Wall clock time and date at job start Tue Mar 31 2020 00:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38124 * 126.29350 * 2 1 4 4 C 1.47294 * 126.42527 * 0.02562 * 3 2 1 5 5 O 1.21520 * 119.99867 * 359.97438 * 4 3 2 6 6 O 1.34757 * 119.99501 * 179.97438 * 4 3 2 7 7 C 1.45199 * 116.99273 * 179.97438 * 6 4 3 8 8 H 1.08999 * 109.47901 * 329.99989 * 7 6 4 9 9 C 1.53005 * 109.47193 * 90.00457 * 7 6 4 10 10 C 1.53001 * 109.46930 * 209.99790 * 7 6 4 11 11 C 1.52998 * 117.50070 * 128.62584 * 10 7 6 12 12 C 1.53003 * 60.00219 * 252.51211 * 11 10 7 13 13 C 1.41337 * 107.14537 * 179.97438 * 3 2 1 14 14 N 1.30429 * 108.01482 * 0.02562 * 13 3 2 15 15 N 1.34214 * 126.29776 * 179.69380 * 2 1 3 16 16 C 1.46504 * 125.74596 * 359.97438 * 15 2 1 17 17 C 1.50702 * 109.46674 * 90.00343 * 16 15 2 18 18 H 1.07996 * 120.00015 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99503 * 180.02562 * 17 16 15 20 20 N 1.31519 * 119.99548 * 179.97438 * 19 17 16 21 21 Si 1.86794 * 120.00433 * 359.97438 * 19 17 16 22 22 H 1.48510 * 109.47183 * 89.99976 * 21 19 17 23 23 H 1.48496 * 109.47296 * 209.99932 * 21 19 17 24 24 H 1.48503 * 109.46910 * 330.00402 * 21 19 17 25 25 H 1.08999 * 109.46995 * 90.02304 * 1 2 3 26 26 H 1.08994 * 109.46790 * 210.01991 * 1 2 3 27 27 H 1.08997 * 109.47305 * 330.02432 * 1 2 3 28 28 H 1.08999 * 109.47079 * 59.99028 * 9 7 6 29 29 H 1.08998 * 109.47268 * 179.97438 * 9 7 6 30 30 H 1.08997 * 109.46726 * 299.99832 * 9 7 6 31 31 H 1.09004 * 115.55339 * 274.33312 * 10 7 6 32 32 H 1.09003 * 117.49843 * 359.97438 * 11 10 7 33 33 H 1.08999 * 117.50513 * 145.02231 * 11 10 7 34 34 H 1.08995 * 117.49568 * 252.51307 * 12 11 10 35 35 H 1.09000 * 117.52121 * 107.47421 * 12 11 10 36 36 H 1.08008 * 125.99241 * 179.97438 * 13 3 2 37 37 H 1.08993 * 109.47746 * 210.00230 * 16 15 2 38 38 H 1.08998 * 109.47060 * 330.00507 * 16 15 2 39 39 H 0.97000 * 119.99825 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3246 1.1133 0.0000 4 6 1.8871 2.5197 0.0005 5 8 0.7017 2.7872 0.0006 6 8 2.8014 3.5097 0.0010 7 6 2.2980 4.8716 0.0009 8 1 1.3375 4.9041 -0.5133 9 6 2.1208 5.3500 1.4434 10 6 3.2933 5.7831 -0.7198 11 6 2.7498 6.6847 -1.8300 12 6 3.6076 5.4682 -2.1838 13 6 3.6598 0.6497 0.0006 14 7 3.6340 -0.6544 0.0004 15 7 2.3016 -1.0817 0.0058 16 6 1.8499 -2.4753 0.0138 17 6 1.6947 -2.9611 -1.4044 18 1 1.9112 -2.2982 -2.2290 19 6 1.2762 -4.2519 -1.6489 20 7 1.1402 -4.6757 -2.8865 21 14 0.9023 -5.3987 -0.2226 22 1 -0.5285 -5.2705 0.1538 23 1 1.1843 -6.7995 -0.6267 24 1 1.7540 -5.0376 0.9391 25 1 -0.3633 -0.0004 -1.0277 26 1 -0.3633 -0.8898 0.5141 27 1 -0.3634 0.8902 0.5134 28 1 3.0813 5.3175 1.9576 29 1 1.7433 6.3725 1.4434 30 1 1.4117 4.7006 1.9569 31 1 4.1032 6.1748 -0.1042 32 1 1.6831 6.6282 -2.0472 33 1 3.2018 7.6699 -1.9450 34 1 4.6240 5.6531 -2.5313 35 1 3.1056 4.6114 -2.6332 36 1 4.5461 1.2670 0.0004 37 1 2.5846 -3.0925 0.5308 38 1 0.8914 -2.5437 0.5282 39 1 0.8461 -5.5839 -3.0586 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889771129.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:09 Heat of formation + Delta-G solvation = -15.038540 kcal Electronic energy + Delta-G solvation = -21343.374303 eV Core-core repulsion = 18059.677931 eV Total energy + Delta-G solvation = -3283.696373 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -42.47455 -41.11037 -38.60404 -36.82541 -35.80275 -34.05991 -33.02599 -32.19046 -29.83498 -28.42860 -25.68150 -24.84148 -23.70432 -23.21763 -21.84993 -21.28855 -20.45955 -19.30309 -18.83170 -17.80389 -17.04754 -16.83840 -16.46668 -16.09705 -15.72750 -15.58883 -15.17335 -14.61927 -14.52822 -14.11146 -13.93548 -13.83231 -13.75692 -13.44592 -13.19546 -13.09594 -12.85097 -12.56412 -12.43434 -12.17785 -12.03826 -11.85884 -11.82722 -11.78761 -11.43607 -11.08394 -11.03264 -10.92141 -10.35047 -9.68279 -8.43711 -6.56454 0.39738 1.14935 1.31791 1.34809 1.41798 1.48296 1.84921 2.22395 2.24585 2.88387 2.96544 3.53792 3.61695 3.71601 3.86759 3.92087 4.05763 4.08016 4.15170 4.28652 4.37272 4.47871 4.50521 4.64670 4.65948 4.78630 4.81109 4.88130 4.99351 5.02701 5.05823 5.13795 5.15579 5.24067 5.27711 5.48881 5.56992 5.76681 6.15751 6.46585 6.66051 6.90731 7.07517 8.72745 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.032735 B = 0.003688 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.145000 B = 7589.389076 C = 7746.443603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.162 3.838 3 C -0.322 4.322 4 C 0.556 3.444 5 O -0.544 6.544 6 O -0.345 6.345 7 C 0.108 3.892 8 H 0.070 0.930 9 C -0.159 4.159 10 C -0.158 4.158 11 C -0.156 4.156 12 C -0.182 4.182 13 C 0.099 3.901 14 N -0.331 5.331 15 N -0.333 5.333 16 C 0.232 3.768 17 C -0.556 4.556 18 H 0.026 0.974 19 C 0.024 3.976 20 N -0.935 5.935 21 Si 0.950 3.050 22 H -0.250 1.250 23 H -0.278 1.278 24 H -0.241 1.241 25 H 0.083 0.917 26 H 0.088 0.912 27 H 0.106 0.894 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.047 0.953 31 H 0.131 0.869 32 H 0.093 0.907 33 H 0.123 0.877 34 H 0.111 0.889 35 H 0.074 0.926 36 H 0.223 0.777 37 H 0.059 0.941 38 H 0.076 0.924 39 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.846 19.778 8.852 21.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.026 3.974 3 C -0.335 4.335 4 C 0.403 3.597 5 O -0.437 6.437 6 O -0.262 6.262 7 C 0.054 3.946 8 H 0.088 0.912 9 C -0.216 4.216 10 C -0.176 4.176 11 C -0.192 4.192 12 C -0.219 4.219 13 C -0.089 4.089 14 N -0.150 5.150 15 N -0.109 5.109 16 C 0.113 3.887 17 C -0.594 4.594 18 H 0.044 0.956 19 C -0.177 4.177 20 N -0.572 5.572 21 Si 0.770 3.230 22 H -0.174 1.174 23 H -0.204 1.204 24 H -0.165 1.165 25 H 0.101 0.899 26 H 0.106 0.894 27 H 0.124 0.876 28 H 0.094 0.906 29 H 0.114 0.886 30 H 0.066 0.934 31 H 0.149 0.851 32 H 0.112 0.888 33 H 0.141 0.859 34 H 0.130 0.870 35 H 0.093 0.907 36 H 0.239 0.761 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.153 18.491 8.740 20.566 hybrid contribution -0.636 -0.207 -0.276 0.724 sum 1.517 18.284 8.464 20.205 Atomic orbital electron populations 1.20695 0.84946 1.05111 1.04337 1.21972 0.96154 0.86295 0.92994 1.19112 0.93911 0.90222 1.30275 1.19794 0.83516 0.85080 0.71296 1.90728 1.18616 1.84731 1.49596 1.86599 1.39162 1.16457 1.84005 1.22458 0.96948 0.76811 0.98423 0.91205 1.22136 1.03047 1.02644 0.93820 1.22359 1.02033 1.01624 0.91627 1.23139 1.00198 0.95935 0.99969 1.22911 1.02130 0.99712 0.97118 1.24529 0.97829 0.91252 0.95260 1.77163 0.97895 1.14127 1.25838 1.48837 1.03490 1.07451 1.51139 1.19986 0.97107 0.74051 0.97582 1.21176 1.48349 0.98962 0.90895 0.95559 1.25826 0.93556 0.99131 0.99148 1.70026 1.46467 1.18901 1.21853 0.85696 0.80548 0.77759 0.78974 1.17449 1.20355 1.16470 0.89853 0.89357 0.87585 0.90553 0.88557 0.93419 0.85108 0.88843 0.85874 0.87046 0.90745 0.76093 0.92259 0.90616 0.91602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.15 9.57 71.24 0.68 -2.46 16 2 C 0.16 6.44 7.01 42.17 0.30 6.73 16 3 C -0.32 -11.90 6.13 -20.16 -0.12 -12.02 16 4 C 0.56 18.78 7.93 70.20 0.56 19.34 16 5 O -0.54 -19.69 14.10 19.77 0.28 -19.41 16 6 O -0.35 -9.79 9.64 -56.68 -0.55 -10.34 16 7 C 0.11 2.41 2.76 30.60 0.08 2.50 16 8 H 0.07 1.77 6.92 -2.39 -0.02 1.75 16 9 C -0.16 -2.88 9.53 71.98 0.69 -2.19 16 10 C -0.16 -2.70 5.40 -10.79 -0.06 -2.76 16 11 C -0.16 -2.20 10.18 30.59 0.31 -1.89 16 12 C -0.18 -3.29 10.16 30.60 0.31 -2.98 16 13 C 0.10 3.51 11.87 85.66 1.02 4.52 16 14 N -0.33 -14.22 12.50 -56.25 -0.70 -14.92 16 15 N -0.33 -14.72 3.56 -336.66 -1.20 -15.92 16 16 C 0.23 10.60 5.03 85.63 0.43 11.03 16 17 C -0.56 -31.09 9.94 25.60 0.25 -30.84 16 18 H 0.03 1.71 8.06 -2.91 -0.02 1.69 16 19 C 0.02 1.30 5.47 84.65 0.46 1.77 16 20 N -0.93 -56.02 13.96 21.45 0.30 -55.72 16 21 Si 0.95 39.66 27.47 68.60 1.88 41.54 16 22 H -0.25 -9.68 7.11 99.48 0.71 -8.97 16 23 H -0.28 -11.58 7.11 99.48 0.71 -10.88 16 24 H -0.24 -9.20 6.54 99.48 0.65 -8.55 16 25 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 26 H 0.09 2.69 7.04 -2.39 -0.02 2.68 16 27 H 0.11 3.31 6.50 -2.39 -0.02 3.30 16 28 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.13 1.78 8.11 -2.38 -0.02 1.76 16 32 H 0.09 1.38 8.05 -2.39 -0.02 1.37 16 33 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.22 5.92 8.06 -2.91 -0.02 5.90 16 37 H 0.06 2.67 7.20 -2.39 -0.02 2.65 16 38 H 0.08 3.03 6.44 -2.39 -0.02 3.02 16 39 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -68.99 334.64 5.92 -63.08 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: 0.99 Total: 20.95 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: 4.91 Total: -9.26 kcal Atomic # 7 Polarization: -84.96 SS G_CDS: -1.60 Total: -86.56 kcal Atomic # 8 Polarization: -29.48 SS G_CDS: -0.27 Total: -29.75 kcal Atomic # 14 Polarization: 39.66 SS G_CDS: 1.88 Total: 41.54 kcal Total: -68.99 5.92 -63.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889771129.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.040 kcal (2) G-P(sol) polarization free energy of solvation -68.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds