Wall clock time and date at job start Tue Mar 31 2020 00:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34228 * 117.00077 * 2 1 4 4 O 1.20826 * 119.99817 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00033 * 180.02562 * 3 2 1 6 6 C 1.53000 * 109.47314 * 180.02562 * 5 3 2 7 7 N 1.46496 * 109.47053 * 180.02562 * 6 5 3 8 8 C 1.36932 * 120.00343 * 90.00250 * 7 6 5 9 9 H 1.08005 * 119.99824 * 324.20658 * 8 7 6 10 10 C 1.38805 * 120.00552 * 143.93235 * 8 7 6 11 11 N 1.31618 * 120.00171 * 52.73891 * 10 8 7 12 12 Si 1.86803 * 120.00384 * 232.74436 * 10 8 7 13 13 H 1.48499 * 109.47081 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47259 * 119.99818 * 12 10 8 15 15 H 1.48498 * 109.47117 * 239.99835 * 12 10 8 16 16 C 1.46505 * 120.00135 * 269.99853 * 7 6 5 17 17 C 1.50699 * 109.47171 * 97.94361 * 16 7 6 18 18 C 1.38223 * 120.41797 * 264.34705 * 17 16 7 19 19 N 1.31862 * 120.75904 * 179.73329 * 18 17 16 20 20 C 1.31877 * 121.72605 * 0.57906 * 19 18 17 21 21 C 1.38182 * 120.76670 * 359.68271 * 20 19 18 22 22 C 1.50701 * 120.42184 * 180.02562 * 21 20 19 23 23 C 1.38633 * 120.41566 * 84.62648 * 17 16 7 24 24 H 1.09001 * 109.46750 * 299.99694 * 1 2 3 25 25 H 1.08989 * 109.46992 * 59.99638 * 1 2 3 26 26 H 1.09000 * 109.46915 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47123 * 59.99667 * 5 3 2 28 28 H 1.09002 * 109.47196 * 300.00143 * 5 3 2 29 29 H 1.08999 * 109.46717 * 59.99835 * 6 5 3 30 30 H 1.09002 * 109.46996 * 300.00131 * 6 5 3 31 31 H 0.96996 * 120.00491 * 179.97438 * 11 10 8 32 32 H 1.09003 * 109.47161 * 217.95065 * 16 7 6 33 33 H 1.09006 * 109.46917 * 337.94145 * 16 7 6 34 34 H 1.07997 * 119.62179 * 0.02562 * 18 17 16 35 35 H 1.07998 * 119.61895 * 179.70839 * 20 19 18 36 36 H 1.09005 * 109.46994 * 269.98421 * 22 21 20 37 37 H 1.09000 * 109.46830 * 29.97407 * 22 21 20 38 38 H 1.08997 * 109.47431 * 149.98031 * 22 21 20 39 39 H 1.07994 * 120.78964 * 359.95912 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0002 2.7420 0.0002 7 7 5.4632 2.8186 -0.0010 8 6 6.1459 2.8554 -1.1874 9 1 5.7873 2.2895 -2.0346 10 6 7.2958 3.6243 -1.3030 11 7 8.2741 3.4800 -0.4345 12 14 7.4546 4.8643 -2.6911 13 1 6.2266 4.8334 -3.5254 14 1 7.6330 6.2242 -2.1221 15 1 8.6310 4.5204 -3.5297 16 6 6.1958 2.8560 1.2672 17 6 6.6903 1.4725 1.6026 18 6 5.9617 0.6540 2.4450 19 7 6.3854 -0.5596 2.7388 20 6 7.5165 -1.0352 2.2555 21 6 8.3006 -0.2725 1.4112 22 6 9.5915 -0.8239 0.8629 23 6 7.8846 1.0069 1.0746 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.9557 0.7808 -0.8908 28 1 3.9564 0.7805 0.8891 29 1 3.6108 3.2355 0.8907 30 1 3.6101 3.2367 -0.8893 31 1 9.0778 4.0170 -0.5155 32 1 7.0449 3.5334 1.1764 33 1 5.5340 3.2072 2.0589 34 1 5.0323 1.0108 2.8636 35 1 7.8335 -2.0325 2.5224 36 1 10.4085 -0.5788 1.5415 37 1 9.5120 -1.9067 0.7662 38 1 9.7876 -0.3851 -0.1154 39 1 8.4767 1.6257 0.4168 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879474504.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:35 Heat of formation + Delta-G solvation = -42.986103 kcal Electronic energy + Delta-G solvation = -21967.055284 eV Core-core repulsion = 18682.147014 eV Total energy + Delta-G solvation = -3284.908270 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.46988 -40.86276 -38.02850 -37.33479 -34.39420 -33.99940 -33.34256 -31.39957 -28.59471 -27.98353 -27.53721 -25.96346 -23.89473 -22.94635 -21.69634 -21.45602 -18.89808 -18.51619 -17.68938 -17.53462 -17.36056 -17.15828 -16.44180 -15.77205 -15.45582 -15.26739 -14.87758 -14.57734 -14.36886 -14.07022 -13.89221 -13.68321 -13.52292 -13.43535 -13.19967 -13.10895 -12.87459 -12.68419 -12.52979 -12.25242 -11.98791 -11.83826 -11.77560 -11.68829 -11.53193 -10.21926 -10.16891 -9.96869 -9.43317 -8.78051 -8.31950 -5.18325 0.45311 0.74673 1.17626 1.41605 1.57659 1.64877 1.81071 2.49466 2.87834 3.12000 3.75907 3.76804 4.02765 4.15861 4.18743 4.22825 4.31838 4.34207 4.37646 4.39150 4.61182 4.66097 4.68530 4.72151 4.81158 4.90062 4.99074 5.04563 5.21251 5.24904 5.33633 5.40144 5.59774 5.73618 5.89182 5.99046 6.17509 6.41945 6.74055 7.13555 7.25755 7.77848 8.39024 8.77410 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.011109 B = 0.007562 C = 0.004912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.789370 B = 3701.856663 C = 5698.721569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.370 6.370 3 C 0.472 3.528 4 O -0.535 6.535 5 C -0.127 4.127 6 C 0.174 3.826 7 N -0.591 5.591 8 C -0.325 4.325 9 H 0.060 0.940 10 C 0.051 3.949 11 N -0.833 5.833 12 Si 0.874 3.126 13 H -0.283 1.283 14 H -0.289 1.289 15 H -0.295 1.295 16 C 0.173 3.827 17 C -0.125 4.125 18 C 0.067 3.933 19 N -0.508 5.508 20 C 0.067 3.933 21 C -0.157 4.157 22 C -0.098 4.098 23 C -0.071 4.071 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.131 0.869 27 H 0.092 0.908 28 H 0.099 0.901 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.266 0.734 32 H 0.080 0.920 33 H 0.049 0.951 34 H 0.150 0.850 35 H 0.171 0.829 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.056 0.944 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.419 -7.858 3.856 9.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.287 6.287 3 C 0.317 3.683 4 O -0.425 6.425 5 C -0.167 4.167 6 C 0.047 3.953 7 N -0.312 5.312 8 C -0.451 4.451 9 H 0.078 0.922 10 C -0.153 4.153 11 N -0.469 5.469 12 Si 0.700 3.300 13 H -0.209 1.209 14 H -0.216 1.216 15 H -0.223 1.223 16 C 0.048 3.952 17 C -0.129 4.129 18 C -0.090 4.090 19 N -0.217 5.217 20 C -0.091 4.091 21 C -0.159 4.159 22 C -0.155 4.155 23 C -0.097 4.097 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.149 0.851 27 H 0.110 0.890 28 H 0.117 0.883 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.067 0.933 34 H 0.167 0.833 35 H 0.188 0.812 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.075 0.925 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -4.986 -8.013 4.467 10.441 hybrid contribution 0.464 1.325 -1.540 2.084 sum -4.521 -6.688 2.927 8.587 Atomic orbital electron populations 1.23547 0.74937 1.05608 1.02558 1.86550 1.25121 1.33221 1.83788 1.24086 0.92293 0.81082 0.70881 1.90612 1.67837 1.37097 1.46928 1.22245 0.85777 1.03621 1.05091 1.20564 0.82898 0.91087 1.00770 1.44179 0.99959 1.85404 1.01642 1.18631 1.10793 1.26193 0.89456 0.92222 1.25557 0.95080 0.97790 0.96891 1.70145 1.03261 1.34189 1.39303 0.86768 0.76925 0.83472 0.82842 1.20894 1.21552 1.22294 1.20512 0.96442 0.91470 0.86790 1.21820 0.94938 1.00524 0.95645 1.22614 0.99570 0.89966 0.96853 1.67557 1.15443 1.14517 1.24156 1.22825 0.90615 1.00410 0.95226 1.21321 0.99624 0.95397 0.99577 1.20652 0.92861 1.01467 1.00547 1.22430 0.96021 0.94924 0.96338 0.91790 0.92018 0.85112 0.88987 0.88271 0.92403 0.93137 0.92376 0.90240 0.93306 0.83269 0.81228 0.90277 0.89710 0.92492 0.82690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.56 113.37 1.20 1.74 16 2 O -0.37 -10.82 10.57 -51.40 -0.54 -11.36 16 3 C 0.47 15.82 7.96 71.24 0.57 16.39 16 4 O -0.53 -19.92 15.73 21.97 0.35 -19.57 16 5 C -0.13 -4.47 6.13 29.85 0.18 -4.29 16 6 C 0.17 6.87 4.99 86.38 0.43 7.30 16 7 N -0.59 -26.54 2.52 -706.33 -1.78 -28.32 16 8 C -0.32 -16.22 9.27 84.03 0.78 -15.45 16 9 H 0.06 3.13 8.06 -2.91 -0.02 3.10 16 10 C 0.05 2.53 5.07 84.86 0.43 2.97 16 11 N -0.83 -40.42 8.33 21.65 0.18 -40.24 16 12 Si 0.87 39.63 29.69 68.60 2.04 41.66 16 13 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 14 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 15 H -0.30 -13.43 7.11 99.48 0.71 -12.73 16 16 C 0.17 7.40 5.46 85.63 0.47 7.87 16 17 C -0.12 -5.09 5.41 -19.77 -0.11 -5.19 16 18 C 0.07 2.48 9.39 84.68 0.80 3.27 16 19 N -0.51 -18.57 10.36 -195.85 -2.03 -20.59 16 20 C 0.07 2.20 10.86 84.67 0.92 3.12 16 21 C -0.16 -5.45 5.90 -19.77 -0.12 -5.57 16 22 C -0.10 -2.63 10.04 71.24 0.72 -1.92 16 23 C -0.07 -2.93 9.40 22.47 0.21 -2.72 16 24 H 0.06 1.28 8.13 -2.39 -0.02 1.26 16 25 H 0.06 1.26 8.13 -2.39 -0.02 1.24 16 26 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 28 H 0.10 3.47 6.39 -2.39 -0.02 3.46 16 29 H 0.06 2.17 7.81 -2.39 -0.02 2.15 16 30 H 0.05 2.11 8.00 -2.39 -0.02 2.09 16 31 H 0.27 12.38 8.31 -92.71 -0.77 11.61 16 32 H 0.08 3.80 5.49 -2.39 -0.01 3.78 16 33 H 0.05 1.87 7.73 -2.38 -0.02 1.85 16 34 H 0.15 4.98 7.87 -2.91 -0.02 4.96 16 35 H 0.17 4.34 8.06 -2.91 -0.02 4.32 16 36 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 37 H 0.08 1.82 8.09 -2.39 -0.02 1.80 16 38 H 0.06 1.65 8.10 -2.39 -0.02 1.63 16 39 H 0.16 7.14 5.15 -2.91 -0.02 7.12 16 Total: -1.00 -57.06 328.69 5.73 -51.34 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: 1.04 Total: 19.56 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: 6.47 Total: 7.52 kcal Atomic # 7 Polarization: -85.52 SS G_CDS: -3.63 Total: -89.15 kcal Atomic # 8 Polarization: -30.73 SS G_CDS: -0.20 Total: -30.93 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 2.04 Total: 41.66 kcal Total: -57.06 5.73 -51.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879474504.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.351 kcal (2) G-P(sol) polarization free energy of solvation -57.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds