Wall clock time and date at job start Tue Mar 31 2020 00:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38124 * 126.29397 * 2 1 4 4 C 1.47282 * 126.42896 * 359.97438 * 3 2 1 5 5 O 1.21531 * 120.00146 * 0.02562 * 4 3 2 6 6 O 1.34751 * 120.00319 * 180.02562 * 4 3 2 7 7 C 1.45198 * 117.00381 * 179.97438 * 6 4 3 8 8 C 1.54260 * 110.03551 * 267.91036 * 7 6 4 9 9 C 1.54969 * 104.16134 * 217.13426 * 8 7 6 10 10 C 1.54889 * 102.77659 * 37.88980 * 9 8 7 11 11 C 1.53878 * 110.03288 * 150.68996 * 7 6 4 12 12 C 1.41345 * 107.14373 * 179.97438 * 3 2 1 13 13 N 1.30428 * 108.01295 * 359.97438 * 12 3 2 14 14 N 1.34219 * 126.29656 * 179.68139 * 2 1 3 15 15 C 1.46503 * 125.74366 * 0.02941 * 14 2 1 16 16 C 1.50696 * 109.47431 * 89.99512 * 15 14 2 17 17 H 1.08006 * 119.99809 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00222 * 179.97438 * 16 15 14 19 19 N 1.31521 * 119.99994 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00100 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47524 * 89.99742 * 20 18 16 22 22 H 1.48500 * 109.47177 * 209.99702 * 20 18 16 23 23 H 1.48506 * 109.46716 * 329.99340 * 20 18 16 24 24 H 1.09001 * 109.46953 * 90.02639 * 1 2 3 25 25 H 1.09000 * 109.47318 * 210.02237 * 1 2 3 26 26 H 1.09000 * 109.47161 * 330.02867 * 1 2 3 27 27 H 1.09006 * 110.01359 * 29.30371 * 7 6 4 28 28 H 1.08997 * 110.48691 * 335.78268 * 8 7 6 29 29 H 1.09004 * 110.48673 * 98.42683 * 8 7 6 30 30 H 1.08999 * 110.71986 * 279.57514 * 9 8 7 31 31 H 1.09001 * 110.92285 * 156.29637 * 9 8 7 32 32 H 1.08999 * 110.48541 * 203.40682 * 10 9 8 33 33 H 1.08999 * 110.60374 * 80.81644 * 10 9 8 34 34 H 1.08994 * 110.03551 * 238.57504 * 11 7 6 35 35 H 1.09001 * 110.03318 * 359.95610 * 11 7 6 36 36 H 1.08000 * 125.98836 * 179.97438 * 12 3 2 37 37 H 1.08997 * 109.47191 * 209.99997 * 15 14 2 38 38 H 1.09004 * 109.47005 * 329.99471 * 15 14 2 39 39 H 0.97002 * 119.99739 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3247 1.1133 0.0000 4 6 1.8872 2.5196 -0.0005 5 8 0.7018 2.7873 -0.0006 6 8 2.8014 3.5096 -0.0010 7 6 2.2982 4.8716 -0.0021 8 6 2.1650 5.3847 -1.4507 9 6 2.5784 6.8757 -1.3644 10 6 3.7384 6.8507 -0.3384 11 6 3.2979 5.8034 0.7052 12 6 3.6599 0.6496 0.0006 13 7 3.6340 -0.6544 0.0015 14 7 2.3016 -1.0817 0.0060 15 6 1.8498 -2.4754 0.0132 16 6 1.6954 -2.9607 -1.4051 17 1 1.9125 -2.2975 -2.2295 18 6 1.2780 -4.2516 -1.6504 19 7 1.1437 -4.6753 -2.8883 20 14 0.9033 -5.3989 -0.2247 21 1 -0.5280 -5.2717 0.1501 22 1 1.1865 -6.7995 -0.6288 23 1 1.7535 -5.0376 0.9380 24 1 -0.3633 -0.0005 -1.0277 25 1 -0.3634 -0.8898 0.5142 26 1 -0.3633 0.8902 0.5134 27 1 1.3310 4.9124 0.4989 28 1 2.8388 4.8398 -2.1119 29 1 1.1347 5.2930 -1.7947 30 1 1.7518 7.4845 -0.9982 31 1 2.9257 7.2399 -2.3313 32 1 3.8558 7.8286 0.1286 33 1 4.6680 6.5438 -0.8177 34 1 2.8156 6.2970 1.5489 35 1 4.1604 5.2331 1.0500 36 1 4.5461 1.2669 0.0004 37 1 2.5842 -3.0927 0.5305 38 1 0.8910 -2.5439 0.5271 39 1 0.8497 -5.5835 -3.0608 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887591145.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:42 Heat of formation + Delta-G solvation = -31.769728 kcal Electronic energy + Delta-G solvation = -21319.205323 eV Core-core repulsion = 18034.783432 eV Total energy + Delta-G solvation = -3284.421891 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -40.97127 -39.88260 -37.63130 -35.43112 -33.93953 -32.24238 -31.41262 -28.95500 -28.71292 -27.66619 -26.81375 -23.46967 -22.47497 -20.97802 -20.65116 -19.98703 -18.94203 -17.57140 -17.25384 -16.43106 -15.79304 -15.61991 -15.07090 -14.78833 -14.53063 -14.11650 -13.62713 -13.56897 -13.09839 -12.77099 -12.59007 -12.36418 -12.30203 -12.11509 -11.95882 -11.69996 -11.38243 -11.29688 -11.25663 -10.87179 -10.86771 -10.80456 -10.47724 -10.36329 -10.24312 -9.86137 -9.78684 -8.87541 -8.71600 -8.12235 -6.35423 -4.40631 1.87637 2.64726 2.81172 3.08476 3.16043 3.17298 3.33330 3.64052 4.13374 4.34283 4.37942 4.68844 4.89651 5.02293 5.07314 5.19534 5.23473 5.26727 5.36307 5.40923 5.45121 5.56001 5.65933 5.69320 5.80271 5.84427 5.94680 5.99819 6.02720 6.09119 6.20933 6.36930 6.41626 6.52803 6.79858 7.00430 7.14710 7.47197 8.15437 8.16635 8.28847 8.67534 9.18054 10.76746 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.039169 B = 0.003495 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.670617 B = 8009.889512 C = 8092.973893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.175 3.825 3 C -0.316 4.316 4 C 0.550 3.450 5 O -0.530 6.530 6 O -0.349 6.349 7 C 0.085 3.915 8 C -0.142 4.142 9 C -0.123 4.123 10 C -0.123 4.123 11 C -0.123 4.123 12 C 0.084 3.916 13 N -0.294 5.294 14 N -0.311 5.311 15 C 0.224 3.776 16 C -0.547 4.547 17 H 0.082 0.918 18 C 0.082 3.918 19 N -0.882 5.882 20 Si 0.873 3.127 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.263 1.263 24 H 0.090 0.910 25 H 0.074 0.926 26 H 0.094 0.906 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.187 0.813 37 H 0.057 0.943 38 H 0.049 0.951 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.877 18.866 7.062 20.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.037 3.963 3 C -0.329 4.329 4 C 0.397 3.603 5 O -0.421 6.421 6 O -0.267 6.267 7 C 0.030 3.970 8 C -0.179 4.179 9 C -0.160 4.160 10 C -0.160 4.160 11 C -0.161 4.161 12 C -0.104 4.104 13 N -0.113 5.113 14 N -0.087 5.087 15 C 0.106 3.894 16 C -0.585 4.585 17 H 0.100 0.900 18 C -0.123 4.123 19 N -0.518 5.518 20 Si 0.698 3.302 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.187 1.187 24 H 0.108 0.892 25 H 0.093 0.907 26 H 0.113 0.887 27 H 0.104 0.896 28 H 0.098 0.902 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.204 0.796 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.178 17.531 6.949 18.983 hybrid contribution -0.709 -0.012 0.446 0.838 sum 1.469 17.518 7.395 19.072 Atomic orbital electron populations 1.20644 0.86485 1.03884 1.04471 1.21446 0.94964 0.86354 0.93505 1.18849 0.93715 0.89502 1.30837 1.20028 0.83551 0.85091 0.71585 1.90742 1.17990 1.84489 1.48837 1.86637 1.39677 1.15684 1.84663 1.23361 0.98400 0.78342 0.96887 1.22815 1.02599 0.96228 0.96292 1.22454 0.98222 0.95833 0.99540 1.22346 0.98665 0.98572 0.96449 1.22244 0.99587 0.96102 0.98137 1.23943 0.96741 0.92013 0.97705 1.77216 0.97701 1.12476 1.23931 1.48946 1.02909 1.07516 1.49289 1.20196 0.95818 0.73094 1.00335 1.21084 1.48205 0.99232 0.89984 0.89978 1.24789 0.94254 0.97363 0.95920 1.69865 1.45018 1.18075 1.18871 0.86902 0.79521 0.81041 0.82709 1.19479 1.20315 1.18743 0.89176 0.90727 0.88715 0.89559 0.90248 0.90784 0.91295 0.91096 0.91364 0.91127 0.90670 0.89959 0.79638 0.92518 0.93317 0.91923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.66 9.57 36.01 0.34 -1.32 16 2 C 0.17 3.48 7.01 -81.59 -0.57 2.91 16 3 C -0.32 -5.91 6.13 -105.08 -0.64 -6.56 16 4 C 0.55 9.52 7.95 34.41 0.27 9.79 16 5 O -0.53 -9.76 14.10 -19.29 -0.27 -10.03 16 6 O -0.35 -5.17 9.64 -40.63 -0.39 -5.56 16 7 C 0.09 1.02 3.24 -25.61 -0.08 0.93 16 8 C -0.14 -1.53 6.57 -25.03 -0.16 -1.69 16 9 C -0.12 -0.99 6.91 -24.70 -0.17 -1.16 16 10 C -0.12 -0.94 6.83 -25.07 -0.17 -1.11 16 11 C -0.12 -1.12 6.62 -25.61 -0.17 -1.29 16 12 C 0.08 1.52 11.87 -16.97 -0.20 1.32 16 13 N -0.29 -6.31 12.50 30.87 0.39 -5.92 16 14 N -0.31 -6.86 3.56 -57.76 -0.21 -7.06 16 15 C 0.22 5.16 5.03 -5.19 -0.03 5.14 16 16 C -0.55 -14.88 9.94 -34.44 -0.34 -15.22 16 17 H 0.08 2.53 8.06 -52.48 -0.42 2.11 16 18 C 0.08 2.22 5.47 -17.82 -0.10 2.13 16 19 N -0.88 -25.68 13.96 55.43 0.77 -24.91 16 20 Si 0.87 19.56 27.47 -169.99 -4.67 14.89 16 21 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 23 H -0.26 -5.60 6.54 56.52 0.37 -5.23 16 24 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 25 H 0.07 1.19 7.04 -51.93 -0.37 0.82 16 26 H 0.09 1.52 6.50 -51.93 -0.34 1.18 16 27 H 0.09 1.09 7.17 -51.93 -0.37 0.72 16 28 H 0.08 0.92 8.08 -51.93 -0.42 0.50 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.77 7.96 -51.93 -0.41 0.35 16 36 H 0.19 2.64 8.06 -52.49 -0.42 2.22 16 37 H 0.06 1.31 7.20 -51.93 -0.37 0.93 16 38 H 0.05 1.02 6.44 -51.93 -0.33 0.69 16 39 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 326.94 15.07 4.93 4.93 Total: -1.00 -30.77 326.94 -7.06 -37.83 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -5.59 Total: 1.97 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -2.02 Total: -6.13 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: 0.95 Total: -37.90 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -0.66 Total: -15.59 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -4.67 Total: 14.89 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.77 -7.06 -37.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887591145.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.064 kcal (2) G-P(sol) polarization free energy of solvation -30.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds