Wall clock time and date at job start Mon Mar 30 2020 23:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36007 * 116.99791 * 2 1 4 4 C 1.38658 * 119.99942 * 359.97438 * 3 2 1 5 5 C 1.38373 * 120.31886 * 179.97438 * 4 3 2 6 6 C 1.50699 * 119.84556 * 180.02562 * 5 4 3 7 7 C 1.37936 * 120.30945 * 0.02782 * 5 4 3 8 8 C 1.39702 * 119.98697 * 359.97438 * 7 5 4 9 9 C 1.47453 * 120.15747 * 180.02562 * 8 7 5 10 10 N 1.29746 * 119.99997 * 179.97438 * 9 8 7 11 11 N 1.40105 * 120.00041 * 180.02562 * 10 9 8 12 12 C 1.46497 * 120.00129 * 180.02562 * 11 10 9 13 13 H 1.09007 * 109.47078 * 29.99710 * 12 11 10 14 14 C 1.53000 * 109.47021 * 270.00290 * 12 11 10 15 15 C 1.50694 * 109.47115 * 150.00071 * 12 11 10 16 16 H 1.08000 * 120.00563 * 359.97438 * 15 12 11 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 12 11 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.47353 * 269.99586 * 19 17 15 21 21 H 1.48501 * 109.47293 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46680 * 149.99835 * 19 17 15 23 23 C 1.38912 * 119.99395 * 180.32371 * 3 2 1 24 24 O 1.35938 * 120.15687 * 359.97438 * 23 3 2 25 25 H 1.08997 * 109.47031 * 60.00217 * 1 2 3 26 26 H 1.09005 * 109.46868 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46845 * 300.00291 * 1 2 3 28 28 H 1.08004 * 119.84327 * 0.02562 * 4 3 2 29 29 H 1.08997 * 109.47594 * 269.98042 * 6 5 4 30 30 H 1.09001 * 109.47438 * 29.98754 * 6 5 4 31 31 H 1.09010 * 109.46757 * 149.98135 * 6 5 4 32 32 H 1.08004 * 120.00824 * 180.02562 * 7 5 4 33 33 H 1.08006 * 119.99703 * 0.02562 * 9 8 7 34 34 H 0.96998 * 119.99525 * 0.02562 * 11 10 9 35 35 H 1.08995 * 109.47131 * 179.97438 * 14 12 11 36 36 H 1.09002 * 109.47106 * 299.99878 * 14 12 11 37 37 H 1.08998 * 109.47089 * 59.99825 * 14 12 11 38 38 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 39 39 H 0.96704 * 113.99599 * 270.27414 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2912 2.3747 -0.0005 5 6 1.9125 3.6111 0.0000 6 6 1.0812 4.8681 0.0000 7 6 3.2890 3.6985 0.0005 8 6 4.0625 2.5351 0.0010 9 6 5.5343 2.6241 0.0021 10 7 6.2497 1.5417 0.0030 11 7 7.6482 1.6262 0.0046 12 6 8.4560 0.4041 0.0052 13 1 7.9143 -0.3897 -0.5095 14 6 8.7355 -0.0218 1.4478 15 6 9.7602 0.6637 -0.7037 16 1 9.9667 1.6411 -1.1140 17 6 10.6896 -0.3471 -0.8294 18 7 10.4380 -1.5375 -0.3302 19 14 12.3060 -0.0255 -1.7087 20 1 12.1512 -0.3257 -3.1547 21 1 12.6880 1.3993 -1.5370 22 1 13.3639 -0.8944 -1.1332 23 6 3.4336 1.2845 -0.0068 24 8 4.1770 0.1464 -0.0129 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.2128 2.3152 -0.0005 29 1 0.8814 5.1717 -1.0276 30 1 0.1381 4.6802 0.5132 31 1 1.6229 5.6619 0.5146 32 1 3.7689 4.6661 0.0013 33 1 6.0169 3.5904 0.0029 34 1 8.0815 2.4940 0.0054 35 1 9.3361 -0.9314 1.4483 36 1 9.2770 0.7718 1.9626 37 1 7.7921 -0.2096 1.9605 38 1 11.0917 -2.2487 -0.4190 39 1 4.3930 -0.1870 0.8687 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884441588.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:26 Heat of formation + Delta-G solvation = -13.582147 kcal Electronic energy + Delta-G solvation = -20989.476768 eV Core-core repulsion = 17705.843549 eV Total energy + Delta-G solvation = -3283.633219 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.27541 -37.91434 -36.53734 -36.18342 -34.02812 -32.07278 -30.99527 -29.99890 -27.81164 -27.22344 -25.79347 -25.21122 -23.05393 -21.78025 -20.35243 -19.76856 -18.07950 -17.20533 -17.06478 -16.35306 -15.85573 -15.25289 -15.02416 -14.98121 -14.22835 -13.92847 -13.81396 -13.52224 -13.25160 -12.65617 -12.63661 -12.44975 -12.12973 -11.95542 -11.73412 -11.51470 -11.22601 -11.04204 -11.00896 -10.77698 -10.46678 -10.31077 -10.22261 -10.16353 -9.34070 -9.02032 -8.69100 -8.46165 -7.93607 -6.79198 -6.12378 -4.20586 1.11841 1.45814 3.01586 3.25293 3.25707 3.31886 3.34068 3.79249 3.94381 4.37414 4.54549 4.72321 4.97825 4.99838 5.04150 5.16474 5.20214 5.34188 5.37165 5.40743 5.48053 5.59672 5.72010 6.06002 6.07199 6.16889 6.45882 6.54948 6.74436 6.82636 6.98224 6.99417 7.15886 7.34751 7.59307 7.80117 7.86325 8.15935 8.21868 8.30618 8.86596 9.33295 9.46043 10.93539 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027768 B = 0.003492 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.116580 B = 8016.490908 C = 8678.762215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.307 6.307 3 C 0.103 3.897 4 C -0.208 4.208 5 C -0.060 4.060 6 C -0.110 4.110 7 C -0.138 4.138 8 C 0.010 3.990 9 C -0.030 4.030 10 N -0.159 5.159 11 N -0.620 5.620 12 C 0.296 3.704 13 H 0.045 0.955 14 C -0.149 4.149 15 C -0.531 4.531 16 H 0.059 0.941 17 C 0.067 3.933 18 N -0.885 5.885 19 Si 0.903 3.097 20 H -0.279 1.279 21 H -0.274 1.274 22 H -0.285 1.285 23 C 0.087 3.913 24 O -0.460 6.460 25 H 0.053 0.947 26 H 0.097 0.903 27 H 0.052 0.948 28 H 0.126 0.874 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.127 0.873 33 H 0.104 0.896 34 H 0.367 0.633 35 H 0.090 0.910 36 H 0.025 0.975 37 H 0.012 0.988 38 H 0.264 0.736 39 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.202 8.786 2.953 21.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.220 6.220 3 C 0.057 3.943 4 C -0.228 4.228 5 C -0.060 4.060 6 C -0.167 4.167 7 C -0.159 4.159 8 C 0.007 3.993 9 C -0.237 4.237 10 N 0.026 4.974 11 N -0.356 5.356 12 C 0.194 3.806 13 H 0.063 0.937 14 C -0.208 4.208 15 C -0.571 4.571 16 H 0.078 0.922 17 C -0.136 4.136 18 N -0.523 5.523 19 Si 0.730 3.270 20 H -0.205 1.205 21 H -0.199 1.199 22 H -0.210 1.210 23 C 0.038 3.962 24 O -0.268 6.268 25 H 0.071 0.929 26 H 0.116 0.884 27 H 0.071 0.929 28 H 0.144 0.856 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.145 0.855 33 H 0.121 0.879 34 H 0.203 0.797 35 H 0.109 0.891 36 H 0.044 0.956 37 H 0.031 0.969 38 H 0.074 0.926 39 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -18.923 7.259 2.365 20.405 hybrid contribution 1.060 1.409 0.024 1.763 sum -17.863 8.668 2.390 19.998 Atomic orbital electron populations 1.23027 0.79084 1.03673 1.01003 1.86182 1.20687 1.26395 1.88781 1.19384 0.91662 0.84626 0.98637 1.20908 0.99457 0.91409 1.11056 1.19461 0.93586 0.94349 0.98621 1.20756 0.99002 0.94703 1.02259 1.20801 0.92489 0.97343 1.05217 1.18612 0.91319 0.91612 0.97728 1.23295 0.91589 0.94556 1.14231 1.74224 0.94176 1.27446 1.01529 1.49248 0.97221 1.09658 1.79453 1.18567 0.87936 0.81117 0.93014 0.93701 1.22194 0.98473 1.02501 0.97667 1.21236 1.01019 0.97927 1.36885 0.92241 1.24858 0.98535 0.94838 0.95390 1.69891 1.35696 1.02044 1.44651 0.86426 0.82631 0.78177 0.79736 1.20516 1.19903 1.21027 1.17834 0.85777 0.86922 1.05634 1.84939 1.71244 1.38057 1.32578 0.92877 0.88447 0.92938 0.85643 0.91186 0.91822 0.91390 0.85527 0.87912 0.79703 0.89129 0.95600 0.96857 0.92558 0.76173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.31 -4.30 10.28 -34.40 -0.35 -4.65 16 3 C 0.10 1.50 6.69 -39.18 -0.26 1.24 16 4 C -0.21 -2.49 8.68 -39.38 -0.34 -2.83 16 5 C -0.06 -0.68 5.87 -104.68 -0.61 -1.30 16 6 C -0.11 -0.87 10.00 36.01 0.36 -0.51 16 7 C -0.14 -1.77 9.43 -39.15 -0.37 -2.14 16 8 C 0.01 0.16 5.88 -104.94 -0.62 -0.45 16 9 C -0.03 -0.54 10.75 -14.68 -0.16 -0.69 16 10 N -0.16 -3.33 9.34 32.15 0.30 -3.03 16 11 N -0.62 -13.91 6.10 -5.88 -0.04 -13.95 16 12 C 0.30 7.62 3.23 -69.09 -0.22 7.40 16 13 H 0.05 1.30 8.14 -51.92 -0.42 0.88 16 14 C -0.15 -3.67 9.29 37.16 0.35 -3.32 16 15 C -0.53 -14.45 8.74 -34.44 -0.30 -14.75 16 16 H 0.06 1.58 7.79 -52.49 -0.41 1.17 16 17 C 0.07 1.82 5.30 -17.82 -0.09 1.72 16 18 N -0.89 -24.90 11.32 55.43 0.63 -24.27 16 19 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 23 C 0.09 1.46 6.73 -38.68 -0.26 1.20 16 24 O -0.46 -8.51 11.16 -34.18 -0.38 -8.89 16 25 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 26 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.38 7.66 -51.93 -0.40 -0.01 16 28 H 0.13 1.16 6.28 -52.48 -0.33 0.83 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.42 8.08 -51.93 -0.42 0.00 16 31 H 0.07 0.47 8.08 -51.92 -0.42 0.05 16 32 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 33 H 0.10 1.60 8.02 -52.48 -0.42 1.18 16 34 H 0.37 7.62 8.58 -182.60 -1.57 6.06 16 35 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 36 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 39 H 0.38 6.03 9.06 45.56 0.41 6.44 16 LS Contribution 333.82 15.07 5.03 5.03 Total: -1.00 -31.05 333.82 -7.31 -38.36 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -5.93 Total: 8.63 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: -1.54 Total: -13.20 kcal Atomic # 7 Polarization: -42.14 SS G_CDS: 0.89 Total: -41.25 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: -0.74 Total: -13.55 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.05 -7.31 -38.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884441588.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.781 kcal (2) G-P(sol) polarization free energy of solvation -31.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds