Wall clock time and date at job start Tue Mar 31 2020 00:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34226 * 116.99791 * 2 1 4 4 O 1.20827 * 120.00558 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99834 * 180.02562 * 3 2 1 6 6 C 1.53003 * 109.47345 * 180.02562 * 5 3 2 7 7 N 1.46503 * 109.47275 * 180.02562 * 6 5 3 8 8 C 1.36928 * 119.99943 * 269.50427 * 7 6 5 9 9 H 1.08000 * 120.00235 * 325.96228 * 8 7 6 10 10 C 1.38816 * 120.00128 * 145.96564 * 8 7 6 11 11 N 1.31614 * 119.99621 * 336.72375 * 10 8 7 12 12 Si 1.86803 * 120.00228 * 156.72570 * 10 8 7 13 13 H 1.48498 * 109.46958 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.46732 * 120.00127 * 12 10 8 15 15 H 1.48492 * 109.46971 * 239.99933 * 12 10 8 16 16 C 1.46503 * 119.99759 * 89.50710 * 7 6 5 17 17 C 1.50695 * 109.47156 * 89.99945 * 16 7 6 18 18 C 1.38227 * 119.62056 * 94.73021 * 17 16 7 19 19 C 1.38622 * 119.16257 * 179.70584 * 18 17 16 20 20 C 1.50698 * 120.79146 * 180.29901 * 19 18 17 21 21 C 1.38670 * 118.41950 * 0.55347 * 19 18 17 22 22 C 1.38187 * 119.16522 * 359.72381 * 21 19 18 23 23 N 1.31856 * 119.61679 * 274.99351 * 17 16 7 24 24 H 1.08994 * 109.47492 * 59.99690 * 1 2 3 25 25 H 1.08994 * 109.47108 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46804 * 299.99864 * 1 2 3 27 27 H 1.09001 * 109.46928 * 59.99980 * 5 3 2 28 28 H 1.08998 * 109.47341 * 300.00076 * 5 3 2 29 29 H 1.09001 * 109.47136 * 60.00092 * 6 5 3 30 30 H 1.08998 * 109.46950 * 300.00300 * 6 5 3 31 31 H 0.97006 * 119.99924 * 179.97438 * 11 10 8 32 32 H 1.09005 * 109.46587 * 210.00279 * 16 7 6 33 33 H 1.09004 * 109.46790 * 329.99218 * 16 7 6 34 34 H 1.08004 * 120.41808 * 359.97438 * 18 17 16 35 35 H 1.09004 * 109.47665 * 270.25660 * 20 19 18 36 36 H 1.08996 * 109.47043 * 30.25584 * 20 19 18 37 37 H 1.08997 * 109.47173 * 150.25302 * 20 19 18 38 38 H 1.08003 * 120.41975 * 179.75609 * 21 19 18 39 39 H 1.08000 * 119.61784 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 0.0002 7 7 5.4632 2.8188 -0.0010 8 6 6.1473 2.8639 1.1842 9 1 5.7196 3.3724 2.0357 10 6 7.3907 2.2561 1.2915 11 7 7.7191 1.2803 0.4717 12 14 8.5979 2.8232 2.5995 13 1 7.9922 3.9271 3.3868 14 1 8.9185 1.6886 3.5023 15 1 9.8426 3.3050 1.9487 16 6 6.1941 2.8472 -1.2703 17 6 6.3704 4.2757 -1.7166 18 6 7.5346 4.9511 -1.4018 19 6 7.6893 6.2629 -1.8224 20 6 8.9461 7.0315 -1.5053 21 6 6.6578 6.8528 -2.5372 22 6 5.5203 6.1168 -2.8096 23 7 5.4101 4.8686 -2.3985 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 3.9556 0.7809 -0.8908 28 1 3.9564 0.7806 0.8891 29 1 3.6108 3.2356 0.8907 30 1 3.6100 3.2368 -0.8893 31 1 8.5881 0.8558 0.5464 32 1 7.1722 2.3848 -1.1367 33 1 5.6324 2.2972 -2.0254 34 1 8.3156 4.4616 -0.8390 35 1 8.8277 7.5440 -0.5506 36 1 9.7882 6.3421 -1.4455 37 1 9.1317 7.7644 -2.2905 38 1 6.7424 7.8744 -2.8772 39 1 4.7127 6.5689 -3.3661 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879473942.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:35 Heat of formation + Delta-G solvation = -55.436192 kcal Electronic energy + Delta-G solvation = -21593.602780 eV Core-core repulsion = 18308.154634 eV Total energy + Delta-G solvation = -3285.448146 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.44255 -40.99241 -38.00458 -37.30762 -34.73944 -33.95259 -32.95763 -31.17875 -28.68781 -28.50000 -27.77121 -26.00358 -23.98357 -23.14909 -21.81562 -21.23578 -18.91032 -18.47146 -17.55873 -17.43291 -17.34715 -16.90884 -16.64933 -16.06522 -15.76362 -15.46429 -14.97098 -14.63553 -14.50569 -14.15306 -13.70097 -13.64976 -13.49498 -13.33769 -13.25335 -13.10416 -12.81548 -12.75965 -12.38403 -12.24812 -12.02533 -11.99849 -11.81332 -11.67388 -11.50115 -10.62506 -10.26052 -10.20250 -9.73656 -8.71806 -7.89299 -5.45595 0.37983 0.49786 1.20077 1.44139 1.49738 1.58619 1.82709 2.49745 2.96313 3.22083 3.69405 3.73599 3.91209 3.97980 4.07860 4.22101 4.31814 4.33509 4.34967 4.39680 4.45696 4.66854 4.69617 4.75911 4.77485 4.79928 4.87323 5.02596 5.08087 5.15770 5.21522 5.35869 5.42295 5.55168 5.60207 5.69047 6.02206 6.40367 6.76758 7.08612 7.31723 7.74231 8.30099 9.09533 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013551 B = 0.006037 C = 0.004449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.798974 B = 4637.228767 C = 6291.535394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.368 6.368 3 C 0.473 3.527 4 O -0.539 6.539 5 C -0.118 4.118 6 C 0.169 3.831 7 N -0.578 5.578 8 C -0.272 4.272 9 H 0.052 0.948 10 C -0.017 4.017 11 N -0.903 5.903 12 Si 0.946 3.054 13 H -0.276 1.276 14 H -0.289 1.289 15 H -0.281 1.281 16 C 0.190 3.810 17 C 0.117 3.883 18 C -0.175 4.175 19 C -0.054 4.054 20 C -0.110 4.110 21 C -0.185 4.185 22 C 0.084 3.916 23 N -0.515 5.515 24 H 0.062 0.938 25 H 0.133 0.867 26 H 0.060 0.940 27 H 0.100 0.900 28 H 0.098 0.902 29 H 0.038 0.962 30 H 0.049 0.951 31 H 0.257 0.743 32 H 0.095 0.905 33 H 0.038 0.962 34 H 0.112 0.888 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.095 0.905 38 H 0.165 0.835 39 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.647 5.010 -5.001 7.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C 0.318 3.682 4 O -0.429 6.429 5 C -0.159 4.159 6 C 0.043 3.957 7 N -0.297 5.297 8 C -0.402 4.402 9 H 0.069 0.931 10 C -0.216 4.216 11 N -0.545 5.545 12 Si 0.774 3.226 13 H -0.201 1.201 14 H -0.215 1.215 15 H -0.207 1.207 16 C 0.063 3.937 17 C -0.022 4.022 18 C -0.196 4.196 19 C -0.062 4.062 20 C -0.166 4.166 21 C -0.205 4.205 22 C -0.073 4.073 23 N -0.227 5.227 24 H 0.081 0.919 25 H 0.151 0.849 26 H 0.079 0.921 27 H 0.118 0.882 28 H 0.116 0.884 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.112 0.888 33 H 0.057 0.943 34 H 0.130 0.870 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.114 0.886 38 H 0.182 0.818 39 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -4.491 4.699 -5.174 8.307 hybrid contribution 1.118 0.417 1.005 1.560 sum -3.373 5.115 -4.169 7.411 Atomic orbital electron populations 1.23548 0.75026 1.05645 1.02459 1.86551 1.25056 1.33059 1.83795 1.24173 0.92328 0.81062 0.70680 1.90599 1.67904 1.37254 1.47178 1.22066 0.85415 1.02923 1.05453 1.20632 0.84092 0.91488 0.99529 1.43841 1.00327 1.83745 1.01748 1.19200 1.01547 1.28525 0.90902 0.93071 1.25569 1.01090 0.95174 0.99790 1.70053 1.21827 1.21812 1.40848 0.85566 0.79622 0.77938 0.79489 1.20108 1.21535 1.20669 1.19887 1.00089 0.87908 0.85830 1.22521 0.89049 0.99414 0.91212 1.21875 0.99404 0.96116 1.02184 1.20715 0.97600 0.93361 0.94503 1.20843 0.92685 0.99828 1.03261 1.22229 0.94313 1.02357 1.01609 1.23250 0.97798 0.89719 0.96555 1.67559 1.30576 1.12472 1.12049 0.91941 0.84911 0.92099 0.88185 0.88363 0.94387 0.93284 0.93337 0.88806 0.94311 0.87004 0.90159 0.91424 0.88632 0.81751 0.80715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.56 113.37 1.20 1.78 16 2 O -0.37 -11.59 10.57 -51.38 -0.54 -12.14 16 3 C 0.47 17.48 7.96 71.24 0.57 18.05 16 4 O -0.54 -22.10 15.73 21.96 0.35 -21.75 16 5 C -0.12 -4.72 6.14 29.85 0.18 -4.53 16 6 C 0.17 7.66 4.96 86.38 0.43 8.09 16 7 N -0.58 -28.71 2.43 -706.32 -1.72 -30.43 16 8 C -0.27 -14.49 9.48 84.04 0.80 -13.69 16 9 H 0.05 2.81 7.93 -2.91 -0.02 2.79 16 10 C -0.02 -0.91 4.94 84.86 0.42 -0.49 16 11 N -0.90 -48.65 11.34 21.65 0.25 -48.41 16 12 Si 0.95 42.35 29.61 68.60 2.03 44.38 16 13 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 14 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 15 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 16 C 0.19 9.08 5.60 85.63 0.48 9.56 16 17 C 0.12 5.11 6.36 42.55 0.27 5.38 16 18 C -0.17 -7.04 9.43 22.36 0.21 -6.83 16 19 C -0.05 -1.70 5.92 -19.67 -0.12 -1.81 16 20 C -0.11 -2.53 10.06 71.24 0.72 -1.81 16 21 C -0.19 -5.16 9.82 22.36 0.22 -4.94 16 22 C 0.08 2.69 11.18 84.67 0.95 3.63 16 23 N -0.52 -21.04 10.27 -183.89 -1.89 -22.93 16 24 H 0.06 1.37 8.13 -2.39 -0.02 1.35 16 25 H 0.13 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.06 1.35 8.13 -2.38 -0.02 1.33 16 27 H 0.10 3.92 8.14 -2.39 -0.02 3.90 16 28 H 0.10 4.10 8.14 -2.39 -0.02 4.08 16 29 H 0.04 1.79 7.99 -2.39 -0.02 1.77 16 30 H 0.05 2.25 8.03 -2.39 -0.02 2.23 16 31 H 0.26 13.32 8.31 -92.70 -0.77 12.55 16 32 H 0.09 4.91 5.23 -2.38 -0.01 4.90 16 33 H 0.04 1.82 8.07 -2.39 -0.02 1.80 16 34 H 0.11 4.79 8.06 -2.91 -0.02 4.76 16 35 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.07 1.57 8.10 -2.39 -0.02 1.55 16 37 H 0.09 1.62 8.10 -2.39 -0.02 1.60 16 38 H 0.16 3.13 8.06 -2.91 -0.02 3.11 16 39 H 0.18 4.27 8.06 -2.91 -0.02 4.25 16 Total: -1.00 -64.39 338.47 5.82 -58.56 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: 1.03 Total: 20.33 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: 6.32 Total: 12.38 kcal Atomic # 7 Polarization: -98.41 SS G_CDS: -3.36 Total: -101.77 kcal Atomic # 8 Polarization: -33.69 SS G_CDS: -0.20 Total: -33.89 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -64.39 5.82 -58.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879473942.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.128 kcal (2) G-P(sol) polarization free energy of solvation -64.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds