Wall clock time and date at job start Tue Mar 31 2020 00:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.32154 * 120.53491 * 2 1 4 4 C 1.31860 * 120.96883 * 179.97438 * 3 2 1 5 5 C 1.50701 * 118.94551 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.47138 * 119.99812 * 5 4 3 7 7 C 1.53001 * 109.47331 * 240.00154 * 5 4 3 8 8 N 1.31887 * 122.11235 * 0.27723 * 4 3 2 9 9 C 1.32127 * 120.96777 * 359.44519 * 8 4 3 10 10 C 1.39975 * 120.54262 * 179.97438 * 2 1 3 11 11 C 1.47707 * 120.94765 * 0.02562 * 10 2 1 12 12 O 1.21479 * 120.00101 * 6.08012 * 11 10 2 13 13 O 1.34707 * 120.00244 * 186.07516 * 11 10 2 14 14 C 1.45202 * 117.00021 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47203 * 180.02562 * 14 13 11 16 16 C 1.50701 * 109.47247 * 180.02562 * 15 14 13 17 17 H 1.07997 * 119.99795 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99817 * 179.97438 * 16 15 14 19 19 N 1.31510 * 120.00126 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99563 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47362 * 60.00437 * 20 18 16 22 22 H 1.48510 * 109.47024 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47178 * 299.99959 * 20 18 16 24 24 H 1.08999 * 109.46628 * 96.31549 * 1 2 3 25 25 H 1.09000 * 109.46526 * 216.31242 * 1 2 3 26 26 H 1.08994 * 109.47630 * 336.31424 * 1 2 3 27 27 H 1.08999 * 109.46877 * 0.02562 * 5 4 3 28 28 H 1.09001 * 109.47269 * 179.97438 * 6 5 4 29 29 H 1.08999 * 109.47017 * 60.00354 * 6 5 4 30 30 H 1.08992 * 109.47577 * 300.00291 * 6 5 4 31 31 H 1.09000 * 109.46716 * 59.99542 * 7 5 4 32 32 H 1.09001 * 109.47121 * 179.97438 * 7 5 4 33 33 H 1.09001 * 109.46757 * 300.00218 * 7 5 4 34 34 H 1.08001 * 120.54449 * 180.27728 * 9 8 4 35 35 H 1.09002 * 109.47556 * 300.00276 * 14 13 11 36 36 H 1.09003 * 109.47228 * 60.00460 * 14 13 11 37 37 H 1.09005 * 109.46967 * 299.99633 * 15 14 13 38 38 H 1.08995 * 109.47144 * 59.99727 * 15 14 13 39 39 H 0.96999 * 119.99774 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1785 1.1383 0.0000 4 6 3.4970 1.1483 0.0005 5 6 4.2164 2.4725 0.0011 6 6 5.0931 2.5761 1.2507 7 6 5.0941 2.5767 -1.2478 8 7 4.2066 0.0365 -0.0044 9 6 3.6174 -1.1461 0.0009 10 6 2.2184 -1.2055 0.0005 11 6 1.5134 -2.5035 0.0006 12 8 0.3042 -2.5380 -0.1113 13 8 2.2112 -3.6491 0.1245 14 6 1.4525 -4.8871 0.1170 15 6 2.4087 -6.0720 0.2678 16 6 1.6214 -7.3570 0.2594 17 1 0.5466 -7.3311 0.1572 18 6 2.2733 -8.5657 0.3823 19 7 3.5821 -8.5972 0.5072 20 14 1.2973 -10.1584 0.3725 21 1 0.5582 -10.2783 -0.9098 22 1 2.2254 -11.3086 0.5188 23 1 0.3327 -10.1548 1.5016 24 1 -0.3632 -0.1130 -1.0214 25 1 -0.3632 -0.8281 0.6086 26 1 -0.3634 0.9410 0.4128 27 1 3.4868 3.2823 0.0014 28 1 5.6138 3.5337 1.2509 29 1 5.8227 1.7663 1.2508 30 1 4.4679 2.5019 2.1404 31 1 4.4694 2.5028 -2.1380 32 1 5.6140 3.5347 -1.2476 33 1 5.8237 1.7669 -1.2477 34 1 4.2051 -2.0522 0.0014 35 1 0.7444 -4.8844 0.9457 36 1 0.9100 -4.9752 -0.8243 37 1 3.1171 -6.0750 -0.5606 38 1 2.9509 -5.9838 1.2092 39 1 4.0407 -9.4475 0.5940 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884845181.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:42:05 Heat of formation + Delta-G solvation = -61.786217 kcal Electronic energy + Delta-G solvation = -20846.545954 eV Core-core repulsion = 17560.822449 eV Total energy + Delta-G solvation = -3285.723504 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.55794 -39.78631 -36.57131 -35.82204 -34.41807 -33.39820 -32.11512 -30.37035 -28.84176 -27.44247 -25.81202 -24.80405 -23.49855 -21.93722 -20.86052 -20.45032 -18.35188 -17.48629 -16.53513 -16.33895 -16.23842 -15.85865 -15.25235 -14.57728 -14.55996 -14.26978 -13.69700 -13.46226 -13.21214 -13.12477 -12.88720 -12.59521 -12.38447 -12.36837 -12.09926 -11.50445 -11.44562 -11.31064 -11.22234 -11.11757 -10.81338 -10.74508 -10.69881 -10.14815 -9.79635 -9.67065 -9.60134 -9.46375 -9.36565 -8.48238 -6.14406 -4.19233 0.21149 0.85895 2.58894 2.90535 3.27538 3.31912 3.34886 3.51799 3.53559 3.81162 4.22617 4.35363 4.61553 4.66306 4.72916 4.82111 5.03318 5.22309 5.27228 5.37523 5.41754 5.48407 5.52802 5.57502 5.62129 5.69944 5.89598 5.94631 5.96311 6.00805 6.08987 6.20330 6.54951 6.68326 6.86298 7.48691 7.55799 7.79620 7.82798 8.02353 8.18424 8.85947 9.45475 10.97002 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.030614 B = 0.003155 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.405172 B = 8873.289252 C = 9583.383581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.239 3.761 3 N -0.527 5.527 4 C 0.349 3.651 5 C -0.029 4.029 6 C -0.142 4.142 7 C -0.141 4.141 8 N -0.524 5.524 9 C 0.214 3.786 10 C -0.238 4.238 11 C 0.512 3.488 12 O -0.504 6.504 13 O -0.351 6.351 14 C 0.077 3.923 15 C 0.025 3.975 16 C -0.529 4.529 17 H 0.059 0.941 18 C 0.062 3.938 19 N -0.890 5.890 20 Si 0.900 3.100 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.275 1.275 24 H 0.092 0.908 25 H 0.106 0.894 26 H 0.077 0.923 27 H 0.097 0.903 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.188 0.812 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.029 0.971 38 H 0.029 0.971 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.049 21.879 -0.941 21.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.093 3.907 3 N -0.241 5.241 4 C 0.083 3.917 5 C -0.049 4.049 6 C -0.200 4.200 7 C -0.199 4.199 8 N -0.238 5.238 9 C 0.047 3.953 10 C -0.243 4.243 11 C 0.356 3.644 12 O -0.394 6.394 13 O -0.267 6.267 14 C 0.005 3.995 15 C -0.012 4.012 16 C -0.567 4.567 17 H 0.077 0.923 18 C -0.141 4.141 19 N -0.528 5.528 20 Si 0.727 3.273 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.200 1.200 24 H 0.111 0.889 25 H 0.125 0.875 26 H 0.096 0.904 27 H 0.115 0.885 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.205 0.795 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.318 22.556 -0.955 22.615 hybrid contribution -1.021 -1.918 -0.030 2.173 sum 0.298 20.638 -0.984 20.663 Atomic orbital electron populations 1.21127 0.86472 1.04580 1.04860 1.22000 0.98110 0.86235 0.84329 1.68295 1.09532 1.29292 1.17023 1.23501 0.86525 0.94982 0.86720 1.20049 0.97069 0.90159 0.97660 1.21803 0.99613 1.02890 0.95656 1.21805 0.99608 1.02881 0.95654 1.68305 1.41055 0.98290 1.16128 1.23846 0.90935 0.96624 0.83869 1.20910 0.96505 0.93484 1.13440 1.20499 0.85597 0.84724 0.73605 1.90767 1.14796 1.87954 1.45934 1.86558 1.42654 1.15513 1.81976 1.23737 0.95755 0.78806 1.01240 1.19181 0.94577 0.88647 0.98840 1.20922 0.93636 0.90239 1.51876 0.92263 1.24976 0.94967 0.99345 0.94788 1.69956 1.07418 1.26461 1.48927 0.86526 0.79693 0.82260 0.78785 1.20043 1.21097 1.20047 0.88947 0.87535 0.90391 0.88466 0.91436 0.91148 0.92701 0.92737 0.91438 0.91138 0.79496 0.92020 0.92005 0.95271 0.95274 0.92590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.34 8.99 36.01 0.32 -1.01 16 2 C 0.24 3.26 6.87 -81.80 -0.56 2.70 16 3 N -0.53 -6.94 10.22 -6.66 -0.07 -7.01 16 4 C 0.35 4.29 6.34 -157.06 -1.00 3.30 16 5 C -0.03 -0.26 3.25 -91.77 -0.30 -0.56 16 6 C -0.14 -1.12 9.09 37.16 0.34 -0.78 16 7 C -0.14 -1.12 9.08 37.16 0.34 -0.78 16 8 N -0.52 -6.81 9.77 -10.38 -0.10 -6.91 16 9 C 0.21 2.88 10.90 -16.76 -0.18 2.70 16 10 C -0.24 -3.47 5.91 -104.71 -0.62 -4.09 16 11 C 0.51 8.75 7.85 34.60 0.27 9.02 16 12 O -0.50 -9.16 13.33 -19.25 -0.26 -9.41 16 13 O -0.35 -6.66 9.59 -40.51 -0.39 -7.05 16 14 C 0.08 1.63 5.41 37.16 0.20 1.83 16 15 C 0.02 0.63 5.35 -27.88 -0.15 0.48 16 16 C -0.53 -14.55 9.11 -34.44 -0.31 -14.86 16 17 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 18 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -25.96 13.29 55.43 0.74 -25.22 16 20 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 21 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 24 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 25 H 0.11 1.38 5.96 -51.93 -0.31 1.08 16 26 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.10 0.80 8.09 -51.93 -0.42 0.38 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.62 8.01 -51.93 -0.42 0.20 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.62 8.00 -51.93 -0.42 0.20 16 34 H 0.19 2.28 7.73 -52.49 -0.41 1.88 16 35 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 37 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 335.92 15.07 5.06 5.06 Total: -1.00 -30.21 335.92 -7.52 -37.73 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -5.73 Total: -2.82 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: -1.75 Total: -0.44 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: 0.57 Total: -39.15 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -0.65 Total: -16.46 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.21 -7.52 -37.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884845181.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.055 kcal (2) G-P(sol) polarization free energy of solvation -30.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds