Wall clock time and date at job start Tue Mar 31 2020 00:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34234 * 117.00051 * 2 1 4 4 O 1.20832 * 119.99502 * 0.02562 * 3 2 1 5 5 C 1.50691 * 120.00301 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.47340 * 180.02562 * 5 3 2 7 7 N 1.46503 * 109.47479 * 180.02562 * 6 5 3 8 8 C 1.36943 * 119.99567 * 269.99748 * 7 6 5 9 9 H 1.07995 * 119.99688 * 326.03916 * 8 7 6 10 10 C 1.38815 * 119.99460 * 146.03496 * 8 7 6 11 11 N 1.31612 * 120.00500 * 337.87859 * 10 8 7 12 12 Si 1.86808 * 119.99493 * 157.87594 * 10 8 7 13 13 H 1.48502 * 109.46929 * 90.00118 * 12 10 8 14 14 H 1.48500 * 109.46802 * 209.99920 * 12 10 8 15 15 H 1.48502 * 109.47073 * 330.00112 * 12 10 8 16 16 C 1.46495 * 120.00486 * 89.99394 * 7 6 5 17 17 C 1.50702 * 109.47118 * 84.32116 * 16 7 6 18 18 C 1.38222 * 119.62187 * 95.21471 * 17 16 7 19 19 C 1.38622 * 119.16293 * 180.27300 * 18 17 16 20 20 C 1.38665 * 118.42310 * 359.48361 * 19 18 17 21 21 C 1.38191 * 119.16312 * 0.25303 * 20 19 18 22 22 C 1.50700 * 119.62089 * 179.97438 * 21 20 19 23 23 N 1.31860 * 119.61734 * 274.96672 * 17 16 7 24 24 H 1.09001 * 109.47355 * 59.99809 * 1 2 3 25 25 H 1.09000 * 109.46801 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46911 * 299.99515 * 1 2 3 27 27 H 1.09002 * 109.47318 * 60.00357 * 5 3 2 28 28 H 1.09003 * 109.47561 * 300.00229 * 5 3 2 29 29 H 1.08994 * 109.47525 * 59.99963 * 6 5 3 30 30 H 1.09007 * 109.46979 * 299.99716 * 6 5 3 31 31 H 0.97000 * 120.00059 * 180.02562 * 11 10 8 32 32 H 1.09000 * 109.47060 * 324.32567 * 16 7 6 33 33 H 1.08993 * 109.47467 * 204.32107 * 16 7 6 34 34 H 1.08003 * 120.41305 * 0.02562 * 18 17 16 35 35 H 1.08008 * 120.79109 * 179.76075 * 19 18 17 36 36 H 1.07998 * 120.42384 * 180.27164 * 20 19 18 37 37 H 1.08994 * 109.46877 * 89.99746 * 22 21 20 38 38 H 1.08994 * 109.47098 * 210.00241 * 22 21 20 39 39 H 1.09006 * 109.46752 * 329.99862 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.0001 2.7421 0.0002 7 7 5.4631 2.8189 -0.0010 8 6 6.1478 2.8539 1.1845 9 1 5.7197 3.3540 2.0406 10 6 7.3919 2.2465 1.2855 11 7 7.7298 1.2943 0.4422 12 14 8.5865 2.7809 2.6185 13 1 8.3647 1.9638 3.8385 14 1 9.9794 2.5890 2.1407 15 1 8.3651 4.2146 2.9359 16 6 6.1936 2.8582 -1.2702 17 6 6.2483 4.2772 -1.7746 18 6 7.3536 5.0591 -1.4960 19 6 7.3914 6.3649 -1.9598 20 6 6.3162 6.8342 -2.6991 21 6 5.2478 5.9923 -2.9427 22 6 4.0736 6.4918 -3.7444 23 7 5.2435 4.7570 -2.4809 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 3.9557 0.7811 -0.8909 28 1 3.9565 0.7807 0.8891 29 1 3.6108 3.2357 0.8906 30 1 3.6100 3.2368 -0.8894 31 1 8.5990 0.8696 0.5131 32 1 5.6839 2.2318 -2.0023 33 1 7.2071 2.4874 -1.1177 34 1 8.1754 4.6590 -0.9208 35 1 8.2403 7.0003 -1.7542 36 1 6.3139 7.8448 -3.0799 37 1 4.2428 6.2884 -4.8018 38 1 3.1672 5.9828 -3.4170 39 1 3.9617 7.5657 -3.5943 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879472238.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:48 Heat of formation + Delta-G solvation = -54.286036 kcal Electronic energy + Delta-G solvation = -21644.987600 eV Core-core repulsion = 18359.589328 eV Total energy + Delta-G solvation = -3285.398272 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.44740 -41.01128 -38.01624 -37.31768 -34.02678 -33.92780 -33.34410 -31.50283 -29.14076 -28.46260 -27.41422 -26.01663 -23.67944 -22.97996 -22.23790 -21.29136 -18.96740 -18.49873 -17.56040 -17.44142 -17.16701 -17.02933 -16.67847 -15.85897 -15.77650 -15.46152 -15.05286 -14.68580 -14.42265 -14.05397 -13.83972 -13.68506 -13.40402 -13.26092 -13.04259 -12.95174 -12.81660 -12.74872 -12.41442 -12.33807 -12.05274 -12.03102 -11.81642 -11.67298 -11.50538 -10.62823 -10.59613 -10.18952 -9.57323 -8.71531 -7.90555 -5.45567 0.34673 0.52956 1.19420 1.46347 1.50592 1.59143 1.82262 2.50021 2.93754 3.22066 3.55039 3.72528 3.98302 4.01265 4.13059 4.22095 4.33093 4.33321 4.34669 4.38117 4.43550 4.69197 4.75181 4.78418 4.80630 4.84316 4.87689 5.00413 5.02176 5.20722 5.26258 5.36711 5.39642 5.50659 5.61747 5.67601 6.01560 6.40189 6.76170 7.08551 7.32176 7.73999 8.30059 9.09919 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.010456 B = 0.007213 C = 0.004550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.360043 B = 3880.924804 C = 6152.772899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.369 6.369 3 C 0.473 3.527 4 O -0.539 6.539 5 C -0.118 4.118 6 C 0.169 3.831 7 N -0.578 5.578 8 C -0.274 4.274 9 H 0.053 0.947 10 C -0.020 4.020 11 N -0.906 5.906 12 Si 0.951 3.049 13 H -0.284 1.284 14 H -0.284 1.284 15 H -0.277 1.277 16 C 0.195 3.805 17 C 0.115 3.885 18 C -0.182 4.182 19 C -0.076 4.076 20 C -0.185 4.185 21 C 0.101 3.899 22 C -0.094 4.094 23 N -0.510 5.510 24 H 0.062 0.938 25 H 0.133 0.867 26 H 0.061 0.939 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.037 0.963 30 H 0.049 0.951 31 H 0.257 0.743 32 H 0.033 0.967 33 H 0.096 0.904 34 H 0.118 0.882 35 H 0.159 0.841 36 H 0.165 0.835 37 H 0.088 0.912 38 H 0.061 0.939 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.017 4.985 -5.999 9.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C 0.318 3.682 4 O -0.429 6.429 5 C -0.158 4.158 6 C 0.042 3.958 7 N -0.297 5.297 8 C -0.404 4.404 9 H 0.071 0.929 10 C -0.218 4.218 11 N -0.548 5.548 12 Si 0.779 3.221 13 H -0.210 1.210 14 H -0.210 1.210 15 H -0.202 1.202 16 C 0.068 3.932 17 C -0.024 4.024 18 C -0.203 4.203 19 C -0.101 4.101 20 C -0.205 4.205 21 C -0.038 4.038 22 C -0.152 4.152 23 N -0.222 5.222 24 H 0.081 0.919 25 H 0.151 0.849 26 H 0.079 0.921 27 H 0.117 0.883 28 H 0.116 0.884 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.051 0.949 33 H 0.113 0.887 34 H 0.136 0.864 35 H 0.176 0.824 36 H 0.183 0.817 37 H 0.106 0.894 38 H 0.080 0.920 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.816 4.609 -6.163 10.280 hybrid contribution 1.263 0.426 1.068 1.708 sum -5.553 5.035 -5.094 9.063 Atomic orbital electron populations 1.23552 0.75000 1.05655 1.02471 1.86553 1.25084 1.33059 1.83803 1.24162 0.92307 0.81073 0.70690 1.90598 1.67875 1.37249 1.47158 1.22052 0.85457 1.02967 1.05369 1.20622 0.84163 0.91471 0.99494 1.43837 1.00330 1.83761 1.01791 1.19207 1.01529 1.28972 0.90662 0.92900 1.25626 1.01096 0.95234 0.99869 1.70053 1.21781 1.22943 1.40053 0.85554 0.78744 0.78340 0.79464 1.21016 1.20999 1.20242 1.19831 1.00277 0.87521 0.85572 1.22562 0.89012 0.99561 0.91248 1.21999 0.99898 0.96132 1.02247 1.21878 0.99168 0.94506 0.94580 1.22171 0.94430 1.02198 1.01668 1.21975 0.96830 0.89432 0.95541 1.20722 0.93518 1.01940 0.98971 1.67426 1.27898 1.15643 1.11242 0.91942 0.84903 0.92068 0.88312 0.88382 0.94473 0.93222 0.93312 0.94867 0.88678 0.86435 0.82382 0.81737 0.89361 0.92043 0.88397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.56 113.37 1.20 1.79 16 2 O -0.37 -11.68 10.57 -51.45 -0.54 -12.22 16 3 C 0.47 17.60 7.96 71.23 0.57 18.17 16 4 O -0.54 -22.15 15.73 21.95 0.35 -21.81 16 5 C -0.12 -4.76 6.13 29.84 0.18 -4.57 16 6 C 0.17 7.71 4.98 86.38 0.43 8.14 16 7 N -0.58 -28.86 2.44 -706.35 -1.72 -30.58 16 8 C -0.27 -14.61 9.49 84.03 0.80 -13.81 16 9 H 0.05 2.88 7.92 -2.91 -0.02 2.86 16 10 C -0.02 -1.03 4.92 84.86 0.42 -0.61 16 11 N -0.91 -49.02 11.34 21.65 0.25 -48.78 16 12 Si 0.95 42.43 29.61 68.60 2.03 44.46 16 13 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 14 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 15 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 16 C 0.19 9.38 5.54 85.63 0.47 9.85 16 17 C 0.12 5.04 6.35 42.55 0.27 5.31 16 18 C -0.18 -7.18 9.72 22.36 0.22 -6.96 16 19 C -0.08 -2.32 10.17 22.46 0.23 -2.10 16 20 C -0.18 -5.17 9.74 22.36 0.22 -4.95 16 21 C 0.10 3.29 6.78 42.54 0.29 3.58 16 22 C -0.09 -2.24 10.17 71.24 0.72 -1.52 16 23 N -0.51 -20.93 10.15 -172.07 -1.75 -22.67 16 24 H 0.06 1.38 8.13 -2.39 -0.02 1.36 16 25 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.06 1.36 8.13 -2.39 -0.02 1.34 16 27 H 0.10 3.93 8.14 -2.39 -0.02 3.91 16 28 H 0.10 4.12 8.14 -2.39 -0.02 4.10 16 29 H 0.04 1.75 8.00 -2.39 -0.02 1.74 16 30 H 0.05 2.31 7.99 -2.38 -0.02 2.29 16 31 H 0.26 13.43 8.31 -92.71 -0.77 12.65 16 32 H 0.03 1.59 8.11 -2.39 -0.02 1.57 16 33 H 0.10 4.98 5.24 -2.39 -0.01 4.97 16 34 H 0.12 4.81 8.06 -2.91 -0.02 4.78 16 35 H 0.16 3.66 8.06 -2.91 -0.02 3.63 16 36 H 0.17 3.15 8.06 -2.91 -0.02 3.12 16 37 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.10 1.71 8.08 -2.38 -0.02 1.69 16 Total: -1.00 -64.77 338.48 5.65 -59.11 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: 1.03 Total: 20.18 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: 6.01 Total: 12.31 kcal Atomic # 7 Polarization: -98.81 SS G_CDS: -3.22 Total: -102.03 kcal Atomic # 8 Polarization: -33.83 SS G_CDS: -0.20 Total: -34.03 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -64.77 5.65 -59.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879472238.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.826 kcal (2) G-P(sol) polarization free energy of solvation -64.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds