Wall clock time and date at job start Tue Mar 31 2020 00:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.32154 * 120.53491 * 2 1 4 4 C 1.31860 * 120.96883 * 179.97438 * 3 2 1 5 5 C 1.50701 * 118.94551 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.47138 * 119.99812 * 5 4 3 7 7 C 1.53001 * 109.47331 * 240.00154 * 5 4 3 8 8 N 1.31887 * 122.11235 * 0.27723 * 4 3 2 9 9 C 1.32127 * 120.96777 * 359.44519 * 8 4 3 10 10 C 1.39975 * 120.54262 * 179.97438 * 2 1 3 11 11 C 1.47707 * 120.94765 * 0.02562 * 10 2 1 12 12 O 1.21479 * 120.00101 * 6.08012 * 11 10 2 13 13 O 1.34707 * 120.00244 * 186.07516 * 11 10 2 14 14 C 1.45202 * 117.00021 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47203 * 180.02562 * 14 13 11 16 16 C 1.50701 * 109.47247 * 180.02562 * 15 14 13 17 17 H 1.07997 * 119.99795 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99817 * 179.97438 * 16 15 14 19 19 N 1.31510 * 120.00126 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99563 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47362 * 60.00437 * 20 18 16 22 22 H 1.48510 * 109.47024 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47178 * 299.99959 * 20 18 16 24 24 H 1.08999 * 109.46628 * 96.31549 * 1 2 3 25 25 H 1.09000 * 109.46526 * 216.31242 * 1 2 3 26 26 H 1.08994 * 109.47630 * 336.31424 * 1 2 3 27 27 H 1.08999 * 109.46877 * 0.02562 * 5 4 3 28 28 H 1.09001 * 109.47269 * 179.97438 * 6 5 4 29 29 H 1.08999 * 109.47017 * 60.00354 * 6 5 4 30 30 H 1.08992 * 109.47577 * 300.00291 * 6 5 4 31 31 H 1.09000 * 109.46716 * 59.99542 * 7 5 4 32 32 H 1.09001 * 109.47121 * 179.97438 * 7 5 4 33 33 H 1.09001 * 109.46757 * 300.00218 * 7 5 4 34 34 H 1.08001 * 120.54449 * 180.27728 * 9 8 4 35 35 H 1.09002 * 109.47556 * 300.00276 * 14 13 11 36 36 H 1.09003 * 109.47228 * 60.00460 * 14 13 11 37 37 H 1.09005 * 109.46967 * 299.99633 * 15 14 13 38 38 H 1.08995 * 109.47144 * 59.99727 * 15 14 13 39 39 H 0.96999 * 119.99774 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1785 1.1383 0.0000 4 6 3.4970 1.1483 0.0005 5 6 4.2164 2.4725 0.0011 6 6 5.0931 2.5761 1.2507 7 6 5.0941 2.5767 -1.2478 8 7 4.2066 0.0365 -0.0044 9 6 3.6174 -1.1461 0.0009 10 6 2.2184 -1.2055 0.0005 11 6 1.5134 -2.5035 0.0006 12 8 0.3042 -2.5380 -0.1113 13 8 2.2112 -3.6491 0.1245 14 6 1.4525 -4.8871 0.1170 15 6 2.4087 -6.0720 0.2678 16 6 1.6214 -7.3570 0.2594 17 1 0.5466 -7.3311 0.1572 18 6 2.2733 -8.5657 0.3823 19 7 3.5821 -8.5972 0.5072 20 14 1.2973 -10.1584 0.3725 21 1 0.5582 -10.2783 -0.9098 22 1 2.2254 -11.3086 0.5188 23 1 0.3327 -10.1548 1.5016 24 1 -0.3632 -0.1130 -1.0214 25 1 -0.3632 -0.8281 0.6086 26 1 -0.3634 0.9410 0.4128 27 1 3.4868 3.2823 0.0014 28 1 5.6138 3.5337 1.2509 29 1 5.8227 1.7663 1.2508 30 1 4.4679 2.5019 2.1404 31 1 4.4694 2.5028 -2.1380 32 1 5.6140 3.5347 -1.2476 33 1 5.8237 1.7669 -1.2477 34 1 4.2051 -2.0522 0.0014 35 1 0.7444 -4.8844 0.9457 36 1 0.9100 -4.9752 -0.8243 37 1 3.1171 -6.0750 -0.5606 38 1 2.9509 -5.9838 1.2092 39 1 4.0407 -9.4475 0.5940 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884845181.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:42:04 Heat of formation + Delta-G solvation = -78.198640 kcal Electronic energy + Delta-G solvation = -20847.257650 eV Core-core repulsion = 17560.822449 eV Total energy + Delta-G solvation = -3286.435200 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.63937 -41.17849 -37.96593 -36.75041 -35.58110 -35.32142 -33.19261 -32.24110 -29.93308 -28.06108 -27.31059 -26.29884 -24.50378 -23.46395 -22.53263 -21.37204 -19.58879 -18.80455 -18.33356 -17.71239 -17.52544 -17.20860 -16.52560 -16.37442 -15.28632 -15.16211 -15.07180 -14.79468 -14.41426 -14.34410 -14.26149 -13.71224 -13.58186 -13.25235 -13.13242 -12.97186 -12.93640 -12.60368 -12.57557 -12.31673 -12.17896 -11.89572 -11.80037 -11.73617 -11.50932 -11.48414 -11.20825 -10.72955 -10.60066 -10.50992 -8.26882 -6.39880 -0.88784 -0.19866 1.28608 1.40140 1.44884 1.49152 1.55630 2.39630 2.46610 2.60177 2.80670 3.07980 3.17342 3.45484 3.70594 3.84710 4.02668 4.14631 4.23164 4.23393 4.39031 4.49241 4.59319 4.68903 4.69390 4.82300 4.84570 4.93928 4.96011 5.04753 5.14784 5.27328 5.32721 5.41258 5.47024 5.47198 5.70240 5.73739 6.06169 6.54956 6.73901 6.80180 7.29952 8.85420 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.030614 B = 0.003155 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.405172 B = 8873.289252 C = 9583.383581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.240 3.760 3 N -0.531 5.531 4 C 0.347 3.653 5 C -0.030 4.030 6 C -0.137 4.137 7 C -0.137 4.137 8 N -0.529 5.529 9 C 0.216 3.784 10 C -0.254 4.254 11 C 0.516 3.484 12 O -0.516 6.516 13 O -0.357 6.357 14 C 0.093 3.907 15 C 0.030 3.970 16 C -0.550 4.550 17 H 0.067 0.933 18 C 0.007 3.993 19 N -0.927 5.927 20 Si 0.971 3.029 21 H -0.266 1.266 22 H -0.281 1.281 23 H -0.266 1.266 24 H 0.099 0.901 25 H 0.094 0.906 26 H 0.098 0.902 27 H 0.109 0.891 28 H 0.093 0.907 29 H 0.059 0.941 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.093 0.907 33 H 0.059 0.941 34 H 0.195 0.805 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.008 0.992 38 H 0.007 0.993 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.499 23.101 -1.061 23.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.094 3.906 3 N -0.246 5.246 4 C 0.082 3.918 5 C -0.051 4.051 6 C -0.195 4.195 7 C -0.195 4.195 8 N -0.243 5.243 9 C 0.050 3.950 10 C -0.260 4.260 11 C 0.360 3.640 12 O -0.406 6.406 13 O -0.273 6.273 14 C 0.020 3.980 15 C -0.007 4.007 16 C -0.588 4.588 17 H 0.085 0.915 18 C -0.192 4.192 19 N -0.566 5.566 20 Si 0.795 3.205 21 H -0.190 1.190 22 H -0.206 1.206 23 H -0.191 1.191 24 H 0.117 0.883 25 H 0.112 0.888 26 H 0.116 0.884 27 H 0.127 0.873 28 H 0.112 0.888 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.111 0.889 33 H 0.078 0.922 34 H 0.211 0.789 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.026 0.974 38 H 0.026 0.974 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.763 23.809 -1.077 23.845 hybrid contribution -0.791 -2.157 0.008 2.297 sum -0.028 21.652 -1.069 21.678 Atomic orbital electron populations 1.21123 0.85284 1.05113 1.05082 1.22301 0.98997 0.85989 0.83351 1.68422 1.09912 1.28720 1.17583 1.24282 0.86569 0.96070 0.84871 1.20271 0.97479 0.88565 0.98736 1.21789 0.99122 1.03921 0.94681 1.21790 0.99115 1.03915 0.94670 1.68408 1.41012 0.98306 1.16623 1.24000 0.90673 0.97283 0.83090 1.20770 0.96909 0.92421 1.15911 1.20818 0.85564 0.84684 0.72892 1.90761 1.15279 1.88026 1.46584 1.86531 1.42649 1.15535 1.82603 1.23259 0.94494 0.78755 1.01490 1.18988 0.94657 0.90300 0.96755 1.21349 0.94268 0.91349 1.51856 0.91529 1.25939 0.95982 1.03169 0.94127 1.70081 1.09168 1.27553 1.49762 0.85405 0.78259 0.77529 0.79300 1.19040 1.20633 1.19059 0.88298 0.88811 0.88371 0.87258 0.88850 0.92230 0.93333 0.93342 0.88856 0.92207 0.78862 0.91674 0.91660 0.97365 0.97421 0.92355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.44 8.99 71.24 0.64 -1.80 16 2 C 0.24 6.31 6.87 42.93 0.29 6.61 16 3 N -0.53 -13.28 10.22 -174.98 -1.79 -15.07 16 4 C 0.35 8.10 6.34 138.70 0.88 8.98 16 5 C -0.03 -0.49 3.25 -11.54 -0.04 -0.52 16 6 C -0.14 -1.89 9.09 71.98 0.65 -1.23 16 7 C -0.14 -1.87 9.08 71.98 0.65 -1.22 16 8 N -0.53 -13.40 9.77 -186.74 -1.82 -15.22 16 9 C 0.22 5.78 10.90 85.08 0.93 6.71 16 10 C -0.25 -7.36 5.91 -19.92 -0.12 -7.48 16 11 C 0.52 17.63 7.85 70.32 0.55 18.18 16 12 O -0.52 -18.62 13.33 19.91 0.27 -18.36 16 13 O -0.36 -13.72 9.59 -56.17 -0.54 -14.26 16 14 C 0.09 3.99 5.41 71.98 0.39 4.38 16 15 C 0.03 1.57 5.35 29.85 0.16 1.73 16 16 C -0.55 -30.54 9.11 25.60 0.23 -30.31 16 17 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 18 C 0.01 0.39 5.46 84.66 0.46 0.85 16 19 N -0.93 -54.85 13.29 21.45 0.28 -54.56 16 20 Si 0.97 43.00 29.54 68.60 2.03 45.03 16 21 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 22 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 23 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 24 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 25 H 0.09 2.38 5.96 -2.39 -0.01 2.37 16 26 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.11 1.52 8.09 -2.39 -0.02 1.50 16 28 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.06 0.96 8.01 -2.39 -0.02 0.94 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.06 0.96 8.00 -2.39 -0.02 0.94 16 34 H 0.19 4.78 7.73 -2.91 -0.02 4.76 16 35 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 36 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 37 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 38 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 39 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -64.22 335.92 5.16 -59.06 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: 1.04 Total: 8.51 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: 5.69 Total: 4.87 kcal Atomic # 7 Polarization: -81.53 SS G_CDS: -3.33 Total: -84.85 kcal Atomic # 8 Polarization: -32.34 SS G_CDS: -0.27 Total: -32.62 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -64.22 5.16 -59.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884845181.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.139 kcal (2) G-P(sol) polarization free energy of solvation -64.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds