Wall clock time and date at job start Tue Mar 31 2020 00:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34234 * 117.00051 * 2 1 4 4 O 1.20832 * 119.99502 * 0.02562 * 3 2 1 5 5 C 1.50691 * 120.00301 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.47340 * 180.02562 * 5 3 2 7 7 N 1.46503 * 109.47479 * 180.02562 * 6 5 3 8 8 C 1.36943 * 119.99567 * 269.99748 * 7 6 5 9 9 H 1.07995 * 119.99688 * 326.03916 * 8 7 6 10 10 C 1.38815 * 119.99460 * 146.03496 * 8 7 6 11 11 N 1.31612 * 120.00500 * 337.87859 * 10 8 7 12 12 Si 1.86808 * 119.99493 * 157.87594 * 10 8 7 13 13 H 1.48502 * 109.46929 * 90.00118 * 12 10 8 14 14 H 1.48500 * 109.46802 * 209.99920 * 12 10 8 15 15 H 1.48502 * 109.47073 * 330.00112 * 12 10 8 16 16 C 1.46495 * 120.00486 * 89.99394 * 7 6 5 17 17 C 1.50702 * 109.47118 * 84.32116 * 16 7 6 18 18 C 1.38222 * 119.62187 * 95.21471 * 17 16 7 19 19 C 1.38622 * 119.16293 * 180.27300 * 18 17 16 20 20 C 1.38665 * 118.42310 * 359.48361 * 19 18 17 21 21 C 1.38191 * 119.16312 * 0.25303 * 20 19 18 22 22 C 1.50700 * 119.62089 * 179.97438 * 21 20 19 23 23 N 1.31860 * 119.61734 * 274.96672 * 17 16 7 24 24 H 1.09001 * 109.47355 * 59.99809 * 1 2 3 25 25 H 1.09000 * 109.46801 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46911 * 299.99515 * 1 2 3 27 27 H 1.09002 * 109.47318 * 60.00357 * 5 3 2 28 28 H 1.09003 * 109.47561 * 300.00229 * 5 3 2 29 29 H 1.08994 * 109.47525 * 59.99963 * 6 5 3 30 30 H 1.09007 * 109.46979 * 299.99716 * 6 5 3 31 31 H 0.97000 * 120.00059 * 180.02562 * 11 10 8 32 32 H 1.09000 * 109.47060 * 324.32567 * 16 7 6 33 33 H 1.08993 * 109.47467 * 204.32107 * 16 7 6 34 34 H 1.08003 * 120.41305 * 0.02562 * 18 17 16 35 35 H 1.08008 * 120.79109 * 179.76075 * 19 18 17 36 36 H 1.07998 * 120.42384 * 180.27164 * 20 19 18 37 37 H 1.08994 * 109.46877 * 89.99746 * 22 21 20 38 38 H 1.08994 * 109.47098 * 210.00241 * 22 21 20 39 39 H 1.09006 * 109.46752 * 329.99862 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.0001 2.7421 0.0002 7 7 5.4631 2.8189 -0.0010 8 6 6.1478 2.8539 1.1845 9 1 5.7197 3.3540 2.0406 10 6 7.3919 2.2465 1.2855 11 7 7.7298 1.2943 0.4422 12 14 8.5865 2.7809 2.6185 13 1 8.3647 1.9638 3.8385 14 1 9.9794 2.5890 2.1407 15 1 8.3651 4.2146 2.9359 16 6 6.1936 2.8582 -1.2702 17 6 6.2483 4.2772 -1.7746 18 6 7.3536 5.0591 -1.4960 19 6 7.3914 6.3649 -1.9598 20 6 6.3162 6.8342 -2.6991 21 6 5.2478 5.9923 -2.9427 22 6 4.0736 6.4918 -3.7444 23 7 5.2435 4.7570 -2.4809 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 3.9557 0.7811 -0.8909 28 1 3.9565 0.7807 0.8891 29 1 3.6108 3.2357 0.8906 30 1 3.6100 3.2368 -0.8894 31 1 8.5990 0.8696 0.5131 32 1 5.6839 2.2318 -2.0023 33 1 7.2071 2.4874 -1.1177 34 1 8.1754 4.6590 -0.9208 35 1 8.2403 7.0003 -1.7542 36 1 6.3139 7.8448 -3.0799 37 1 4.2428 6.2884 -4.8018 38 1 3.1672 5.9828 -3.4170 39 1 3.9617 7.5657 -3.5943 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879472238.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:49 Heat of formation + Delta-G solvation = -38.514862 kcal Electronic energy + Delta-G solvation = -21644.303711 eV Core-core repulsion = 18359.589328 eV Total energy + Delta-G solvation = -3284.714382 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.98603 -39.59207 -36.41563 -35.71874 -32.61777 -32.08602 -31.92047 -29.83905 -27.80521 -27.18121 -25.81198 -24.32230 -22.12052 -21.58900 -20.70331 -19.65008 -17.28171 -16.85837 -16.14778 -16.01278 -15.76765 -15.60320 -14.84948 -14.36273 -14.21352 -13.85100 -13.62316 -13.21348 -12.89837 -12.70115 -12.53149 -12.13189 -12.06283 -11.86889 -11.82943 -11.49216 -11.26407 -11.03809 -10.78043 -10.53756 -10.52241 -10.23747 -10.16195 -9.98312 -9.88276 -9.21684 -8.83811 -8.56527 -8.16052 -6.80855 -5.95950 -3.46476 1.75112 1.90269 2.70261 3.15552 3.28773 3.37217 3.41709 4.31544 4.45397 4.84928 5.16182 5.20645 5.24175 5.27682 5.30913 5.46514 5.54290 5.60065 5.74475 5.77668 5.85418 5.89912 5.93659 6.06307 6.08939 6.34559 6.41316 6.46388 6.60456 6.74979 6.77055 6.79394 6.97681 7.07552 7.36225 7.50764 7.71130 8.20722 8.35139 8.76494 9.02681 9.65066 10.22518 11.06565 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.010456 B = 0.007213 C = 0.004550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.360043 B = 3880.924804 C = 6152.772899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.366 6.366 3 C 0.463 3.537 4 O -0.517 6.517 5 C -0.129 4.129 6 C 0.161 3.839 7 N -0.567 5.567 8 C -0.261 4.261 9 H 0.065 0.935 10 C 0.013 3.987 11 N -0.884 5.884 12 Si 0.895 3.105 13 H -0.284 1.284 14 H -0.287 1.287 15 H -0.277 1.277 16 C 0.185 3.815 17 C 0.140 3.860 18 C -0.160 4.160 19 C -0.081 4.081 20 C -0.198 4.198 21 C 0.115 3.885 22 C -0.098 4.098 23 N -0.483 5.483 24 H 0.058 0.942 25 H 0.094 0.906 26 H 0.058 0.942 27 H 0.097 0.903 28 H 0.106 0.894 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.258 0.742 32 H 0.043 0.957 33 H 0.117 0.883 34 H 0.130 0.870 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.607 3.395 -5.337 8.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.283 6.283 3 C 0.306 3.694 4 O -0.405 6.405 5 C -0.169 4.169 6 C 0.034 3.966 7 N -0.285 5.285 8 C -0.390 4.390 9 H 0.082 0.918 10 C -0.187 4.187 11 N -0.526 5.526 12 Si 0.723 3.277 13 H -0.211 1.211 14 H -0.213 1.213 15 H -0.202 1.202 16 C 0.058 3.942 17 C 0.000 4.000 18 C -0.181 4.181 19 C -0.107 4.107 20 C -0.218 4.218 21 C -0.023 4.023 22 C -0.156 4.156 23 N -0.194 5.194 24 H 0.077 0.923 25 H 0.112 0.888 26 H 0.077 0.923 27 H 0.115 0.885 28 H 0.124 0.876 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.135 0.865 34 H 0.148 0.852 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.390 3.033 -5.493 8.956 hybrid contribution 1.246 0.878 0.953 1.798 sum -5.144 3.911 -4.540 7.897 Atomic orbital electron populations 1.23144 0.77784 1.02937 1.02111 1.86597 1.22473 1.34784 1.84484 1.24651 0.92922 0.80677 0.71115 1.90608 1.67556 1.36391 1.45982 1.22382 0.84026 1.04807 1.05699 1.20800 0.84965 0.90194 1.00657 1.43760 0.99783 1.83052 1.01901 1.19148 1.00782 1.28877 0.90206 0.91753 1.25094 1.00213 0.95329 0.98068 1.69953 1.21655 1.22207 1.38761 0.86427 0.80567 0.78966 0.81695 1.21065 1.21278 1.20248 1.20110 1.01954 0.85949 0.86166 1.22964 0.87516 1.00243 0.89258 1.22015 1.00532 0.94434 1.01121 1.21480 0.97761 0.95694 0.95798 1.21685 0.95943 1.00684 1.03497 1.21210 0.94943 0.90264 0.95867 1.20626 0.95842 1.00374 0.98730 1.67497 1.27883 1.13570 1.10492 0.92328 0.88752 0.92327 0.88466 0.87563 0.93139 0.92459 0.93175 0.93878 0.86533 0.85178 0.85933 0.86161 0.91168 0.90797 0.91508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.56 101.05 1.07 1.49 16 2 O -0.37 -5.98 10.57 -39.27 -0.41 -6.40 16 3 C 0.46 8.56 7.96 36.00 0.29 8.85 16 4 O -0.52 -10.59 15.73 -18.75 -0.30 -10.88 16 5 C -0.13 -2.51 6.13 -27.89 -0.17 -2.68 16 6 C 0.16 3.52 4.98 -4.04 -0.02 3.50 16 7 N -0.57 -13.57 2.44 -174.61 -0.43 -13.99 16 8 C -0.26 -6.72 9.49 -15.06 -0.14 -6.86 16 9 H 0.06 1.69 7.92 -52.49 -0.42 1.27 16 10 C 0.01 0.34 4.92 -17.43 -0.09 0.26 16 11 N -0.88 -23.26 11.34 55.49 0.63 -22.63 16 12 Si 0.89 20.32 29.61 -169.99 -5.03 15.29 16 13 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 14 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 15 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 16 C 0.19 4.25 5.54 -5.20 -0.03 4.22 16 17 C 0.14 2.99 6.35 -82.58 -0.52 2.47 16 18 C -0.16 -3.14 9.72 -39.45 -0.38 -3.53 16 19 C -0.08 -1.35 10.17 -39.28 -0.40 -1.75 16 20 C -0.20 -3.11 9.74 -39.44 -0.38 -3.50 16 21 C 0.12 2.00 6.78 -82.59 -0.56 1.44 16 22 C -0.10 -1.31 10.17 36.01 0.37 -0.94 16 23 N -0.48 -9.86 10.15 -5.74 -0.06 -9.92 16 24 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 25 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 27 H 0.10 1.87 8.14 -51.93 -0.42 1.44 16 28 H 0.11 2.15 8.14 -51.93 -0.42 1.73 16 29 H 0.05 1.14 8.00 -51.93 -0.42 0.73 16 30 H 0.06 1.28 7.99 -51.92 -0.41 0.86 16 31 H 0.26 6.58 8.31 -40.82 -0.34 6.24 16 32 H 0.04 0.97 8.11 -51.93 -0.42 0.55 16 33 H 0.12 2.89 5.24 -51.93 -0.27 2.62 16 34 H 0.13 2.57 8.06 -52.48 -0.42 2.15 16 35 H 0.12 1.65 8.06 -52.48 -0.42 1.23 16 36 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16 LS Contribution 338.48 15.07 5.10 5.10 Total: -1.00 -29.20 338.48 -7.20 -36.40 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -5.72 Total: 4.06 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: -0.98 Total: 2.96 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: 0.15 Total: -46.54 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -0.71 Total: -17.28 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.03 Total: 15.29 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.20 -7.20 -36.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879472238.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.117 kcal (2) G-P(sol) polarization free energy of solvation -29.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds