Wall clock time and date at job start Tue Mar 31 2020 00:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34685 * 117.00346 * 2 1 4 4 O 1.21430 * 119.99449 * 0.02562 * 3 2 1 5 5 C 1.48038 * 119.99856 * 179.97438 * 3 2 1 6 6 N 1.32901 * 119.68596 * 6.12993 * 5 3 2 7 7 C 1.32047 * 121.52780 * 180.30938 * 6 5 3 8 8 N 1.38967 * 119.63312 * 179.67648 * 7 6 5 9 9 C 1.46498 * 119.99976 * 179.97438 * 8 7 6 10 10 C 1.53001 * 109.47301 * 180.02562 * 9 8 7 11 11 C 1.53003 * 109.47065 * 180.02562 * 10 9 8 12 12 C 1.50703 * 109.47215 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99612 * 0.02562 * 12 11 10 14 14 C 1.37873 * 120.00164 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99907 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99952 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46899 * 90.00445 * 16 14 12 18 18 H 1.48500 * 109.47224 * 210.00122 * 16 14 12 19 19 H 1.48498 * 109.47428 * 330.00499 * 16 14 12 20 20 C 1.39515 * 120.72958 * 359.65986 * 7 6 5 21 21 C 1.38250 * 119.29574 * 0.02562 * 20 7 6 22 22 C 1.38828 * 118.58914 * 359.97438 * 21 20 7 23 23 C 1.50701 * 120.39309 * 179.97438 * 22 21 20 24 24 H 1.09000 * 109.47502 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47442 * 300.00078 * 1 2 3 26 26 H 1.09004 * 109.46935 * 60.00070 * 1 2 3 27 27 H 0.97002 * 120.00634 * 359.97438 * 8 7 6 28 28 H 1.09000 * 109.47397 * 300.00573 * 9 8 7 29 29 H 1.09001 * 109.46902 * 60.00367 * 9 8 7 30 30 H 1.08996 * 109.46797 * 300.00011 * 10 9 8 31 31 H 1.08994 * 109.46896 * 60.00455 * 10 9 8 32 32 H 1.09000 * 109.47390 * 300.00085 * 11 10 9 33 33 H 1.09001 * 109.47145 * 60.00023 * 11 10 9 34 34 H 0.97004 * 119.99967 * 179.97438 * 15 14 12 35 35 H 1.08003 * 120.35487 * 180.02562 * 20 7 6 36 36 H 1.08008 * 120.70754 * 179.97438 * 21 20 7 37 37 H 1.09002 * 109.46852 * 96.78142 * 23 22 21 38 38 H 1.09002 * 109.47225 * 336.78488 * 23 22 21 39 39 H 1.08997 * 109.47771 * 216.77663 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2000 0.0000 4 8 1.4021 2.2184 0.0005 5 6 3.5419 1.2774 0.0006 6 7 4.2592 0.1653 -0.1222 7 6 5.5794 0.1915 -0.1202 8 7 6.2904 -0.9961 -0.2444 9 6 7.7552 -0.9763 -0.2437 10 6 8.2846 -2.4040 -0.3934 11 6 9.8145 -2.3833 -0.3920 12 6 10.3360 -3.7896 -0.5388 13 1 9.6453 -4.6154 -0.6249 14 6 11.6948 -4.0218 -0.5642 15 7 12.5359 -3.0162 -0.4598 16 14 12.3412 -5.7650 -0.7454 17 1 12.5112 -6.0826 -2.1861 18 1 13.6507 -5.8817 -0.0550 19 1 11.3756 -6.7166 -0.1394 20 6 6.2683 1.3982 0.0050 21 6 5.5539 2.5754 0.1283 22 6 4.1670 2.5145 0.1227 23 6 3.3481 3.7726 0.2551 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 5.8168 -1.8381 -0.3316 28 1 8.1108 -0.3682 -1.0754 29 1 8.1124 -0.5525 0.6949 30 1 7.9291 -3.0123 0.4382 31 1 7.9275 -2.8273 -1.3321 32 1 10.1705 -1.7748 -1.2233 33 1 10.1713 -1.9601 0.5470 34 1 13.4919 -3.1796 -0.4773 35 1 7.3482 1.4126 0.0055 36 1 6.0640 3.5223 0.2269 37 1 3.0482 4.1168 -0.7348 38 1 3.9437 4.5442 0.7430 39 1 2.4600 3.5670 0.8526 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892327686.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:13:19 Heat of formation + Delta-G solvation = -74.463938 kcal Electronic energy + Delta-G solvation = -20458.664683 eV Core-core repulsion = 17172.391432 eV Total energy + Delta-G solvation = -3286.273251 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.00404 -40.76082 -38.00973 -37.43243 -35.60018 -34.33294 -33.35754 -31.88784 -29.37146 -28.52221 -27.11277 -25.53094 -24.77904 -23.12176 -22.22744 -21.75998 -19.27178 -18.66976 -18.45937 -17.71614 -17.49373 -16.84116 -16.46486 -16.40967 -15.86446 -15.47136 -15.41297 -14.77485 -14.36392 -14.28858 -14.16390 -13.86637 -13.69142 -13.45591 -13.33966 -13.14283 -12.88113 -12.77302 -12.49441 -12.33619 -11.82601 -11.74547 -11.53455 -11.41654 -11.18615 -10.98181 -10.81463 -10.56174 -10.53777 -8.67765 -8.19717 -6.29607 -0.47914 0.38315 1.34942 1.41942 1.42161 1.53153 1.57317 2.11527 2.42609 2.79443 3.14527 3.33682 3.79060 3.90519 4.00256 4.08897 4.19515 4.25158 4.26401 4.33295 4.44225 4.59913 4.68643 4.78128 4.85595 4.93773 4.98016 5.02064 5.08549 5.17736 5.25474 5.29944 5.52288 5.61019 5.74544 5.85947 5.91109 6.25344 6.45007 6.64066 6.87290 7.04697 7.39604 8.91929 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.032118 B = 0.002741 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.574551 B =10212.017027 C =11045.763489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.352 6.352 3 C 0.522 3.478 4 O -0.504 6.504 5 C 0.104 3.896 6 N -0.527 5.527 7 C 0.383 3.617 8 N -0.719 5.719 9 C 0.138 3.862 10 C -0.106 4.106 11 C 0.028 3.972 12 C -0.544 4.544 13 H 0.059 0.941 14 C 0.002 3.998 15 N -0.931 5.931 16 Si 0.961 3.039 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.265 1.265 20 C -0.200 4.200 21 C -0.035 4.035 22 C -0.133 4.133 23 C -0.103 4.103 24 H 0.127 0.873 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.405 0.595 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.000 1.000 33 H 0.000 1.000 34 H 0.264 0.736 35 H 0.155 0.845 36 H 0.181 0.819 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.041 11.960 1.603 23.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.267 6.267 3 C 0.366 3.634 4 O -0.393 6.393 5 C -0.031 4.031 6 N -0.248 5.248 7 C 0.143 3.857 8 N -0.351 5.351 9 C 0.015 3.985 10 C -0.144 4.144 11 C -0.010 4.010 12 C -0.582 4.582 13 H 0.077 0.923 14 C -0.196 4.196 15 N -0.571 5.571 16 Si 0.786 3.214 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.189 1.189 20 C -0.225 4.225 21 C -0.060 4.060 22 C -0.139 4.139 23 C -0.160 4.160 24 H 0.145 0.855 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.241 0.759 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.018 0.982 33 H 0.018 0.982 34 H 0.072 0.928 35 H 0.173 0.827 36 H 0.198 0.802 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -20.358 11.500 1.528 23.431 hybrid contribution 0.723 -0.645 -0.119 0.976 sum -19.635 10.855 1.409 22.480 Atomic orbital electron populations 1.23631 0.74237 1.05781 1.02976 1.86693 1.25196 1.31754 1.83063 1.20970 0.88107 0.81734 0.72558 1.90774 1.66335 1.35742 1.46410 1.19649 0.90142 0.89716 1.03642 1.66963 1.06776 1.31338 1.19699 1.18555 0.87275 0.87914 0.91914 1.44685 1.05731 1.05878 1.78850 1.21432 0.77225 0.98351 1.01526 1.21582 0.96770 0.94666 1.01364 1.18914 0.90840 0.95655 0.95608 1.21689 0.92123 0.94507 1.49856 0.92295 1.25908 0.97547 1.01275 0.94912 1.70073 1.02793 1.32796 1.51462 0.85512 0.77717 0.79808 0.78408 1.19910 1.20828 1.18915 1.22076 1.02590 0.91549 1.06298 1.21662 0.91777 0.99502 0.93074 1.20837 0.95414 0.95201 1.02464 1.20910 0.99372 0.92545 1.03142 0.85456 0.91243 0.91377 0.75895 0.91556 0.91523 0.92343 0.92341 0.98204 0.98180 0.92759 0.82695 0.80190 0.90821 0.89491 0.90556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.56 113.37 1.20 1.61 16 2 O -0.35 -8.82 10.39 -55.94 -0.58 -9.40 16 3 C 0.52 13.93 7.88 70.42 0.56 14.49 16 4 O -0.50 -13.35 13.07 20.06 0.26 -13.08 16 5 C 0.10 2.86 6.74 41.80 0.28 3.14 16 6 N -0.53 -15.92 10.16 -182.42 -1.85 -17.77 16 7 C 0.38 10.81 7.65 133.27 1.02 11.83 16 8 N -0.72 -20.40 5.73 -345.04 -1.98 -22.38 16 9 C 0.14 4.15 4.89 86.38 0.42 4.57 16 10 C -0.11 -3.93 5.27 30.60 0.16 -3.77 16 11 C 0.03 1.35 4.97 29.85 0.15 1.50 16 12 C -0.54 -29.83 9.11 25.60 0.23 -29.60 16 13 H 0.06 3.11 7.74 -2.91 -0.02 3.09 16 14 C 0.00 0.09 5.46 84.65 0.46 0.55 16 15 N -0.93 -55.01 13.29 21.45 0.28 -54.72 16 16 Si 0.96 43.32 29.54 68.60 2.03 45.34 16 17 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 18 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 19 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 20 C -0.20 -4.62 9.33 22.58 0.21 -4.41 16 21 C -0.03 -0.66 9.81 22.41 0.22 -0.44 16 22 C -0.13 -2.96 5.93 -19.50 -0.12 -3.07 16 23 C -0.10 -1.83 8.74 71.24 0.62 -1.21 16 24 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 27 H 0.41 11.32 8.60 -92.71 -0.80 10.53 16 28 H 0.07 1.93 7.92 -2.39 -0.02 1.91 16 29 H 0.07 1.94 7.92 -2.39 -0.02 1.92 16 30 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 33 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 34 H 0.26 14.67 8.31 -92.71 -0.77 13.89 16 35 H 0.16 3.15 6.70 -2.91 -0.02 3.13 16 36 H 0.18 2.00 8.06 -2.91 -0.02 1.97 16 37 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.09 1.06 8.05 -2.39 -0.02 1.04 16 39 H 0.08 1.58 5.82 -2.39 -0.01 1.57 16 Total: -1.00 -66.77 334.08 3.84 -62.92 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: 0.26 Total: 13.89 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: 5.42 Total: -4.81 kcal Atomic # 7 Polarization: -91.32 SS G_CDS: -3.54 Total: -94.87 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.32 Total: -22.49 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Total: -66.77 3.84 -62.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892327686.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.542 kcal (2) G-P(sol) polarization free energy of solvation -66.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds