Wall clock time and date at job start Tue Mar 31 2020 00:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38125 * 126.29131 * 2 1 4 4 C 1.47285 * 126.43080 * 359.77001 * 3 2 1 5 5 O 1.21523 * 119.99767 * 0.02562 * 4 3 2 6 6 O 1.34757 * 119.99957 * 179.97438 * 4 3 2 7 7 C 1.45204 * 116.99684 * 179.97438 * 6 4 3 8 8 H 1.08997 * 109.47336 * 30.00489 * 7 6 4 9 9 C 1.52996 * 109.47124 * 270.00090 * 7 6 4 10 10 C 1.53004 * 109.46758 * 150.00629 * 7 6 4 11 11 C 1.52996 * 117.49825 * 8.62082 * 10 7 6 12 12 C 1.53000 * 117.49597 * 299.99856 * 10 7 6 13 13 C 1.41347 * 107.14551 * 180.02562 * 3 2 1 14 14 N 1.30434 * 108.01298 * 0.02562 * 13 3 2 15 15 N 1.34221 * 126.29684 * 180.02562 * 2 1 3 16 16 C 1.46498 * 125.74232 * 359.94959 * 15 2 1 17 17 C 1.50701 * 109.47269 * 89.99958 * 16 15 2 18 18 H 1.08005 * 119.99717 * 359.97438 * 17 16 15 19 19 C 1.37874 * 119.99917 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00068 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99813 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47054 * 60.00172 * 21 19 17 23 23 H 1.48500 * 109.47325 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47272 * 300.00391 * 21 19 17 25 25 H 1.08999 * 109.46648 * 89.97567 * 1 2 3 26 26 H 1.08998 * 109.46660 * 209.97454 * 1 2 3 27 27 H 1.08998 * 109.47115 * 329.97729 * 1 2 3 28 28 H 1.09002 * 109.47777 * 300.00561 * 9 7 6 29 29 H 1.09004 * 109.46964 * 60.00437 * 9 7 6 30 30 H 1.09003 * 109.47292 * 179.97438 * 9 7 6 31 31 H 1.08998 * 115.54729 * 154.33440 * 10 7 6 32 32 H 1.08998 * 117.50374 * 359.97438 * 11 10 7 33 33 H 1.08996 * 117.49588 * 145.02424 * 11 10 7 34 34 H 1.09009 * 117.49705 * 214.98412 * 12 10 7 35 35 H 1.09003 * 117.50186 * 0.02562 * 12 10 7 36 36 H 1.07997 * 125.99729 * 179.97438 * 13 3 2 37 37 H 1.09001 * 109.46702 * 209.99804 * 16 15 2 38 38 H 1.08996 * 109.47376 * 329.99388 * 16 15 2 39 39 H 0.97001 * 119.99780 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.1133 0.0000 4 6 1.8872 2.5197 -0.0048 5 8 0.7018 2.7873 -0.0088 6 8 2.8014 3.5097 -0.0036 7 6 2.2981 4.8717 -0.0091 8 1 1.3354 4.9054 0.5009 9 6 2.1271 5.3464 -1.4535 10 6 3.2904 5.7849 0.7137 11 6 4.6455 5.1895 1.1009 12 6 3.5983 5.4735 2.1797 13 6 3.6599 0.6497 -0.0006 14 7 3.6341 -0.6544 -0.0015 15 7 2.3016 -1.0818 -0.0005 16 6 1.8498 -2.4754 -0.0001 17 6 1.6939 -2.9533 -1.4207 18 1 1.9094 -2.2856 -2.2418 19 6 1.2762 -4.2430 -1.6722 20 7 1.0134 -5.0559 -0.6723 21 14 1.0823 -4.8352 -3.4332 22 1 2.3874 -4.7376 -4.1349 23 1 0.6245 -6.2479 -3.4328 24 1 0.0803 -3.9909 -4.1319 25 1 -0.3632 0.0004 -1.0277 26 1 -0.3632 -0.8902 0.5134 27 1 -0.3633 0.8898 0.5142 28 1 3.0898 5.3127 -1.9635 29 1 1.4202 4.6958 -1.9684 30 1 1.7488 6.3687 -1.4576 31 1 3.2674 6.8332 0.4159 32 1 4.8301 4.1471 0.8412 33 1 5.5145 5.8461 1.0578 34 1 3.7783 6.3170 2.8463 35 1 3.0943 4.6178 2.6291 36 1 4.5461 1.2670 -0.0012 37 1 2.5848 -3.0953 0.5133 38 1 0.8916 -2.5466 0.5145 39 1 0.7192 -5.9631 -0.8493 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889771130.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:14 Heat of formation + Delta-G solvation = -3.176405 kcal Electronic energy + Delta-G solvation = -21446.694125 eV Core-core repulsion = 18163.512133 eV Total energy + Delta-G solvation = -3283.181992 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -40.90656 -39.86947 -37.57522 -35.48635 -33.93423 -32.17384 -31.58895 -31.01900 -27.64238 -26.75724 -24.46621 -23.53165 -22.63842 -22.29998 -20.68839 -19.79823 -18.93703 -17.42655 -16.81361 -16.44556 -15.91553 -15.37334 -15.12581 -14.60241 -14.42945 -14.27649 -13.52753 -13.32294 -12.93265 -12.69602 -12.52325 -12.46994 -12.15085 -11.98867 -11.82695 -11.56324 -11.55055 -11.29061 -11.16415 -10.89394 -10.83284 -10.43019 -10.31343 -10.30253 -10.00934 -9.98833 -9.74358 -8.73167 -8.65527 -8.07162 -6.36184 -4.44423 1.92973 2.71270 2.82205 3.18756 3.22896 3.25706 3.40118 3.66713 3.70171 4.22296 4.43864 4.73571 4.83637 4.97356 5.02184 5.06552 5.15115 5.21899 5.32886 5.41067 5.55629 5.58698 5.70008 5.75922 5.79381 5.93896 6.02101 6.04822 6.07658 6.15064 6.36160 6.41709 6.72974 6.82546 6.86708 7.12947 7.51242 7.70797 7.73853 8.20874 8.35285 8.60565 9.22693 10.72039 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.031469 B = 0.003753 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.552630 B = 7458.415627 C = 7654.647790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.171 3.829 3 C -0.319 4.319 4 C 0.550 3.450 5 O -0.530 6.530 6 O -0.349 6.349 7 C 0.117 3.883 8 H 0.087 0.913 9 C -0.165 4.165 10 C -0.160 4.160 11 C -0.164 4.164 12 C -0.178 4.178 13 C 0.080 3.920 14 N -0.297 5.297 15 N -0.311 5.311 16 C 0.251 3.749 17 C -0.542 4.542 18 H 0.065 0.935 19 C 0.068 3.932 20 N -0.889 5.889 21 Si 0.909 3.091 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.273 1.273 25 H 0.086 0.914 26 H 0.076 0.924 27 H 0.092 0.908 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.118 0.882 32 H 0.108 0.892 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.184 0.816 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.505 18.331 2.877 18.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.033 3.967 3 C -0.332 4.332 4 C 0.398 3.602 5 O -0.421 6.421 6 O -0.266 6.266 7 C 0.062 3.938 8 H 0.105 0.895 9 C -0.222 4.222 10 C -0.178 4.178 11 C -0.201 4.201 12 C -0.215 4.215 13 C -0.107 4.107 14 N -0.116 5.116 15 N -0.087 5.087 16 C 0.134 3.866 17 C -0.581 4.581 18 H 0.083 0.917 19 C -0.136 4.136 20 N -0.527 5.527 21 Si 0.735 3.265 22 H -0.198 1.198 23 H -0.208 1.208 24 H -0.198 1.198 25 H 0.105 0.895 26 H 0.095 0.905 27 H 0.111 0.889 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.136 0.864 32 H 0.127 0.873 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.201 0.799 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.794 16.966 2.932 17.442 hybrid contribution -0.583 0.395 -0.974 1.202 sum 2.211 17.360 1.958 17.610 Atomic orbital electron populations 1.20615 0.86590 1.03980 1.04159 1.21456 0.94966 0.86478 0.93766 1.18848 0.93736 0.89384 1.31239 1.20058 0.83507 0.85073 0.71581 1.90742 1.18002 1.84461 1.48923 1.86590 1.39703 1.15549 1.84766 1.22004 0.97074 0.78086 0.96662 0.89522 1.22138 1.02849 1.01661 0.95556 1.22425 0.98700 0.99056 0.97625 1.22915 0.91729 1.03059 1.02391 1.22969 1.03989 1.03432 0.91133 1.23900 0.96617 0.92122 0.98089 1.77217 0.98251 1.12340 1.23813 1.49421 1.02618 1.08290 1.48334 1.19897 0.96506 0.70666 0.99555 1.21204 1.47733 0.98209 0.90916 0.91654 1.24918 0.94367 0.95940 0.98358 1.69901 1.44300 1.07245 1.31212 0.86367 0.78919 0.77761 0.83407 1.19848 1.20841 1.19838 0.89546 0.90489 0.88896 0.91537 0.91736 0.91098 0.86368 0.87344 0.89028 0.88812 0.88719 0.79930 0.92318 0.92460 0.92001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.68 9.56 36.01 0.34 -1.33 16 2 C 0.17 3.47 7.01 -81.59 -0.57 2.89 16 3 C -0.32 -5.99 6.13 -105.08 -0.64 -6.63 16 4 C 0.55 9.47 7.93 34.41 0.27 9.74 16 5 O -0.53 -9.77 14.10 -19.28 -0.27 -10.04 16 6 O -0.35 -5.05 8.08 -40.65 -0.33 -5.38 16 7 C 0.12 1.39 2.92 -26.73 -0.08 1.31 16 8 H 0.09 1.12 7.16 -51.93 -0.37 0.74 16 9 C -0.16 -1.73 9.53 37.16 0.35 -1.37 16 10 C -0.16 -1.53 5.71 -90.62 -0.52 -2.04 16 11 C -0.16 -1.56 9.88 -26.73 -0.26 -1.83 16 12 C -0.18 -1.68 10.19 -26.73 -0.27 -1.96 16 13 C 0.08 1.46 11.87 -16.96 -0.20 1.26 16 14 N -0.30 -6.45 12.50 30.87 0.39 -6.07 16 15 N -0.31 -6.99 3.56 -57.76 -0.21 -7.20 16 16 C 0.25 6.17 5.96 -5.19 -0.03 6.14 16 17 C -0.54 -14.49 9.39 -34.44 -0.32 -14.81 16 18 H 0.07 1.79 7.81 -52.48 -0.41 1.38 16 19 C 0.07 1.81 5.46 -17.82 -0.10 1.72 16 20 N -0.89 -24.38 13.29 55.43 0.74 -23.64 16 21 Si 0.91 20.65 29.54 -169.99 -5.02 15.63 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 25 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 26 H 0.08 1.31 7.05 -51.93 -0.37 0.94 16 27 H 0.09 1.54 6.51 -51.93 -0.34 1.20 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.12 0.90 8.11 -51.93 -0.42 0.48 16 32 H 0.11 1.18 7.04 -51.93 -0.37 0.81 16 33 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.09 0.72 8.14 -51.92 -0.42 0.30 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.18 2.62 8.06 -52.49 -0.42 2.20 16 37 H 0.06 1.53 8.14 -51.93 -0.42 1.11 16 38 H 0.06 1.39 7.01 -51.93 -0.36 1.03 16 39 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 336.13 15.07 5.07 5.07 Total: -1.00 -29.14 336.13 -7.25 -36.39 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -5.58 Total: 2.15 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -2.03 Total: -6.91 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: 0.92 Total: -36.91 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -0.60 Total: -15.42 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.14 -7.25 -36.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889771130.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.209 kcal (2) G-P(sol) polarization free energy of solvation -29.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds