Wall clock time and date at job start Mon Mar 30 2020 23:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36007 * 116.99791 * 2 1 4 4 C 1.38658 * 119.99942 * 359.97438 * 3 2 1 5 5 C 1.38373 * 120.31886 * 179.97438 * 4 3 2 6 6 C 1.50699 * 119.84556 * 180.02562 * 5 4 3 7 7 C 1.37936 * 120.30945 * 0.02782 * 5 4 3 8 8 C 1.39702 * 119.98697 * 359.97438 * 7 5 4 9 9 C 1.47453 * 120.15747 * 180.02562 * 8 7 5 10 10 N 1.29746 * 119.99997 * 179.97438 * 9 8 7 11 11 N 1.40105 * 120.00041 * 180.02562 * 10 9 8 12 12 C 1.46497 * 120.00129 * 180.02562 * 11 10 9 13 13 H 1.09007 * 109.47078 * 29.99710 * 12 11 10 14 14 C 1.53000 * 109.47021 * 270.00290 * 12 11 10 15 15 C 1.50694 * 109.47115 * 150.00071 * 12 11 10 16 16 H 1.08000 * 120.00563 * 359.97438 * 15 12 11 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 12 11 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.47353 * 269.99586 * 19 17 15 21 21 H 1.48501 * 109.47293 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46680 * 149.99835 * 19 17 15 23 23 C 1.38912 * 119.99395 * 180.32371 * 3 2 1 24 24 O 1.35938 * 120.15687 * 359.97438 * 23 3 2 25 25 H 1.08997 * 109.47031 * 60.00217 * 1 2 3 26 26 H 1.09005 * 109.46868 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46845 * 300.00291 * 1 2 3 28 28 H 1.08004 * 119.84327 * 0.02562 * 4 3 2 29 29 H 1.08997 * 109.47594 * 269.98042 * 6 5 4 30 30 H 1.09001 * 109.47438 * 29.98754 * 6 5 4 31 31 H 1.09010 * 109.46757 * 149.98135 * 6 5 4 32 32 H 1.08004 * 120.00824 * 180.02562 * 7 5 4 33 33 H 1.08006 * 119.99703 * 0.02562 * 9 8 7 34 34 H 0.96998 * 119.99525 * 0.02562 * 11 10 9 35 35 H 1.08995 * 109.47131 * 179.97438 * 14 12 11 36 36 H 1.09002 * 109.47106 * 299.99878 * 14 12 11 37 37 H 1.08998 * 109.47089 * 59.99825 * 14 12 11 38 38 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 39 39 H 0.96704 * 113.99599 * 270.27414 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2912 2.3747 -0.0005 5 6 1.9125 3.6111 0.0000 6 6 1.0812 4.8681 0.0000 7 6 3.2890 3.6985 0.0005 8 6 4.0625 2.5351 0.0010 9 6 5.5343 2.6241 0.0021 10 7 6.2497 1.5417 0.0030 11 7 7.6482 1.6262 0.0046 12 6 8.4560 0.4041 0.0052 13 1 7.9143 -0.3897 -0.5095 14 6 8.7355 -0.0218 1.4478 15 6 9.7602 0.6637 -0.7037 16 1 9.9667 1.6411 -1.1140 17 6 10.6896 -0.3471 -0.8294 18 7 10.4380 -1.5375 -0.3302 19 14 12.3060 -0.0255 -1.7087 20 1 12.1512 -0.3257 -3.1547 21 1 12.6880 1.3993 -1.5370 22 1 13.3639 -0.8944 -1.1332 23 6 3.4336 1.2845 -0.0068 24 8 4.1770 0.1464 -0.0129 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.2128 2.3152 -0.0005 29 1 0.8814 5.1717 -1.0276 30 1 0.1381 4.6802 0.5132 31 1 1.6229 5.6619 0.5146 32 1 3.7689 4.6661 0.0013 33 1 6.0169 3.5904 0.0029 34 1 8.0815 2.4940 0.0054 35 1 9.3361 -0.9314 1.4483 36 1 9.2770 0.7718 1.9626 37 1 7.7921 -0.2096 1.9605 38 1 11.0917 -2.2487 -0.4190 39 1 4.3930 -0.1870 0.8687 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884441588.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:25 Heat of formation + Delta-G solvation = -34.748205 kcal Electronic energy + Delta-G solvation = -20990.394597 eV Core-core repulsion = 17705.843549 eV Total energy + Delta-G solvation = -3284.551048 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.32861 -39.01778 -37.87430 -37.62720 -35.82392 -33.61879 -32.28209 -31.27586 -28.83228 -28.55145 -27.30554 -26.71430 -24.39408 -22.80176 -22.22831 -21.08123 -19.35091 -18.70159 -18.20551 -17.86681 -16.95756 -16.82736 -16.56199 -16.04394 -15.74877 -14.98419 -14.81631 -14.69279 -14.46842 -14.33994 -14.17937 -13.49141 -13.40488 -13.08217 -12.88612 -12.86385 -12.73144 -12.56429 -12.43652 -12.24556 -12.11847 -12.06247 -11.62525 -11.57520 -11.11431 -10.68098 -10.58450 -9.86200 -8.98135 -8.40483 -8.17164 -6.35193 -0.03507 0.41499 1.42116 1.43033 1.53551 1.73249 2.17022 2.36262 2.47368 2.80718 3.10880 3.43022 3.83299 3.93685 4.21727 4.22675 4.38695 4.40290 4.42363 4.65791 4.73099 4.79143 4.82875 4.90223 4.95314 4.99837 5.09677 5.13263 5.23511 5.36271 5.41935 5.54654 5.64755 5.80281 5.82136 5.89712 6.18090 6.38519 6.41154 6.84259 6.98786 7.36227 7.79344 8.87210 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027768 B = 0.003492 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.116580 B = 8016.490908 C = 8678.762215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.336 6.336 3 C 0.091 3.909 4 C -0.195 4.195 5 C -0.055 4.055 6 C -0.109 4.109 7 C -0.129 4.129 8 C -0.022 4.022 9 C 0.007 3.993 10 N -0.209 5.209 11 N -0.639 5.639 12 C 0.308 3.692 13 H -0.002 1.002 14 C -0.134 4.134 15 C -0.550 4.550 16 H 0.061 0.939 17 C 0.018 3.982 18 N -0.914 5.914 19 Si 0.971 3.029 20 H -0.278 1.278 21 H -0.265 1.265 22 H -0.278 1.278 23 C 0.054 3.946 24 O -0.485 6.485 25 H 0.066 0.934 26 H 0.113 0.887 27 H 0.070 0.930 28 H 0.158 0.842 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.153 0.847 33 H 0.127 0.873 34 H 0.372 0.628 35 H 0.068 0.932 36 H 0.030 0.970 37 H 0.019 0.981 38 H 0.267 0.733 39 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.331 11.456 2.788 24.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.250 6.250 3 C 0.045 3.955 4 C -0.214 4.214 5 C -0.055 4.055 6 C -0.165 4.165 7 C -0.150 4.150 8 C -0.025 4.025 9 C -0.202 4.202 10 N -0.019 5.019 11 N -0.376 5.376 12 C 0.204 3.796 13 H 0.016 0.984 14 C -0.193 4.193 15 C -0.589 4.589 16 H 0.079 0.921 17 C -0.182 4.182 18 N -0.552 5.552 19 Si 0.796 3.204 20 H -0.203 1.203 21 H -0.189 1.189 22 H -0.204 1.204 23 C 0.006 3.994 24 O -0.294 6.294 25 H 0.085 0.915 26 H 0.131 0.869 27 H 0.089 0.911 28 H 0.176 0.824 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.170 0.830 33 H 0.144 0.856 34 H 0.209 0.791 35 H 0.087 0.913 36 H 0.050 0.950 37 H 0.038 0.962 38 H 0.076 0.924 39 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -21.078 9.940 2.205 23.408 hybrid contribution 1.327 0.693 0.082 1.499 sum -19.751 10.633 2.287 22.547 Atomic orbital electron populations 1.23365 0.76464 1.05391 1.02466 1.86146 1.23482 1.26569 1.88792 1.19488 0.91149 0.85893 0.98974 1.21335 1.00983 0.90573 1.08529 1.19951 0.93385 0.95774 0.96368 1.20852 0.99236 0.92907 1.03547 1.21144 0.93209 0.97156 1.03468 1.18763 0.90467 0.92687 1.00571 1.23929 0.92595 0.94884 1.08809 1.74301 0.93257 1.29039 1.05347 1.48692 0.97925 1.08405 1.82560 1.18102 0.87451 0.81372 0.92661 0.98380 1.21992 0.98359 1.01465 0.97504 1.21544 1.01839 0.98169 1.37338 0.92106 1.25732 1.01984 0.94522 0.95998 1.70025 1.36854 1.02845 1.45519 0.85363 0.78313 0.78459 0.78293 1.20343 1.18921 1.20362 1.18262 0.87016 0.86663 1.07451 1.84906 1.72045 1.39305 1.33193 0.91548 0.86894 0.91096 0.82420 0.89875 0.90016 0.90067 0.82957 0.85616 0.79116 0.91332 0.95045 0.96159 0.92397 0.75978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.38 16 2 O -0.34 -9.21 10.28 -79.63 -0.82 -10.03 16 3 C 0.09 2.57 6.69 22.53 0.15 2.72 16 4 C -0.19 -4.02 8.68 22.40 0.19 -3.82 16 5 C -0.05 -1.03 5.87 -19.90 -0.12 -1.15 16 6 C -0.11 -1.16 10.00 71.24 0.71 -0.44 16 7 C -0.13 -2.95 9.43 22.55 0.21 -2.73 16 8 C -0.02 -0.69 5.88 -20.07 -0.12 -0.80 16 9 C 0.01 0.23 10.75 87.43 0.94 1.17 16 10 N -0.21 -9.08 9.34 -52.19 -0.49 -9.57 16 11 N -0.64 -29.89 6.10 -172.53 -1.05 -30.94 16 12 C 0.31 16.72 3.23 44.24 0.14 16.86 16 13 H 0.00 -0.11 8.14 -2.38 -0.02 -0.13 16 14 C -0.13 -6.88 9.29 71.98 0.67 -6.21 16 15 C -0.55 -30.83 8.74 25.60 0.22 -30.61 16 16 H 0.06 3.30 7.79 -2.91 -0.02 3.28 16 17 C 0.02 0.99 5.30 84.66 0.45 1.44 16 18 N -0.91 -53.07 11.32 21.45 0.24 -52.83 16 19 Si 0.97 43.50 29.54 68.60 2.03 45.53 16 20 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 21 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 22 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 23 C 0.05 1.85 6.73 22.86 0.15 2.01 16 24 O -0.49 -19.19 11.16 -78.85 -0.88 -20.07 16 25 H 0.07 0.83 7.66 -2.39 -0.02 0.82 16 26 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16 27 H 0.07 0.82 7.66 -2.38 -0.02 0.80 16 28 H 0.16 2.18 6.28 -2.91 -0.02 2.16 16 29 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.08 0.63 8.08 -2.39 -0.02 0.61 16 31 H 0.08 0.70 8.08 -2.38 -0.02 0.68 16 32 H 0.15 2.63 8.06 -2.91 -0.02 2.60 16 33 H 0.13 3.74 8.02 -2.91 -0.02 3.71 16 34 H 0.37 15.90 8.58 -213.32 -1.83 14.07 16 35 H 0.07 3.81 6.07 -2.39 -0.01 3.79 16 36 H 0.03 1.51 8.14 -2.39 -0.02 1.50 16 37 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 39 H 0.38 13.43 9.06 -74.05 -0.67 12.76 16 Total: -1.00 -70.64 333.82 2.33 -68.31 By element: Atomic # 1 Polarization: 31.23 SS G_CDS: -1.43 Total: 29.81 kcal Atomic # 6 Polarization: -24.92 SS G_CDS: 4.73 Total: -20.20 kcal Atomic # 7 Polarization: -92.05 SS G_CDS: -1.30 Total: -93.35 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -1.70 Total: -30.10 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -70.64 2.33 -68.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884441588.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.559 kcal (2) G-P(sol) polarization free energy of solvation -70.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds