 7 13 13 H 1.48501 * 109.47336 * 59.99497 * 12 10 8 14 14 H 1.48501 * 109.47262 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.47178 * 299.99709 * 12 10 8 16 16 C 1.46500 * 119.99983 * 90.00412 * 7 6 5 17 17 C 1.50699 * 109.47024 * 83.99839 * 16 7 6 18 18 C 1.38683 * 120.41816 * 84.72029 * 17 16 7 19 19 C 1.38623 * 118.42108 * 179.74828 * 18 17 16 20 20 C 1.38234 * 119.15821 * 0.25436 * 19 18 17 21 21 C 1.50703 * 119.61152 * 179.97438 * 20 19 18 22 22 N 1.31850 * 120.76639 * 0.02562 * 20 19 18 23 23 C 1.31884 * 121.72715 * 359.97438 * 22 20 19 24 24 H 1.08997 * 109.47046 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46953 * 300.00582 * 1 2 3 26 26 H 1.09001 * 109.46502 * 60.00055 * 1 2 3 27 27 H 1.09007 * 109.46738 * 60.00053 * 5 3 2 28 28 H 1.08999 * 109.47408 * 300.00348 * 5 3 2 29 29 H 1.09007 * 109.46855 * 60.00516 * 6 5 3 30 30 H 1.08999 * 109.47487 * 300.00691 * 6 5 3 31 31 H 0.97003 * 119.99454 * 179.97438 * 11 10 8 32 32 H 1.08999 * 109.46871 * 324.00152 * 16 7 6 33 33 H 1.08999 * 109.47129 * 203.99571 * 16 7 6 34 34 H 1.07996 * 120.78549 * 0.02562 * 18 17 16 35 35 H 1.07999 * 120.42287 * 180.22918 * 19 18 17 36 36 H 1.09000 * 109.46964 * 90.00103 * 21 20 19 37 37 H 1.09007 * 109.46711 * 209.99368 * 21 20 19 38 38 H 1.08997 * 109.47205 * 329.99489 * 21 20 19 39 39 H 1.07990 * 119.62032 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2749 0.0006 6 6 4.0002 2.7420 -0.0002 7 7 5.4632 2.8187 -0.0002 8 6 6.1469 2.8550 1.1857 9 1 5.7348 3.3866 2.0306 10 6 7.3700 2.2087 1.3018 11 7 7.6815 1.2358 0.4719 12 14 8.5735 2.7197 2.6358 13 1 7.9431 2.5367 3.9679 14 1 9.7957 1.8808 2.5477 15 1 8.9383 4.1475 2.4529 16 6 6.1947 2.8564 -1.2690 17 6 6.2431 4.2737 -1.7789 18 6 7.2264 5.1459 -1.3365 19 6 7.2352 6.4387 -1.8368 20 6 6.2674 6.8144 -2.7494 21 6 6.2671 8.2174 -3.2994 22 7 5.3439 5.9597 -3.1435 23 6 5.3049 4.7223 -2.6888 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 3.9564 0.7805 -0.8892 28 1 3.9558 0.7809 0.8908 29 1 3.6102 3.2367 0.8894 30 1 3.6108 3.2357 -0.8906 31 1 8.5363 0.7844 0.5528 32 1 5.6886 2.2247 -1.9990 33 1 7.2099 2.4912 -1.1141 34 1 7.9702 4.8242 -0.6227 35 1 7.9885 7.1436 -1.5172 36 1 6.8763 8.2538 -4.2025 37 1 5.2456 8.5138 -3.5382 38 1 6.6789 8.8994 -2.5555 39 1 4.5335 4.0506 -3.0351 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877710396.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:42 Heat of formation + Delta-G solvation = -41.229235 kcal Electronic energy + Delta-G solvation = -21508.810487 eV Core-core repulsion = 18223.978401 eV Total energy + Delta-G solvation = -3284.832086 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.05207 -39.63108 -36.52646 -35.84692 -32.78666 -32.16643 -31.67594 -30.00602 -28.13795 -27.30106 -24.95118 -24.29263 -22.79695 -21.62779 -20.63457 -19.72407 -17.34009 -16.87429 -16.21505 -16.07580 -16.00476 -15.44688 -14.89298 -14.43611 -14.21330 -13.89412 -13.71901 -13.28631 -12.93398 -12.72077 -12.50583 -12.22446 -12.09262 -11.97015 -11.93034 -11.55797 -11.33323 -11.09546 -10.85218 -10.58314 -10.56718 -10.30290 -10.28030 -10.06902 -9.96490 -9.12413 -8.88729 -8.64664 -8.15795 -6.83699 -6.00450 -3.53487 1.70220 1.94174 2.63347 3.09847 3.27099 3.33770 3.36341 4.28962 4.40405 4.79062 5.14919 5.18787 5.21661 5.22289 5.26874 5.48627 5.53731 5.62729 5.67679 5.76236 5.80584 5.82493 5.92096 5.93444 6.06876 6.15029 6.33386 6.45187 6.55512 6.63724 6.71724 6.77790 6.91520 7.14121 7.34013 7.44666 7.66972 8.14152 8.32444 8.54635 8.97978 9.59218 10.17119 11.01786 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.010854 B = 0.006519 C = 0.004354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.178778 B = 4294.354700 C = 6429.046451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.366 6.366 3 C 0.462 3.538 4 O -0.518 6.518 5 C -0.130 4.130 6 C 0.161 3.839 7 N -0.570 5.570 8 C -0.264 4.264 9 H 0.064 0.936 10 C 0.016 3.984 11 N -0.882 5.882 12 Si 0.896 3.104 13 H -0.279 1.279 14 H -0.289 1.289 15 H -0.281 1.281 16 C 0.180 3.820 17 C -0.127 4.127 18 C -0.055 4.055 19 C -0.177 4.177 20 C 0.096 3.904 21 C -0.095 4.095 22 N -0.493 5.493 23 C 0.093 3.907 24 H 0.094 0.906 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.097 0.903 28 H 0.108 0.892 29 H 0.054 0.946 30 H 0.046 0.954 31 H 0.259 0.741 32 H 0.038 0.962 33 H 0.108 0.892 34 H 0.131 0.869 35 H 0.122 0.878 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.728 2.539 -4.243 6.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.283 6.283 3 C 0.305 3.695 4 O -0.406 6.406 5 C -0.170 4.170 6 C 0.034 3.966 7 N -0.288 5.288 8 C -0.393 4.393 9 H 0.081 0.919 10 C -0.185 4.185 11 N -0.523 5.523 12 Si 0.725 3.275 13 H -0.205 1.205 14 H -0.214 1.214 15 H -0.207 1.207 16 C 0.053 3.947 17 C -0.132 4.132 18 C -0.081 4.081 19 C -0.197 4.197 20 C -0.042 4.042 21 C -0.153 4.153 22 N -0.202 5.202 23 C -0.065 4.065 24 H 0.113 0.887 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.115 0.885 28 H 0.126 0.874 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.125 0.875 34 H 0.149 0.851 35 H 0.140 0.860 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -5.424 2.972 -4.828 7.846 hybrid contribution 1.053 -0.154 1.406 1.763 sum -4.371 2.818 -3.422 6.226 Atomic orbital electron populations 1.23156 0.77692 1.02998 1.02145 1.86595 1.22539 1.34723 1.84419 1.24667 0.92939 0.80713 0.71143 1.90614 1.67589 1.36384 1.46021 1.22408 0.84018 1.04713 1.05868 1.20778 0.85275 0.90261 1.00256 1.43806 0.99513 1.83400 1.02080 1.19072 1.02392 1.27105 0.90774 0.91863 1.25158 1.00430 0.94967 0.97952 1.69984 1.22897 1.20306 1.39109 0.86480 0.80675 0.78380 0.81991 1.20522 1.21447 1.20699 1.19965 1.01555 0.86947 0.86195 1.22204 0.94281 1.01558 0.95181 1.21512 0.97699 0.92388 0.96548 1.21872 1.00463 0.97446 0.99875 1.21021 0.91998 0.95873 0.95342 1.20587 1.02912 0.91164 1.00620 1.67372 1.23522 1.03611 1.25716 1.22553 0.97371 0.91784 0.94767 0.88705 0.92285 0.92305 0.88483 0.87379 0.92777 0.93598 0.93122 0.94394 0.87455 0.85082 0.85952 0.91287 0.91136 0.91410 0.83809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 101.05 1.07 1.47 16 2 O -0.37 -5.75 10.57 -39.25 -0.41 -6.16 16 3 C 0.46 8.16 7.96 36.01 0.29 8.44 16 4 O -0.52 -10.18 15.73 -18.75 -0.29 -10.48 16 5 C -0.13 -2.39 6.14 -27.88 -0.17 -2.56 16 6 C 0.16 3.31 4.97 -4.04 -0.02 3.29 16 7 N -0.57 -12.94 2.42 -174.61 -0.42 -13.37 16 8 C -0.26 -6.60 9.47 -15.06 -0.14 -6.74 16 9 H 0.06 1.62 7.92 -52.48 -0.42 1.20 16 10 C 0.02 0.40 4.90 -17.43 -0.09 0.32 16 11 N -0.88 -22.86 11.47 55.49 0.64 -22.23 16 12 Si 0.90 20.04 29.60 -169.99 -5.03 15.00 16 13 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 14 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 15 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 16 C 0.18 3.85 5.38 -5.19 -0.03 3.83 16 17 C -0.13 -2.53 5.47 -104.48 -0.57 -3.10 16 18 C -0.05 -1.05 9.88 -39.28 -0.39 -1.44 16 19 C -0.18 -2.97 9.74 -39.44 -0.38 -3.35 16 20 C 0.10 1.61 6.78 -82.58 -0.56 1.05 16 21 C -0.10 -1.20 10.17 36.01 0.37 -0.83 16 22 N -0.49 -9.19 10.27 -9.47 -0.10 -9.28 16 23 C 0.09 1.74 10.77 -17.55 -0.19 1.55 16 24 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 26 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 27 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 28 H 0.11 2.12 8.14 -51.93 -0.42 1.69 16 29 H 0.05 1.16 8.00 -51.93 -0.42 0.75 16 30 H 0.05 0.92 7.96 -51.93 -0.41 0.50 16 31 H 0.26 6.55 8.31 -40.82 -0.34 6.22 16 32 H 0.04 0.76 8.04 -51.93 -0.42 0.35 16 33 H 0.11 2.57 5.49 -51.93 -0.28 2.29 16 34 H 0.13 2.59 8.06 -52.49 -0.42 2.16 16 35 H 0.12 1.71 8.06 -52.49 -0.42 1.28 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 39 H 0.14 2.47 8.06 -52.49 -0.42 2.04 16 LS Contribution 338.51 15.07 5.10 5.10 Total: -1.00 -28.47 338.51 -7.07 -35.54 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -5.73 Total: 3.94 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -0.82 Total: 1.92 kcal Atomic # 7 Polarization: -45.00 SS G_CDS: 0.12 Total: -44.88 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -0.71 Total: -16.64 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.03 Total: 15.00 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.47 -7.07 -35.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877710396.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.687 kcal (2) G-P(sol) polarization free energy of solvation -28.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds