Wall clock time and date at job start Tue Mar 31 2020 00:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38124 * 126.29397 * 2 1 4 4 C 1.47282 * 126.42896 * 359.97438 * 3 2 1 5 5 O 1.21531 * 120.00146 * 0.02562 * 4 3 2 6 6 O 1.34751 * 120.00319 * 180.02562 * 4 3 2 7 7 C 1.45198 * 117.00381 * 179.97438 * 6 4 3 8 8 C 1.54260 * 110.03551 * 267.91036 * 7 6 4 9 9 C 1.54969 * 104.16134 * 217.13426 * 8 7 6 10 10 C 1.54889 * 102.77659 * 37.88980 * 9 8 7 11 11 C 1.53878 * 110.03288 * 150.68996 * 7 6 4 12 12 C 1.41345 * 107.14373 * 179.97438 * 3 2 1 13 13 N 1.30428 * 108.01295 * 359.97438 * 12 3 2 14 14 N 1.34219 * 126.29656 * 179.68139 * 2 1 3 15 15 C 1.46503 * 125.74366 * 0.02941 * 14 2 1 16 16 C 1.50696 * 109.47431 * 89.99512 * 15 14 2 17 17 H 1.08006 * 119.99809 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00222 * 179.97438 * 16 15 14 19 19 N 1.31521 * 119.99994 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00100 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47524 * 89.99742 * 20 18 16 22 22 H 1.48500 * 109.47177 * 209.99702 * 20 18 16 23 23 H 1.48506 * 109.46716 * 329.99340 * 20 18 16 24 24 H 1.09001 * 109.46953 * 90.02639 * 1 2 3 25 25 H 1.09000 * 109.47318 * 210.02237 * 1 2 3 26 26 H 1.09000 * 109.47161 * 330.02867 * 1 2 3 27 27 H 1.09006 * 110.01359 * 29.30371 * 7 6 4 28 28 H 1.08997 * 110.48691 * 335.78268 * 8 7 6 29 29 H 1.09004 * 110.48673 * 98.42683 * 8 7 6 30 30 H 1.08999 * 110.71986 * 279.57514 * 9 8 7 31 31 H 1.09001 * 110.92285 * 156.29637 * 9 8 7 32 32 H 1.08999 * 110.48541 * 203.40682 * 10 9 8 33 33 H 1.08999 * 110.60374 * 80.81644 * 10 9 8 34 34 H 1.08994 * 110.03551 * 238.57504 * 11 7 6 35 35 H 1.09001 * 110.03318 * 359.95610 * 11 7 6 36 36 H 1.08000 * 125.98836 * 179.97438 * 12 3 2 37 37 H 1.08997 * 109.47191 * 209.99997 * 15 14 2 38 38 H 1.09004 * 109.47005 * 329.99471 * 15 14 2 39 39 H 0.97002 * 119.99739 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3247 1.1133 0.0000 4 6 1.8872 2.5196 -0.0005 5 8 0.7018 2.7873 -0.0006 6 8 2.8014 3.5096 -0.0010 7 6 2.2982 4.8716 -0.0021 8 6 2.1650 5.3847 -1.4507 9 6 2.5784 6.8757 -1.3644 10 6 3.7384 6.8507 -0.3384 11 6 3.2979 5.8034 0.7052 12 6 3.6599 0.6496 0.0006 13 7 3.6340 -0.6544 0.0015 14 7 2.3016 -1.0817 0.0060 15 6 1.8498 -2.4754 0.0132 16 6 1.6954 -2.9607 -1.4051 17 1 1.9125 -2.2975 -2.2295 18 6 1.2780 -4.2516 -1.6504 19 7 1.1437 -4.6753 -2.8883 20 14 0.9033 -5.3989 -0.2247 21 1 -0.5280 -5.2717 0.1501 22 1 1.1865 -6.7995 -0.6288 23 1 1.7535 -5.0376 0.9380 24 1 -0.3633 -0.0005 -1.0277 25 1 -0.3634 -0.8898 0.5142 26 1 -0.3633 0.8902 0.5134 27 1 1.3310 4.9124 0.4989 28 1 2.8388 4.8398 -2.1119 29 1 1.1347 5.2930 -1.7947 30 1 1.7518 7.4845 -0.9982 31 1 2.9257 7.2399 -2.3313 32 1 3.8558 7.8286 0.1286 33 1 4.6680 6.5438 -0.8177 34 1 2.8156 6.2970 1.5489 35 1 4.1604 5.2331 1.0500 36 1 4.5461 1.2669 0.0004 37 1 2.5842 -3.0927 0.5305 38 1 0.8910 -2.5439 0.5271 39 1 0.8497 -5.5835 -3.0608 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887591145.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:41 Heat of formation + Delta-G solvation = -49.491917 kcal Electronic energy + Delta-G solvation = -21319.973815 eV Core-core repulsion = 18034.783432 eV Total energy + Delta-G solvation = -3285.190383 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.47739 -41.12621 -38.63590 -36.57840 -35.79803 -34.05027 -32.98383 -30.14641 -29.68428 -29.00749 -28.18802 -25.20585 -23.97812 -22.07058 -21.59598 -21.03547 -20.49305 -19.30532 -18.93556 -17.65765 -17.05790 -16.84834 -16.45246 -16.16069 -15.83682 -15.55406 -15.21645 -14.56716 -14.35200 -14.28654 -14.02433 -13.86917 -13.76216 -13.35127 -13.18918 -13.05149 -12.85427 -12.56561 -12.18269 -12.04687 -11.98495 -11.88765 -11.85855 -11.70768 -11.53186 -11.37271 -11.15634 -10.92362 -10.35450 -9.68666 -8.43928 -6.56767 0.39200 1.14454 1.32522 1.34786 1.42914 1.49239 1.92912 2.21668 2.24446 2.88481 3.58097 3.60553 3.61276 3.67645 3.91629 3.98783 4.09515 4.32607 4.37559 4.48102 4.50697 4.51501 4.62692 4.64840 4.69051 4.76772 4.89658 4.92311 5.02685 5.05228 5.15228 5.15861 5.21235 5.24232 5.45255 5.51979 5.61432 5.76539 6.15470 6.46309 6.65608 6.90479 7.07302 8.72556 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.039169 B = 0.003495 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.670617 B = 8009.889512 C = 8092.973893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.162 3.838 3 C -0.323 4.323 4 C 0.555 3.445 5 O -0.544 6.544 6 O -0.347 6.347 7 C 0.075 3.925 8 C -0.145 4.145 9 C -0.117 4.117 10 C -0.118 4.118 11 C -0.120 4.120 12 C 0.098 3.902 13 N -0.331 5.331 14 N -0.333 5.333 15 C 0.232 3.768 16 C -0.556 4.556 17 H 0.026 0.974 18 C 0.024 3.976 19 N -0.935 5.935 20 Si 0.950 3.050 21 H -0.250 1.250 22 H -0.278 1.278 23 H -0.241 1.241 24 H 0.083 0.917 25 H 0.088 0.912 26 H 0.106 0.894 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.223 0.777 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.985 20.212 9.180 22.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.026 3.974 3 C -0.336 4.336 4 C 0.402 3.598 5 O -0.436 6.436 6 O -0.264 6.264 7 C 0.020 3.980 8 C -0.183 4.183 9 C -0.154 4.154 10 C -0.156 4.156 11 C -0.157 4.157 12 C -0.089 4.089 13 N -0.150 5.150 14 N -0.109 5.109 15 C 0.113 3.887 16 C -0.594 4.594 17 H 0.044 0.956 18 C -0.177 4.177 19 N -0.573 5.573 20 Si 0.770 3.230 21 H -0.174 1.174 22 H -0.204 1.204 23 H -0.165 1.165 24 H 0.102 0.898 25 H 0.107 0.893 26 H 0.124 0.876 27 H 0.095 0.905 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.108 0.892 33 H 0.089 0.911 34 H 0.110 0.890 35 H 0.099 0.901 36 H 0.240 0.760 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.297 18.924 9.073 21.112 hybrid contribution -0.698 -0.253 -0.317 0.807 sum 1.599 18.670 8.757 20.684 Atomic orbital electron populations 1.20697 0.84932 1.05113 1.04350 1.21977 0.96167 0.86292 0.92950 1.19118 0.93936 0.90235 1.30301 1.19806 0.83555 0.85109 0.71297 1.90729 1.18621 1.84758 1.49497 1.86622 1.39084 1.16617 1.84055 1.23756 0.99075 0.77148 0.98014 1.22836 1.01824 0.98345 0.95299 1.22458 0.98821 0.93645 1.00493 1.22360 0.98269 0.99119 0.95837 1.22293 0.98805 0.95778 0.98814 1.24540 0.97826 0.91265 0.95281 1.77159 0.97905 1.14131 1.25824 1.48841 1.03488 1.07461 1.51146 1.19987 0.97119 0.74043 0.97575 1.21178 1.48377 0.98948 0.90902 0.95566 1.25826 0.93552 0.99131 0.99148 1.70028 1.46488 1.18919 1.21846 0.85694 0.80555 0.77750 0.78968 1.17440 1.20358 1.16453 0.89839 0.89338 0.87593 0.90452 0.91321 0.91827 0.90239 0.90011 0.89197 0.91092 0.89032 0.90074 0.76022 0.92247 0.90597 0.91595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.15 9.57 71.24 0.68 -2.47 16 2 C 0.16 6.46 7.01 42.17 0.30 6.75 16 3 C -0.32 -11.94 6.13 -20.16 -0.12 -12.06 16 4 C 0.55 18.84 7.95 70.20 0.56 19.40 16 5 O -0.54 -19.79 14.10 19.74 0.28 -19.52 16 6 O -0.35 -9.88 9.64 -56.62 -0.55 -10.43 16 7 C 0.07 1.69 3.24 31.32 0.10 1.79 16 8 C -0.15 -3.00 6.57 31.69 0.21 -2.80 16 9 C -0.12 -1.61 6.91 31.91 0.22 -1.39 16 10 C -0.12 -1.46 6.83 31.67 0.22 -1.24 16 11 C -0.12 -1.88 6.62 31.32 0.21 -1.67 16 12 C 0.10 3.49 11.87 85.67 1.02 4.50 16 13 N -0.33 -14.21 12.50 -56.25 -0.70 -14.91 16 14 N -0.33 -14.74 3.56 -336.65 -1.20 -15.94 16 15 C 0.23 10.60 5.03 85.63 0.43 11.03 16 16 C -0.56 -31.13 9.94 25.60 0.25 -30.87 16 17 H 0.03 1.71 8.06 -2.91 -0.02 1.68 16 18 C 0.02 1.31 5.47 84.65 0.46 1.77 16 19 N -0.93 -56.09 13.96 21.45 0.30 -55.79 16 20 Si 0.95 39.66 27.47 68.60 1.88 41.55 16 21 H -0.25 -9.67 7.11 99.48 0.71 -8.97 16 22 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 23 H -0.24 -9.18 6.54 99.48 0.65 -8.53 16 24 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 25 H 0.09 2.70 7.04 -2.39 -0.02 2.68 16 26 H 0.11 3.32 6.50 -2.39 -0.02 3.30 16 27 H 0.08 1.89 7.17 -2.38 -0.02 1.88 16 28 H 0.07 1.55 8.08 -2.39 -0.02 1.53 16 29 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 30 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.08 0.97 8.14 -2.39 -0.02 0.96 16 32 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.08 1.32 7.96 -2.39 -0.02 1.30 16 36 H 0.22 5.87 8.06 -2.91 -0.02 5.85 16 37 H 0.06 2.67 7.20 -2.39 -0.02 2.65 16 38 H 0.08 3.04 6.44 -2.38 -0.02 3.02 16 39 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -68.95 326.94 5.54 -63.42 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: 0.99 Total: 18.87 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: 4.53 Total: -7.25 kcal Atomic # 7 Polarization: -85.03 SS G_CDS: -1.60 Total: -86.64 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -0.27 Total: -29.95 kcal Atomic # 14 Polarization: 39.66 SS G_CDS: 1.88 Total: 41.55 kcal Total: -68.95 5.54 -63.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887591145.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.923 kcal (2) G-P(sol) polarization free energy of solvation -68.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds