Wall clock time and date at job start Tue Mar 31 2020 00:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38125 * 126.29494 * 2 1 4 4 C 1.47287 * 126.42560 * 359.97438 * 3 2 1 5 5 O 1.21521 * 120.00045 * 0.02562 * 4 3 2 6 6 O 1.34756 * 119.99472 * 179.97438 * 4 3 2 7 7 C 1.45206 * 116.99549 * 179.97438 * 6 4 3 8 8 C 1.53005 * 109.46898 * 180.02562 * 7 6 4 9 9 C 1.52997 * 109.46980 * 180.02562 * 8 7 6 10 10 C 1.52996 * 117.49836 * 243.74797 * 9 8 7 11 11 C 1.53001 * 117.49821 * 175.08678 * 9 8 7 12 12 C 1.41345 * 107.14562 * 180.02562 * 3 2 1 13 13 N 1.30434 * 108.01067 * 359.75516 * 12 3 2 14 14 N 1.34222 * 126.29168 * 180.02562 * 2 1 3 15 15 C 1.46491 * 125.74900 * 359.96010 * 14 2 1 16 16 C 1.50702 * 109.46957 * 90.00099 * 15 14 2 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99942 * 179.72213 * 16 15 14 19 19 N 1.31514 * 119.99985 * 180.27663 * 18 16 15 20 20 Si 1.86800 * 119.99777 * 0.28166 * 18 16 15 21 21 H 1.48498 * 109.47109 * 89.99834 * 20 18 16 22 22 H 1.48507 * 109.46754 * 209.99574 * 20 18 16 23 23 H 1.48498 * 109.47278 * 329.99405 * 20 18 16 24 24 H 1.08997 * 109.47125 * 269.99927 * 1 2 3 25 25 H 1.08999 * 109.46901 * 29.99895 * 1 2 3 26 26 H 1.09001 * 109.46993 * 149.99452 * 1 2 3 27 27 H 1.09003 * 109.47441 * 300.00466 * 7 6 4 28 28 H 1.09005 * 109.46811 * 60.00758 * 7 6 4 29 29 H 1.09003 * 109.47077 * 300.00226 * 8 7 6 30 30 H 1.08999 * 109.46956 * 60.00120 * 8 7 6 31 31 H 1.09001 * 115.54964 * 29.41602 * 9 8 7 32 32 H 1.09002 * 117.50277 * 359.97438 * 10 9 8 33 33 H 1.09000 * 117.50301 * 145.02008 * 10 9 8 34 34 H 1.09002 * 117.49701 * 214.97324 * 11 9 8 35 35 H 1.08995 * 117.49806 * 359.97438 * 11 9 8 36 36 H 1.07995 * 125.99523 * 179.97438 * 12 3 2 37 37 H 1.09004 * 109.47166 * 330.00365 * 15 14 2 38 38 H 1.08994 * 109.47507 * 210.00071 * 15 14 2 39 39 H 0.96996 * 119.99730 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3247 1.1133 0.0000 4 6 1.8872 2.5197 -0.0005 5 8 0.7018 2.7872 -0.0006 6 8 2.8015 3.5096 0.0001 7 6 2.2982 4.8716 -0.0011 8 6 3.4747 5.8500 -0.0009 9 6 2.9444 7.2851 -0.0014 10 6 3.2632 8.1555 -1.2186 11 6 3.9679 8.4164 0.1150 12 6 3.6599 0.6496 -0.0006 13 7 3.6340 -0.6545 0.0044 14 7 2.3015 -1.0819 -0.0005 15 6 1.8498 -2.4754 -0.0003 16 6 1.6942 -2.9532 -1.4211 17 1 1.9105 -2.2857 -2.2421 18 6 1.2816 -4.2445 -1.6729 19 7 1.1510 -4.6631 -2.9127 20 14 0.9080 -5.3992 -0.2528 21 1 -0.5245 -5.2784 0.1197 22 1 1.1966 -6.7972 -0.6626 23 1 1.7547 -5.0403 0.9131 24 1 -0.3633 0.0000 1.0276 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3633 -0.8899 -0.5139 27 1 1.6912 5.0340 -0.8918 28 1 1.6894 5.0348 0.8883 29 1 4.0820 5.6877 0.8897 30 1 4.0831 5.6867 -0.8903 31 1 1.9777 7.4293 0.4811 32 1 3.8510 7.7059 -2.0189 33 1 2.5064 8.8726 -1.5367 34 1 3.6744 9.3051 0.6737 35 1 5.0189 8.1382 0.1923 36 1 4.5461 1.2668 -0.0012 37 1 0.8914 -2.5466 0.5140 38 1 2.5846 -3.0955 0.5131 39 1 0.8603 -5.5714 -3.0898 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892753665.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:54 Heat of formation + Delta-G solvation = -2.331965 kcal Electronic energy + Delta-G solvation = -20706.012216 eV Core-core repulsion = 17422.866842 eV Total energy + Delta-G solvation = -3283.145374 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.95797 -39.64506 -37.91894 -36.06484 -33.95624 -32.25795 -31.58938 -31.13995 -28.10302 -26.93176 -24.35648 -23.05353 -22.68566 -22.12220 -20.85746 -20.17055 -18.93277 -17.35187 -17.24564 -16.49498 -16.32137 -15.75349 -15.06988 -14.82399 -14.48557 -14.30722 -13.86419 -13.63140 -13.17201 -12.78987 -12.61697 -12.33770 -12.21125 -12.16255 -11.99442 -11.81573 -11.68249 -11.53396 -11.25979 -10.87659 -10.66236 -10.53716 -10.44783 -10.32246 -10.15365 -9.88143 -9.79628 -8.88066 -8.71601 -8.13174 -6.35760 -4.41141 1.86453 2.63344 2.75297 3.08219 3.15495 3.16807 3.29972 3.47884 3.63532 4.13131 4.39823 4.55367 4.60027 4.85134 4.90372 4.99663 5.07305 5.14115 5.24745 5.31183 5.32695 5.40294 5.55558 5.60215 5.68115 5.76498 5.81499 5.90919 5.93563 6.00561 6.21701 6.33720 6.41984 6.52569 6.73331 6.99686 7.14404 7.47009 8.13601 8.16176 8.27226 8.67446 9.17658 10.76336 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.043588 B = 0.002971 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.219399 B = 9422.277749 C = 9525.782739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.175 3.825 3 C -0.315 4.315 4 C 0.552 3.448 5 O -0.529 6.529 6 O -0.357 6.357 7 C 0.073 3.927 8 C -0.089 4.089 9 C -0.153 4.153 10 C -0.180 4.180 11 C -0.178 4.178 12 C 0.084 3.916 13 N -0.294 5.294 14 N -0.311 5.311 15 C 0.224 3.776 16 C -0.548 4.548 17 H 0.082 0.918 18 C 0.082 3.918 19 N -0.881 5.881 20 Si 0.873 3.127 21 H -0.269 1.269 22 H -0.278 1.278 23 H -0.263 1.263 24 H 0.080 0.920 25 H 0.097 0.903 26 H 0.087 0.913 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.107 0.893 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.187 0.813 37 H 0.049 0.951 38 H 0.057 0.943 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.342 19.726 7.391 21.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.038 3.962 3 C -0.329 4.329 4 C 0.399 3.601 5 O -0.420 6.420 6 O -0.274 6.274 7 C -0.002 4.002 8 C -0.126 4.126 9 C -0.171 4.171 10 C -0.217 4.217 11 C -0.215 4.215 12 C -0.104 4.104 13 N -0.114 5.114 14 N -0.086 5.086 15 C 0.105 3.895 16 C -0.586 4.586 17 H 0.101 0.899 18 C -0.123 4.123 19 N -0.518 5.518 20 Si 0.698 3.302 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.187 1.187 24 H 0.098 0.902 25 H 0.116 0.884 26 H 0.106 0.894 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.125 0.875 32 H 0.115 0.885 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.204 0.796 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.644 18.394 7.269 19.954 hybrid contribution -0.716 0.114 0.481 0.870 sum 1.928 18.508 7.750 20.157 Atomic orbital electron populations 1.20699 0.86505 1.05425 1.03470 1.21447 0.94980 0.86301 0.93465 1.18839 0.93765 0.89421 1.30851 1.19992 0.83383 0.84929 0.71793 1.90757 1.17996 1.84584 1.48687 1.86510 1.40021 1.15840 1.85060 1.22910 0.96599 0.78121 1.02521 1.21112 0.97148 0.90600 1.03753 1.22150 1.00397 0.91319 1.03261 1.23097 1.03628 1.03230 0.91774 1.22984 0.98100 0.99703 1.00678 1.23948 0.96735 0.92012 0.97685 1.77220 0.97727 1.12481 1.23922 1.48951 1.02899 1.07523 1.49263 1.20198 0.95842 0.73089 1.00335 1.21095 1.48363 0.99191 0.89952 0.89949 1.24795 0.94260 0.97373 0.95899 1.69862 1.45042 1.18174 1.18688 0.86903 0.79526 0.81070 0.82673 1.19471 1.20321 1.18749 0.90164 0.88412 0.89406 0.91282 0.91421 0.90359 0.90549 0.87481 0.88520 0.88777 0.88742 0.88589 0.79607 0.93293 0.92492 0.91915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.76 9.34 36.01 0.34 -1.42 16 2 C 0.18 3.49 7.01 -81.58 -0.57 2.91 16 3 C -0.32 -5.89 6.13 -105.08 -0.64 -6.53 16 4 C 0.55 9.53 7.95 34.41 0.27 9.81 16 5 O -0.53 -9.80 14.63 -19.28 -0.28 -10.08 16 6 O -0.36 -5.22 10.07 -40.64 -0.41 -5.63 16 7 C 0.07 0.83 5.43 37.16 0.20 1.04 16 8 C -0.09 -0.78 5.88 -26.73 -0.16 -0.94 16 9 C -0.15 -1.16 5.73 -90.62 -0.52 -1.68 16 10 C -0.18 -1.26 10.18 -26.69 -0.27 -1.53 16 11 C -0.18 -1.17 10.26 -26.69 -0.27 -1.45 16 12 C 0.08 1.51 11.87 -16.96 -0.20 1.31 16 13 N -0.29 -6.29 12.50 30.87 0.39 -5.91 16 14 N -0.31 -6.83 3.56 -57.76 -0.21 -7.03 16 15 C 0.22 5.14 4.85 -5.20 -0.03 5.11 16 16 C -0.55 -14.84 9.94 -34.44 -0.34 -15.18 16 17 H 0.08 2.53 8.06 -52.49 -0.42 2.10 16 18 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 19 N -0.88 -25.59 13.96 55.43 0.77 -24.81 16 20 Si 0.87 19.50 27.47 -169.99 -4.67 14.83 16 21 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.26 -5.59 6.54 56.52 0.37 -5.22 16 24 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 25 H 0.10 1.65 6.50 -51.93 -0.34 1.31 16 26 H 0.09 1.55 7.70 -51.93 -0.40 1.15 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.67 7.88 -51.93 -0.41 0.26 16 31 H 0.11 0.78 8.08 -51.93 -0.42 0.36 16 32 H 0.10 0.67 8.03 -51.93 -0.42 0.25 16 33 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.19 2.62 8.06 -52.49 -0.42 2.20 16 37 H 0.05 1.02 7.05 -51.93 -0.37 0.66 16 38 H 0.06 1.31 7.19 -51.93 -0.37 0.94 16 39 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 336.81 15.07 5.08 5.08 Total: -1.00 -30.79 336.81 -7.32 -38.11 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -5.69 Total: 1.88 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: -2.29 Total: -6.44 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: 0.95 Total: -37.75 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: -0.69 Total: -15.71 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -4.67 Total: 14.83 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.79 -7.32 -38.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892753665.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.778 kcal (2) G-P(sol) polarization free energy of solvation -30.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds