Wall clock time and date at job start Tue Mar 31 2020 00:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34685 * 117.00346 * 2 1 4 4 O 1.21430 * 119.99449 * 0.02562 * 3 2 1 5 5 C 1.48038 * 119.99856 * 179.97438 * 3 2 1 6 6 N 1.32901 * 119.68596 * 6.12993 * 5 3 2 7 7 C 1.32047 * 121.52780 * 180.30938 * 6 5 3 8 8 N 1.38967 * 119.63312 * 179.67648 * 7 6 5 9 9 C 1.46498 * 119.99976 * 179.97438 * 8 7 6 10 10 C 1.53001 * 109.47301 * 180.02562 * 9 8 7 11 11 C 1.53003 * 109.47065 * 180.02562 * 10 9 8 12 12 C 1.50703 * 109.47215 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99612 * 0.02562 * 12 11 10 14 14 C 1.37873 * 120.00164 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99907 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99952 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46899 * 90.00445 * 16 14 12 18 18 H 1.48500 * 109.47224 * 210.00122 * 16 14 12 19 19 H 1.48498 * 109.47428 * 330.00499 * 16 14 12 20 20 C 1.39515 * 120.72958 * 359.65986 * 7 6 5 21 21 C 1.38250 * 119.29574 * 0.02562 * 20 7 6 22 22 C 1.38828 * 118.58914 * 359.97438 * 21 20 7 23 23 C 1.50701 * 120.39309 * 179.97438 * 22 21 20 24 24 H 1.09000 * 109.47502 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47442 * 300.00078 * 1 2 3 26 26 H 1.09004 * 109.46935 * 60.00070 * 1 2 3 27 27 H 0.97002 * 120.00634 * 359.97438 * 8 7 6 28 28 H 1.09000 * 109.47397 * 300.00573 * 9 8 7 29 29 H 1.09001 * 109.46902 * 60.00367 * 9 8 7 30 30 H 1.08996 * 109.46797 * 300.00011 * 10 9 8 31 31 H 1.08994 * 109.46896 * 60.00455 * 10 9 8 32 32 H 1.09000 * 109.47390 * 300.00085 * 11 10 9 33 33 H 1.09001 * 109.47145 * 60.00023 * 11 10 9 34 34 H 0.97004 * 119.99967 * 179.97438 * 15 14 12 35 35 H 1.08003 * 120.35487 * 180.02562 * 20 7 6 36 36 H 1.08008 * 120.70754 * 179.97438 * 21 20 7 37 37 H 1.09002 * 109.46852 * 96.78142 * 23 22 21 38 38 H 1.09002 * 109.47225 * 336.78488 * 23 22 21 39 39 H 1.08997 * 109.47771 * 216.77663 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2000 0.0000 4 8 1.4021 2.2184 0.0005 5 6 3.5419 1.2774 0.0006 6 7 4.2592 0.1653 -0.1222 7 6 5.5794 0.1915 -0.1202 8 7 6.2904 -0.9961 -0.2444 9 6 7.7552 -0.9763 -0.2437 10 6 8.2846 -2.4040 -0.3934 11 6 9.8145 -2.3833 -0.3920 12 6 10.3360 -3.7896 -0.5388 13 1 9.6453 -4.6154 -0.6249 14 6 11.6948 -4.0218 -0.5642 15 7 12.5359 -3.0162 -0.4598 16 14 12.3412 -5.7650 -0.7454 17 1 12.5112 -6.0826 -2.1861 18 1 13.6507 -5.8817 -0.0550 19 1 11.3756 -6.7166 -0.1394 20 6 6.2683 1.3982 0.0050 21 6 5.5539 2.5754 0.1283 22 6 4.1670 2.5145 0.1227 23 6 3.3481 3.7726 0.2551 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 5.8168 -1.8381 -0.3316 28 1 8.1108 -0.3682 -1.0754 29 1 8.1124 -0.5525 0.6949 30 1 7.9291 -3.0123 0.4382 31 1 7.9275 -2.8273 -1.3321 32 1 10.1705 -1.7748 -1.2233 33 1 10.1713 -1.9601 0.5470 34 1 13.4919 -3.1796 -0.4773 35 1 7.3482 1.4126 0.0055 36 1 6.0640 3.5223 0.2269 37 1 3.0482 4.1168 -0.7348 38 1 3.9437 4.5442 0.7430 39 1 2.4600 3.5670 0.8526 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892327686.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:13:19 Heat of formation + Delta-G solvation = -56.402058 kcal Electronic energy + Delta-G solvation = -20457.881461 eV Core-core repulsion = 17172.391432 eV Total energy + Delta-G solvation = -3285.490029 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.04031 -39.78564 -36.97194 -36.29634 -33.96812 -33.11241 -31.93291 -30.61296 -28.46440 -27.23387 -25.83989 -24.59335 -23.13653 -22.19786 -20.88978 -20.43449 -18.28723 -17.61430 -16.83191 -16.59129 -16.30770 -15.81632 -15.13141 -14.96095 -14.55051 -14.35544 -14.21636 -13.90065 -13.35267 -13.29426 -12.97145 -12.56104 -12.44244 -12.28803 -12.04069 -11.97268 -11.85490 -10.97921 -10.96254 -10.78469 -10.63487 -10.52439 -10.16756 -9.91048 -9.72245 -9.60214 -9.52737 -9.19337 -8.42331 -7.61748 -6.07479 -4.10261 0.50061 1.32991 2.33687 2.43671 3.20987 3.28140 3.34788 3.38144 3.79157 4.28239 4.40707 4.65530 4.80347 4.88157 4.90833 4.96121 5.06555 5.25644 5.28927 5.39360 5.46595 5.60083 5.60520 5.64172 5.86509 5.91675 5.97550 6.12085 6.14836 6.43600 6.49068 6.59215 6.88882 7.01799 7.45102 7.55814 7.67561 7.69127 7.90856 8.08577 8.32630 8.96160 9.54496 11.03857 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.032118 B = 0.002741 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.574551 B =10212.017027 C =11045.763489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.335 6.335 3 C 0.525 3.475 4 O -0.496 6.496 5 C 0.130 3.870 6 N -0.505 5.505 7 C 0.401 3.599 8 N -0.716 5.716 9 C 0.122 3.878 10 C -0.121 4.121 11 C 0.025 3.975 12 C -0.523 4.523 13 H 0.056 0.944 14 C 0.057 3.943 15 N -0.895 5.895 16 Si 0.893 3.107 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.274 1.274 20 C -0.197 4.197 21 C -0.044 4.044 22 C -0.137 4.137 23 C -0.107 4.107 24 H 0.102 0.898 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.406 0.594 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.019 0.981 33 H 0.019 0.981 34 H 0.261 0.739 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.489 11.493 1.526 22.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.250 6.250 3 C 0.369 3.631 4 O -0.384 6.384 5 C -0.006 4.006 6 N -0.225 5.225 7 C 0.161 3.839 8 N -0.347 5.347 9 C -0.001 4.001 10 C -0.159 4.159 11 C -0.013 4.013 12 C -0.561 4.561 13 H 0.074 0.926 14 C -0.144 4.144 15 N -0.534 5.534 16 Si 0.721 3.279 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.222 4.222 21 C -0.070 4.070 22 C -0.143 4.143 23 C -0.164 4.164 24 H 0.121 0.879 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.242 0.758 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.037 0.963 33 H 0.037 0.963 34 H 0.071 0.929 35 H 0.161 0.839 36 H 0.161 0.839 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -19.763 11.024 1.450 22.676 hybrid contribution 0.629 -0.559 -0.103 0.848 sum -19.134 10.465 1.348 21.851 Atomic orbital electron populations 1.23320 0.76388 1.03887 1.02433 1.86717 1.22942 1.31981 1.83314 1.20938 0.88054 0.81540 0.72612 1.90789 1.66179 1.35630 1.45850 1.19337 0.89754 0.89097 1.02435 1.67061 1.06269 1.30319 1.18856 1.18364 0.87168 0.87458 0.90900 1.44898 1.06388 1.05555 1.77875 1.21762 0.76547 1.00760 1.01073 1.21872 1.00563 0.92230 1.01212 1.19029 0.87175 0.97496 0.97559 1.21201 0.91617 0.92996 1.50301 0.92598 1.25017 0.97115 0.97071 0.95204 1.69955 1.02468 1.30586 1.50391 0.86575 0.78322 0.84794 0.78211 1.20625 1.21181 1.19846 1.21839 1.01878 0.91715 1.06809 1.21237 0.92305 0.98516 0.94932 1.20475 0.94570 0.95163 1.04096 1.20908 0.99680 0.92852 1.02947 0.87935 0.91868 0.91843 0.75837 0.91998 0.91982 0.92484 0.92493 0.96287 0.96273 0.92900 0.83885 0.83949 0.91100 0.92218 0.89365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.34 16 2 O -0.33 -4.22 10.39 -40.45 -0.42 -4.64 16 3 C 0.52 7.05 7.88 34.75 0.27 7.33 16 4 O -0.50 -6.70 13.07 -19.21 -0.25 -6.95 16 5 C 0.13 1.83 6.74 -83.05 -0.56 1.27 16 6 N -0.50 -7.67 10.16 -9.01 -0.09 -7.76 16 7 C 0.40 5.81 7.65 -155.21 -1.19 4.62 16 8 N -0.72 -10.34 5.73 -60.41 -0.35 -10.69 16 9 C 0.12 1.87 4.89 -4.04 -0.02 1.85 16 10 C -0.12 -2.25 5.27 -26.73 -0.14 -2.39 16 11 C 0.03 0.60 4.97 -27.88 -0.14 0.47 16 12 C -0.52 -14.28 9.11 -34.44 -0.31 -14.59 16 13 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 14 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 15 N -0.89 -26.16 13.29 55.43 0.74 -25.43 16 16 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 20 C -0.20 -2.45 9.33 -39.10 -0.36 -2.81 16 21 C -0.04 -0.48 9.81 -39.36 -0.39 -0.87 16 22 C -0.14 -1.64 5.93 -104.07 -0.62 -2.26 16 23 C -0.11 -1.07 8.74 36.01 0.31 -0.75 16 24 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.41 5.70 8.60 -40.82 -0.35 5.35 16 28 H 0.06 0.93 7.92 -51.93 -0.41 0.52 16 29 H 0.06 0.93 7.92 -51.93 -0.41 0.52 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.14 1.60 6.70 -52.48 -0.35 1.25 16 36 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.47 8.05 -51.93 -0.42 0.05 16 39 H 0.09 0.98 5.82 -51.93 -0.30 0.67 16 LS Contribution 334.08 15.07 5.03 5.03 Total: -1.00 -30.97 334.08 -8.12 -39.09 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -5.59 Total: 0.48 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -2.17 Total: -5.30 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: 0.30 Total: -43.88 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: -0.67 Total: -11.59 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.97 -8.12 -39.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892327686.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.315 kcal (2) G-P(sol) polarization free energy of solvation -30.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds