Wall clock time and date at job start Tue Mar 31 2020 00:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38125 * 126.29131 * 2 1 4 4 C 1.47285 * 126.43080 * 359.77001 * 3 2 1 5 5 O 1.21523 * 119.99767 * 0.02562 * 4 3 2 6 6 O 1.34757 * 119.99957 * 179.97438 * 4 3 2 7 7 C 1.45204 * 116.99684 * 179.97438 * 6 4 3 8 8 H 1.08997 * 109.47336 * 30.00489 * 7 6 4 9 9 C 1.52996 * 109.47124 * 270.00090 * 7 6 4 10 10 C 1.53004 * 109.46758 * 150.00629 * 7 6 4 11 11 C 1.52996 * 117.49825 * 8.62082 * 10 7 6 12 12 C 1.53000 * 117.49597 * 299.99856 * 10 7 6 13 13 C 1.41347 * 107.14551 * 180.02562 * 3 2 1 14 14 N 1.30434 * 108.01298 * 0.02562 * 13 3 2 15 15 N 1.34221 * 126.29684 * 180.02562 * 2 1 3 16 16 C 1.46498 * 125.74232 * 359.94959 * 15 2 1 17 17 C 1.50701 * 109.47269 * 89.99958 * 16 15 2 18 18 H 1.08005 * 119.99717 * 359.97438 * 17 16 15 19 19 C 1.37874 * 119.99917 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00068 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99813 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47054 * 60.00172 * 21 19 17 23 23 H 1.48500 * 109.47325 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47272 * 300.00391 * 21 19 17 25 25 H 1.08999 * 109.46648 * 89.97567 * 1 2 3 26 26 H 1.08998 * 109.46660 * 209.97454 * 1 2 3 27 27 H 1.08998 * 109.47115 * 329.97729 * 1 2 3 28 28 H 1.09002 * 109.47777 * 300.00561 * 9 7 6 29 29 H 1.09004 * 109.46964 * 60.00437 * 9 7 6 30 30 H 1.09003 * 109.47292 * 179.97438 * 9 7 6 31 31 H 1.08998 * 115.54729 * 154.33440 * 10 7 6 32 32 H 1.08998 * 117.50374 * 359.97438 * 11 10 7 33 33 H 1.08996 * 117.49588 * 145.02424 * 11 10 7 34 34 H 1.09009 * 117.49705 * 214.98412 * 12 10 7 35 35 H 1.09003 * 117.50186 * 0.02562 * 12 10 7 36 36 H 1.07997 * 125.99729 * 179.97438 * 13 3 2 37 37 H 1.09001 * 109.46702 * 209.99804 * 16 15 2 38 38 H 1.08996 * 109.47376 * 329.99388 * 16 15 2 39 39 H 0.97001 * 119.99780 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.1133 0.0000 4 6 1.8872 2.5197 -0.0048 5 8 0.7018 2.7873 -0.0088 6 8 2.8014 3.5097 -0.0036 7 6 2.2981 4.8717 -0.0091 8 1 1.3354 4.9054 0.5009 9 6 2.1271 5.3464 -1.4535 10 6 3.2904 5.7849 0.7137 11 6 4.6455 5.1895 1.1009 12 6 3.5983 5.4735 2.1797 13 6 3.6599 0.6497 -0.0006 14 7 3.6341 -0.6544 -0.0015 15 7 2.3016 -1.0818 -0.0005 16 6 1.8498 -2.4754 -0.0001 17 6 1.6939 -2.9533 -1.4207 18 1 1.9094 -2.2856 -2.2418 19 6 1.2762 -4.2430 -1.6722 20 7 1.0134 -5.0559 -0.6723 21 14 1.0823 -4.8352 -3.4332 22 1 2.3874 -4.7376 -4.1349 23 1 0.6245 -6.2479 -3.4328 24 1 0.0803 -3.9909 -4.1319 25 1 -0.3632 0.0004 -1.0277 26 1 -0.3632 -0.8902 0.5134 27 1 -0.3633 0.8898 0.5142 28 1 3.0898 5.3127 -1.9635 29 1 1.4202 4.6958 -1.9684 30 1 1.7488 6.3687 -1.4576 31 1 3.2674 6.8332 0.4159 32 1 4.8301 4.1471 0.8412 33 1 5.5145 5.8461 1.0578 34 1 3.7783 6.3170 2.8463 35 1 3.0943 4.6178 2.6291 36 1 4.5461 1.2670 -0.0012 37 1 2.5848 -3.0953 0.5133 38 1 0.8916 -2.5466 0.5145 39 1 0.7192 -5.9631 -0.8493 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889771130.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:12 Heat of formation + Delta-G solvation = -17.923947 kcal Electronic energy + Delta-G solvation = -21447.333626 eV Core-core repulsion = 18163.512133 eV Total energy + Delta-G solvation = -3283.821493 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.44101 -41.13110 -38.59104 -36.60899 -35.83989 -33.92055 -32.95318 -32.20310 -29.38979 -28.35875 -25.75368 -25.05694 -23.86509 -23.16417 -22.00753 -20.88165 -20.50743 -18.93559 -18.72844 -17.61044 -17.14815 -16.88214 -16.31176 -16.24012 -15.79920 -15.56057 -14.99004 -14.58283 -14.36144 -14.12888 -13.79826 -13.73789 -13.61495 -13.45293 -13.15880 -13.01852 -12.85549 -12.69403 -12.34437 -12.30284 -12.13556 -11.91847 -11.89118 -11.76224 -11.29943 -11.08170 -10.78578 -10.76532 -10.34368 -9.66994 -8.38967 -6.55425 0.42972 1.18208 1.38023 1.39326 1.42835 1.50407 1.92317 2.24421 2.32348 2.91692 2.93923 3.63616 3.64826 3.72605 3.94318 3.95103 4.05879 4.14256 4.25186 4.36443 4.44461 4.54865 4.57830 4.71440 4.79907 4.85553 4.88814 4.90880 5.02020 5.05976 5.10165 5.21442 5.28629 5.39910 5.47485 5.51792 5.61907 5.72601 5.95686 6.52414 6.71769 6.92593 7.15795 8.68969 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.031469 B = 0.003753 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.552630 B = 7458.415627 C = 7654.647790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.159 3.841 3 C -0.322 4.322 4 C 0.556 3.444 5 O -0.544 6.544 6 O -0.344 6.344 7 C 0.108 3.892 8 H 0.075 0.925 9 C -0.161 4.161 10 C -0.156 4.156 11 C -0.166 4.166 12 C -0.182 4.182 13 C 0.097 3.903 14 N -0.334 5.334 15 N -0.333 5.333 16 C 0.266 3.734 17 C -0.559 4.559 18 H 0.053 0.947 19 C 0.026 3.974 20 N -0.916 5.916 21 Si 0.971 3.029 22 H -0.274 1.274 23 H -0.273 1.273 24 H -0.266 1.266 25 H 0.088 0.912 26 H 0.077 0.923 27 H 0.103 0.897 28 H 0.072 0.928 29 H 0.043 0.957 30 H 0.098 0.902 31 H 0.146 0.854 32 H 0.092 0.908 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.075 0.925 36 H 0.222 0.778 37 H 0.034 0.966 38 H 0.055 0.945 39 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.919 20.433 2.150 20.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.022 3.978 3 C -0.335 4.335 4 C 0.404 3.596 5 O -0.436 6.436 6 O -0.261 6.261 7 C 0.053 3.947 8 H 0.093 0.907 9 C -0.218 4.218 10 C -0.174 4.174 11 C -0.203 4.203 12 C -0.218 4.218 13 C -0.090 4.090 14 N -0.153 5.153 15 N -0.109 5.109 16 C 0.148 3.852 17 C -0.597 4.597 18 H 0.071 0.929 19 C -0.176 4.176 20 N -0.553 5.553 21 Si 0.795 3.205 22 H -0.199 1.199 23 H -0.198 1.198 24 H -0.191 1.191 25 H 0.107 0.893 26 H 0.096 0.904 27 H 0.122 0.878 28 H 0.091 0.909 29 H 0.062 0.938 30 H 0.116 0.884 31 H 0.164 0.836 32 H 0.110 0.890 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.094 0.906 36 H 0.238 0.762 37 H 0.052 0.948 38 H 0.073 0.927 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.213 19.094 2.214 19.489 hybrid contribution -0.672 -0.113 -0.696 0.974 sum 2.542 18.981 1.518 19.211 Atomic orbital electron populations 1.20642 0.85183 1.04522 1.04426 1.21957 0.96082 0.86374 0.93344 1.19085 0.93817 0.90140 1.30479 1.19773 0.83506 0.85036 0.71289 1.90732 1.18653 1.84725 1.49525 1.86576 1.38944 1.16440 1.84108 1.22343 0.97449 0.76877 0.97992 0.90684 1.22136 1.02787 1.02708 0.94182 1.22507 0.97919 0.99685 0.97305 1.22964 0.92452 1.02640 1.02222 1.23015 1.03823 1.03543 0.91463 1.24508 0.97746 0.91253 0.95483 1.77171 0.98197 1.14126 1.25841 1.49180 1.03368 1.07889 1.50475 1.19453 0.95555 0.71897 0.98334 1.21360 1.48225 0.98575 0.91492 0.92908 1.25710 0.93749 0.95873 1.02267 1.69982 1.44630 1.07642 1.33090 0.85408 0.78828 0.77704 0.78610 1.19894 1.19761 1.19071 0.89305 0.90374 0.87811 0.90887 0.93775 0.88368 0.83615 0.88967 0.86969 0.86763 0.90623 0.76162 0.94796 0.92684 0.91590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.17 9.56 71.24 0.68 -2.49 16 2 C 0.16 6.49 7.01 42.17 0.30 6.79 16 3 C -0.32 -11.95 6.13 -20.16 -0.12 -12.08 16 4 C 0.56 18.68 7.93 70.20 0.56 19.24 16 5 O -0.54 -19.69 14.10 19.76 0.28 -19.41 16 6 O -0.34 -9.47 8.08 -56.67 -0.46 -9.93 16 7 C 0.11 2.36 2.92 30.59 0.09 2.45 16 8 H 0.08 1.84 7.16 -2.39 -0.02 1.82 16 9 C -0.16 -3.02 9.53 71.98 0.69 -2.33 16 10 C -0.16 -2.53 5.71 -10.79 -0.06 -2.60 16 11 C -0.17 -2.73 9.88 30.59 0.30 -2.43 16 12 C -0.18 -3.03 10.19 30.59 0.31 -2.71 16 13 C 0.10 3.48 11.87 85.67 1.02 4.49 16 14 N -0.33 -14.67 12.50 -56.24 -0.70 -15.37 16 15 N -0.33 -15.34 3.56 -336.66 -1.20 -16.54 16 16 C 0.27 13.56 5.96 85.63 0.51 14.07 16 17 C -0.56 -30.45 9.39 25.60 0.24 -30.21 16 18 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 19 C 0.03 1.37 5.46 84.65 0.46 1.84 16 20 N -0.92 -50.70 13.29 21.45 0.28 -50.42 16 21 Si 0.97 42.21 29.54 68.60 2.03 44.23 16 22 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 23 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 24 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 25 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 26 H 0.08 2.71 7.05 -2.39 -0.02 2.69 16 27 H 0.10 3.41 6.51 -2.39 -0.02 3.39 16 28 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.15 1.60 8.11 -2.39 -0.02 1.58 16 32 H 0.09 1.83 7.04 -2.39 -0.02 1.82 16 33 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.11 1.43 8.14 -2.38 -0.02 1.41 16 35 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.22 5.87 8.06 -2.91 -0.02 5.84 16 37 H 0.03 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.06 2.78 7.01 -2.39 -0.02 2.76 16 39 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -62.84 336.13 6.24 -56.60 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: 1.05 Total: 16.81 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: 4.97 Total: -5.98 kcal Atomic # 7 Polarization: -80.71 SS G_CDS: -1.62 Total: -82.32 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -0.18 Total: -29.34 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.23 kcal Total: -62.84 6.24 -56.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889771130.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.675 kcal (2) G-P(sol) polarization free energy of solvation -62.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds