Wall clock time and date at job start Tue Mar 31 2020 00:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34226 * 117.00046 * 2 1 4 4 O 1.20828 * 120.00347 * 359.97438 * 3 2 1 5 5 C 1.50707 * 120.00146 * 179.97438 * 3 2 1 6 6 C 1.52998 * 109.47314 * 179.97438 * 5 3 2 7 7 N 1.46497 * 109.47074 * 180.02562 * 6 5 3 8 8 C 1.36938 * 119.99948 * 270.00481 * 7 6 5 9 9 H 1.08004 * 120.00270 * 323.82483 * 8 7 6 10 10 C 1.38816 * 120.00188 * 143.83365 * 8 7 6 11 11 N 1.31624 * 119.99343 * 338.42142 * 10 8 7 12 12 Si 1.86791 * 120.00394 * 158.42463 * 10 8 7 13 13 H 1.48501 * 109.47336 * 59.99497 * 12 10 8 14 14 H 1.48501 * 109.47262 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.47178 * 299.99709 * 12 10 8 16 16 C 1.46500 * 119.99983 * 90.00412 * 7 6 5 17 17 C 1.50699 * 109.47024 * 83.99839 * 16 7 6 18 18 C 1.38683 * 120.41816 * 84.72029 * 17 16 7 19 19 C 1.38623 * 118.42108 * 179.74828 * 18 17 16 20 20 C 1.38234 * 119.15821 * 0.25436 * 19 18 17 21 21 C 1.50703 * 119.61152 * 179.97438 * 20 19 18 22 22 N 1.31850 * 120.76639 * 0.02562 * 20 19 18 23 23 C 1.31884 * 121.72715 * 359.97438 * 22 20 19 24 24 H 1.08997 * 109.47046 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46953 * 300.00582 * 1 2 3 26 26 H 1.09001 * 109.46502 * 60.00055 * 1 2 3 27 27 H 1.09007 * 109.46738 * 60.00053 * 5 3 2 28 28 H 1.08999 * 109.47408 * 300.00348 * 5 3 2 29 29 H 1.09007 * 109.46855 * 60.00516 * 6 5 3 30 30 H 1.08999 * 109.47487 * 300.00691 * 6 5 3 31 31 H 0.97003 * 119.99454 * 179.97438 * 11 10 8 32 32 H 1.08999 * 109.46871 * 324.00152 * 16 7 6 33 33 H 1.08999 * 109.47129 * 203.99571 * 16 7 6 34 34 H 1.07996 * 120.78549 * 0.02562 * 18 17 16 35 35 H 1.07999 * 120.42287 * 180.22918 * 19 18 17 36 36 H 1.09000 * 109.46964 * 90.00103 * 21 20 19 37 37 H 1.09007 * 109.46711 * 209.99368 * 21 20 19 38 38 H 1.08997 * 109.47205 * 329.99489 * 21 20 19 39 39 H 1.07990 * 119.62032 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2749 0.0006 6 6 4.0002 2.7420 -0.0002 7 7 5.4632 2.8187 -0.0002 8 6 6.1469 2.8550 1.1857 9 1 5.7348 3.3866 2.0306 10 6 7.3700 2.2087 1.3018 11 7 7.6815 1.2358 0.4719 12 14 8.5735 2.7197 2.6358 13 1 7.9431 2.5367 3.9679 14 1 9.7957 1.8808 2.5477 15 1 8.9383 4.1475 2.4529 16 6 6.1947 2.8564 -1.2690 17 6 6.2431 4.2737 -1.7789 18 6 7.2264 5.1459 -1.3365 19 6 7.2352 6.4387 -1.8368 20 6 6.2674 6.8144 -2.7494 21 6 6.2671 8.2174 -3.2994 22 7 5.3439 5.9597 -3.1435 23 6 5.3049 4.7223 -2.6888 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 3.9564 0.7805 -0.8892 28 1 3.9558 0.7809 0.8908 29 1 3.6102 3.2367 0.8894 30 1 3.6108 3.2357 -0.8906 31 1 8.5363 0.7844 0.5528 32 1 5.6886 2.2247 -1.9990 33 1 7.2099 2.4912 -1.1141 34 1 7.9702 4.8242 -0.6227 35 1 7.9885 7.1436 -1.5172 36 1 6.8763 8.2538 -4.2025 37 1 5.2456 8.5138 -3.5382 38 1 6.6789 8.8994 -2.5555 39 1 4.5335 4.0506 -3.0351 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877710396.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:41 Heat of formation + Delta-G solvation = -55.862639 kcal Electronic energy + Delta-G solvation = -21509.445039 eV Core-core repulsion = 18223.978401 eV Total energy + Delta-G solvation = -3285.466638 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.44024 -41.04488 -38.07470 -37.34515 -34.21986 -33.95455 -33.07531 -31.57700 -29.49001 -28.51333 -26.60459 -25.81231 -24.21736 -23.16684 -22.08572 -21.28489 -18.94379 -18.47310 -17.56628 -17.45215 -17.40283 -16.84082 -16.68253 -15.93951 -15.72475 -15.39224 -15.11454 -14.72722 -14.41007 -14.07854 -13.85690 -13.68857 -13.40082 -13.30102 -13.06695 -12.98722 -12.82182 -12.75246 -12.50617 -12.27829 -12.14246 -11.97898 -11.81026 -11.67359 -11.49729 -10.61414 -10.53472 -10.29833 -9.57177 -8.67797 -7.90158 -5.46739 0.30428 0.48465 1.20666 1.47179 1.50776 1.56071 1.83770 2.49884 2.92532 3.23249 3.52638 3.71581 3.96278 4.04183 4.16273 4.20706 4.22924 4.32344 4.34615 4.35134 4.42589 4.66408 4.70452 4.74623 4.80540 4.84025 4.86426 5.00446 5.03548 5.19952 5.25892 5.35588 5.41481 5.55951 5.68907 5.72341 5.95666 6.42669 6.77147 7.10612 7.14290 7.75408 8.30507 9.09160 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.010854 B = 0.006519 C = 0.004354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.178778 B = 4294.354700 C = 6429.046451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.369 6.369 3 C 0.472 3.528 4 O -0.540 6.540 5 C -0.119 4.119 6 C 0.166 3.834 7 N -0.581 5.581 8 C -0.272 4.272 9 H 0.052 0.948 10 C -0.017 4.017 11 N -0.904 5.904 12 Si 0.947 3.053 13 H -0.280 1.280 14 H -0.290 1.290 15 H -0.278 1.278 16 C 0.189 3.811 17 C -0.144 4.144 18 C -0.070 4.070 19 C -0.173 4.173 20 C 0.095 3.905 21 C -0.093 4.093 22 N -0.507 5.507 23 C 0.089 3.911 24 H 0.132 0.868 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.103 0.897 28 H 0.096 0.904 29 H 0.039 0.961 30 H 0.050 0.950 31 H 0.256 0.744 32 H 0.044 0.956 33 H 0.082 0.918 34 H 0.118 0.882 35 H 0.155 0.845 36 H 0.088 0.912 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.112 3.607 -4.772 7.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C 0.317 3.683 4 O -0.430 6.430 5 C -0.159 4.159 6 C 0.040 3.960 7 N -0.300 5.300 8 C -0.402 4.402 9 H 0.069 0.931 10 C -0.216 4.216 11 N -0.546 5.546 12 Si 0.775 3.225 13 H -0.205 1.205 14 H -0.216 1.216 15 H -0.204 1.204 16 C 0.062 3.938 17 C -0.149 4.149 18 C -0.097 4.097 19 C -0.192 4.192 20 C -0.044 4.044 21 C -0.150 4.150 22 N -0.217 5.217 23 C -0.068 4.068 24 H 0.150 0.850 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.121 0.879 28 H 0.114 0.886 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.100 0.900 34 H 0.136 0.864 35 H 0.173 0.827 36 H 0.106 0.894 37 H 0.091 0.909 38 H 0.110 0.890 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -5.828 4.033 -5.365 8.890 hybrid contribution 1.090 -0.451 1.520 1.924 sum -4.738 3.582 -3.846 7.076 Atomic orbital electron populations 1.23542 0.75071 1.05602 1.02455 1.86554 1.25011 1.33190 1.83781 1.24237 0.92420 0.81022 0.70672 1.90606 1.67944 1.37221 1.47208 1.22089 0.85195 1.03061 1.05565 1.20664 0.84232 0.91453 0.99672 1.43894 1.00212 1.83974 1.01908 1.19121 1.02950 1.26787 0.91352 0.93083 1.25640 1.01405 0.94989 0.99616 1.70077 1.22936 1.21150 1.40431 0.85680 0.78861 0.77964 0.79988 1.20542 1.21628 1.20396 1.19755 0.99910 0.88257 0.85828 1.22004 0.95578 1.00719 0.96555 1.21560 0.97536 0.93710 0.96868 1.22185 1.01071 0.96813 0.99173 1.21789 0.90820 0.97359 0.94396 1.20709 1.03723 0.88601 1.01954 1.67474 1.24451 1.03636 1.26176 1.22664 0.97290 0.92345 0.94487 0.85016 0.92156 0.91882 0.87885 0.88599 0.94264 0.93155 0.93475 0.93804 0.90049 0.86394 0.82732 0.89385 0.90941 0.88980 0.82838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 10.56 113.37 1.20 1.76 16 2 O -0.37 -11.09 10.57 -51.37 -0.54 -11.63 16 3 C 0.47 16.46 7.96 71.24 0.57 17.03 16 4 O -0.54 -20.99 15.73 21.96 0.35 -20.65 16 5 C -0.12 -4.42 6.14 29.85 0.18 -4.24 16 6 C 0.17 6.94 4.97 86.38 0.43 7.37 16 7 N -0.58 -26.99 2.42 -706.34 -1.71 -28.70 16 8 C -0.27 -13.91 9.47 84.03 0.80 -13.11 16 9 H 0.05 2.69 7.92 -2.91 -0.02 2.67 16 10 C -0.02 -0.89 4.90 84.86 0.42 -0.47 16 11 N -0.90 -47.82 11.47 21.65 0.25 -47.57 16 12 Si 0.95 41.60 29.60 68.60 2.03 43.64 16 13 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 14 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 15 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 16 C 0.19 8.28 5.38 85.63 0.46 8.75 16 17 C -0.14 -5.76 5.47 -19.77 -0.11 -5.86 16 18 C -0.07 -2.68 9.88 22.47 0.22 -2.45 16 19 C -0.17 -5.47 9.74 22.36 0.22 -5.26 16 20 C 0.09 2.96 6.78 42.56 0.29 3.25 16 21 C -0.09 -2.00 10.17 71.24 0.72 -1.27 16 22 N -0.51 -18.21 10.27 -183.89 -1.89 -20.10 16 23 C 0.09 3.31 10.77 84.67 0.91 4.22 16 24 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.06 1.29 8.13 -2.39 -0.02 1.27 16 26 H 0.06 1.31 8.13 -2.39 -0.02 1.29 16 27 H 0.10 3.70 8.14 -2.38 -0.02 3.68 16 28 H 0.10 3.83 8.14 -2.39 -0.02 3.81 16 29 H 0.04 1.73 8.00 -2.38 -0.02 1.71 16 30 H 0.05 2.03 7.96 -2.39 -0.02 2.01 16 31 H 0.26 13.21 8.31 -92.71 -0.77 12.43 16 32 H 0.04 1.81 8.04 -2.39 -0.02 1.79 16 33 H 0.08 4.04 5.49 -2.39 -0.01 4.03 16 34 H 0.12 4.75 8.06 -2.91 -0.02 4.72 16 35 H 0.16 3.81 8.06 -2.91 -0.02 3.78 16 36 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 38 H 0.09 1.56 8.08 -2.39 -0.02 1.54 16 39 H 0.15 5.22 8.06 -2.92 -0.02 5.20 16 Total: -1.00 -61.05 338.51 5.82 -55.23 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: 1.03 Total: 20.08 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: 6.31 Total: 9.71 kcal Atomic # 7 Polarization: -93.03 SS G_CDS: -3.35 Total: -96.38 kcal Atomic # 8 Polarization: -32.08 SS G_CDS: -0.20 Total: -32.28 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.64 kcal Total: -61.05 5.82 -55.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877710396.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.628 kcal (2) G-P(sol) polarization free energy of solvation -61.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds