Wall clock time and date at job start Tue Mar 31 2020 00:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34228 * 117.00077 * 2 1 4 4 O 1.20826 * 119.99817 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00033 * 180.02562 * 3 2 1 6 6 C 1.53000 * 109.47314 * 180.02562 * 5 3 2 7 7 N 1.46496 * 109.47053 * 180.02562 * 6 5 3 8 8 C 1.36932 * 120.00343 * 90.00250 * 7 6 5 9 9 H 1.08005 * 119.99824 * 324.20658 * 8 7 6 10 10 C 1.38805 * 120.00552 * 143.93235 * 8 7 6 11 11 N 1.31618 * 120.00171 * 52.73891 * 10 8 7 12 12 Si 1.86803 * 120.00384 * 232.74436 * 10 8 7 13 13 H 1.48499 * 109.47081 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47259 * 119.99818 * 12 10 8 15 15 H 1.48498 * 109.47117 * 239.99835 * 12 10 8 16 16 C 1.46505 * 120.00135 * 269.99853 * 7 6 5 17 17 C 1.50699 * 109.47171 * 97.94361 * 16 7 6 18 18 C 1.38223 * 120.41797 * 264.34705 * 17 16 7 19 19 N 1.31862 * 120.75904 * 179.73329 * 18 17 16 20 20 C 1.31877 * 121.72605 * 0.57906 * 19 18 17 21 21 C 1.38182 * 120.76670 * 359.68271 * 20 19 18 22 22 C 1.50701 * 120.42184 * 180.02562 * 21 20 19 23 23 C 1.38633 * 120.41566 * 84.62648 * 17 16 7 24 24 H 1.09001 * 109.46750 * 299.99694 * 1 2 3 25 25 H 1.08989 * 109.46992 * 59.99638 * 1 2 3 26 26 H 1.09000 * 109.46915 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47123 * 59.99667 * 5 3 2 28 28 H 1.09002 * 109.47196 * 300.00143 * 5 3 2 29 29 H 1.08999 * 109.46717 * 59.99835 * 6 5 3 30 30 H 1.09002 * 109.46996 * 300.00131 * 6 5 3 31 31 H 0.96996 * 120.00491 * 179.97438 * 11 10 8 32 32 H 1.09003 * 109.47161 * 217.95065 * 16 7 6 33 33 H 1.09006 * 109.46917 * 337.94145 * 16 7 6 34 34 H 1.07997 * 119.62179 * 0.02562 * 18 17 16 35 35 H 1.07998 * 119.61895 * 179.70839 * 20 19 18 36 36 H 1.09005 * 109.46994 * 269.98421 * 22 21 20 37 37 H 1.09000 * 109.46830 * 29.97407 * 22 21 20 38 38 H 1.08997 * 109.47431 * 149.98031 * 22 21 20 39 39 H 1.07994 * 120.78964 * 359.95912 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0002 2.7420 0.0002 7 7 5.4632 2.8186 -0.0010 8 6 6.1459 2.8554 -1.1874 9 1 5.7873 2.2895 -2.0346 10 6 7.2958 3.6243 -1.3030 11 7 8.2741 3.4800 -0.4345 12 14 7.4546 4.8643 -2.6911 13 1 6.2266 4.8334 -3.5254 14 1 7.6330 6.2242 -2.1221 15 1 8.6310 4.5204 -3.5297 16 6 6.1958 2.8560 1.2672 17 6 6.6903 1.4725 1.6026 18 6 5.9617 0.6540 2.4450 19 7 6.3854 -0.5596 2.7388 20 6 7.5165 -1.0352 2.2555 21 6 8.3006 -0.2725 1.4112 22 6 9.5915 -0.8239 0.8629 23 6 7.8846 1.0069 1.0746 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.9557 0.7808 -0.8908 28 1 3.9564 0.7805 0.8891 29 1 3.6108 3.2355 0.8907 30 1 3.6101 3.2367 -0.8893 31 1 9.0778 4.0170 -0.5155 32 1 7.0449 3.5334 1.1764 33 1 5.5340 3.2072 2.0589 34 1 5.0323 1.0108 2.8636 35 1 7.8335 -2.0325 2.5224 36 1 10.4085 -0.5788 1.5415 37 1 9.5120 -1.9067 0.7662 38 1 9.7876 -0.3851 -0.1154 39 1 8.4767 1.6257 0.4168 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879474504.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:36 Heat of formation + Delta-G solvation = -29.869147 kcal Electronic energy + Delta-G solvation = -21966.486490 eV Core-core repulsion = 18682.147014 eV Total energy + Delta-G solvation = -3284.339476 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.13408 -39.39139 -36.55383 -35.84930 -32.89858 -32.39872 -31.75526 -29.84189 -27.49522 -26.65714 -25.85536 -24.40708 -22.38893 -21.44019 -20.26224 -19.91640 -17.38138 -16.92393 -16.34202 -16.22747 -15.93826 -15.67538 -14.66035 -14.20646 -13.93995 -13.69457 -13.53194 -13.18429 -12.97594 -12.65302 -12.31860 -12.22918 -12.11584 -12.03729 -11.94792 -11.77783 -11.43101 -11.00938 -10.77651 -10.64241 -10.55662 -10.28730 -10.17996 -10.09340 -10.02018 -8.67185 -8.60408 -8.25152 -7.91123 -7.04666 -6.47095 -3.32903 1.90575 2.27234 2.54710 3.02299 3.27524 3.45281 3.52646 4.33283 4.60658 4.77379 5.13918 5.14359 5.16799 5.22566 5.49429 5.52218 5.57742 5.60749 5.68069 5.79061 5.84849 6.00701 6.06387 6.18252 6.20645 6.27165 6.35089 6.52716 6.63751 6.65410 6.73242 6.87440 7.22671 7.40076 7.51307 7.63425 7.85205 8.05786 8.22273 8.72504 8.94671 9.56613 10.19851 10.63401 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.011109 B = 0.007562 C = 0.004912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.789370 B = 3701.856663 C = 5698.721569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.366 6.366 3 C 0.464 3.536 4 O -0.514 6.514 5 C -0.140 4.140 6 C 0.171 3.829 7 N -0.582 5.582 8 C -0.312 4.312 9 H 0.076 0.924 10 C 0.076 3.924 11 N -0.831 5.831 12 Si 0.830 3.170 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.293 1.293 16 C 0.168 3.832 17 C -0.114 4.114 18 C 0.068 3.932 19 N -0.499 5.499 20 C 0.066 3.934 21 C -0.158 4.158 22 C -0.101 4.101 23 C -0.046 4.046 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.095 0.905 27 H 0.100 0.900 28 H 0.097 0.903 29 H 0.049 0.951 30 H 0.064 0.936 31 H 0.264 0.736 32 H 0.105 0.895 33 H 0.033 0.967 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.062 0.938 37 H 0.057 0.943 38 H 0.066 0.934 39 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.055 -6.211 3.103 8.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.282 6.282 3 C 0.307 3.693 4 O -0.402 6.402 5 C -0.181 4.181 6 C 0.043 3.957 7 N -0.301 5.301 8 C -0.438 4.438 9 H 0.094 0.906 10 C -0.129 4.129 11 N -0.467 5.467 12 Si 0.654 3.346 13 H -0.198 1.198 14 H -0.210 1.210 15 H -0.220 1.220 16 C 0.043 3.957 17 C -0.119 4.119 18 C -0.089 4.089 19 N -0.207 5.207 20 C -0.091 4.091 21 C -0.160 4.160 22 C -0.159 4.159 23 C -0.073 4.073 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.114 0.886 27 H 0.118 0.882 28 H 0.115 0.885 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.122 0.878 33 H 0.051 0.949 34 H 0.153 0.847 35 H 0.153 0.847 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -4.615 -6.350 3.711 8.683 hybrid contribution 0.375 0.887 -1.327 1.639 sum -4.241 -5.463 2.384 7.315 Atomic orbital electron populations 1.23170 0.77461 1.03103 1.02217 1.86588 1.22709 1.34579 1.84371 1.24425 0.92700 0.80808 0.71324 1.90618 1.67481 1.36318 1.45812 1.22579 0.84854 1.05262 1.05404 1.20609 0.84103 0.89881 1.01095 1.44178 0.99166 1.84770 1.01983 1.18707 1.10574 1.25683 0.88800 0.90612 1.25276 0.94941 0.97131 0.95558 1.70056 1.03392 1.34361 1.38910 0.87422 0.77819 0.84940 0.84377 1.19849 1.20988 1.22005 1.20716 0.97057 0.91128 0.86823 1.21920 0.94438 1.00833 0.94671 1.22482 0.99226 0.90020 0.97185 1.67485 1.14699 1.14655 1.23875 1.22268 0.91432 0.99233 0.96215 1.20996 0.98375 0.96483 1.00119 1.20609 0.94229 1.00049 1.01000 1.22484 0.95570 0.93594 0.95606 0.92208 0.92205 0.88637 0.88181 0.88482 0.93249 0.91733 0.92493 0.87778 0.94864 0.84728 0.84666 0.91928 0.92380 0.91455 0.80565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 101.05 1.07 1.46 16 2 O -0.37 -5.66 10.57 -39.25 -0.41 -6.08 16 3 C 0.46 7.99 7.96 36.00 0.29 8.27 16 4 O -0.51 -9.77 15.73 -18.75 -0.29 -10.07 16 5 C -0.14 -2.50 6.13 -27.88 -0.17 -2.67 16 6 C 0.17 3.36 4.99 -4.04 -0.02 3.34 16 7 N -0.58 -12.89 2.52 -174.61 -0.44 -13.33 16 8 C -0.31 -7.64 9.27 -15.06 -0.14 -7.78 16 9 H 0.08 1.92 8.06 -52.48 -0.42 1.50 16 10 C 0.08 1.84 5.07 -17.43 -0.09 1.75 16 11 N -0.83 -19.84 8.33 55.49 0.46 -19.38 16 12 Si 0.83 18.91 29.69 -169.99 -5.05 13.86 16 13 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 16 C 0.17 3.57 5.46 -5.19 -0.03 3.54 16 17 C -0.11 -2.34 5.41 -104.48 -0.57 -2.90 16 18 C 0.07 1.31 9.39 -17.54 -0.16 1.14 16 19 N -0.50 -9.65 10.36 -13.26 -0.14 -9.79 16 20 C 0.07 1.18 10.86 -17.55 -0.19 0.99 16 21 C -0.16 -2.87 5.90 -104.48 -0.62 -3.48 16 22 C -0.10 -1.48 10.04 36.01 0.36 -1.12 16 23 C -0.05 -0.96 9.40 -39.28 -0.37 -1.33 16 24 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 25 H 0.06 0.67 8.13 -51.94 -0.42 0.25 16 26 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 28 H 0.10 1.74 6.39 -51.93 -0.33 1.41 16 29 H 0.05 0.93 7.81 -51.93 -0.41 0.53 16 30 H 0.06 1.33 8.00 -51.93 -0.42 0.91 16 31 H 0.26 6.08 8.31 -40.82 -0.34 5.74 16 32 H 0.10 2.44 5.49 -51.93 -0.28 2.15 16 33 H 0.03 0.64 7.73 -51.93 -0.40 0.24 16 34 H 0.14 2.35 7.87 -52.49 -0.41 1.94 16 35 H 0.14 2.01 8.06 -52.49 -0.42 1.59 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.73 8.09 -51.93 -0.42 0.31 16 38 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 39 H 0.18 3.99 5.15 -52.49 -0.27 3.72 16 LS Contribution 328.69 15.07 4.95 4.95 Total: -1.00 -26.87 328.69 -7.01 -33.89 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -5.46 Total: 4.73 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -0.64 Total: 1.21 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: -0.12 Total: -42.50 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -0.71 Total: -16.15 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.05 Total: 13.86 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -26.87 -7.01 -33.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879474504.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.018 kcal (2) G-P(sol) polarization free energy of solvation -26.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds