Wall clock time and date at job start Tue Mar 31 2020 00:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38125 * 126.29494 * 2 1 4 4 C 1.47287 * 126.42560 * 359.97438 * 3 2 1 5 5 O 1.21521 * 120.00045 * 0.02562 * 4 3 2 6 6 O 1.34756 * 119.99472 * 179.97438 * 4 3 2 7 7 C 1.45206 * 116.99549 * 179.97438 * 6 4 3 8 8 C 1.53005 * 109.46898 * 180.02562 * 7 6 4 9 9 C 1.52997 * 109.46980 * 180.02562 * 8 7 6 10 10 C 1.52996 * 117.49836 * 243.74797 * 9 8 7 11 11 C 1.53001 * 117.49821 * 175.08678 * 9 8 7 12 12 C 1.41345 * 107.14562 * 180.02562 * 3 2 1 13 13 N 1.30434 * 108.01067 * 359.75516 * 12 3 2 14 14 N 1.34222 * 126.29168 * 180.02562 * 2 1 3 15 15 C 1.46491 * 125.74900 * 359.96010 * 14 2 1 16 16 C 1.50702 * 109.46957 * 90.00099 * 15 14 2 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99942 * 179.72213 * 16 15 14 19 19 N 1.31514 * 119.99985 * 180.27663 * 18 16 15 20 20 Si 1.86800 * 119.99777 * 0.28166 * 18 16 15 21 21 H 1.48498 * 109.47109 * 89.99834 * 20 18 16 22 22 H 1.48507 * 109.46754 * 209.99574 * 20 18 16 23 23 H 1.48498 * 109.47278 * 329.99405 * 20 18 16 24 24 H 1.08997 * 109.47125 * 269.99927 * 1 2 3 25 25 H 1.08999 * 109.46901 * 29.99895 * 1 2 3 26 26 H 1.09001 * 109.46993 * 149.99452 * 1 2 3 27 27 H 1.09003 * 109.47441 * 300.00466 * 7 6 4 28 28 H 1.09005 * 109.46811 * 60.00758 * 7 6 4 29 29 H 1.09003 * 109.47077 * 300.00226 * 8 7 6 30 30 H 1.08999 * 109.46956 * 60.00120 * 8 7 6 31 31 H 1.09001 * 115.54964 * 29.41602 * 9 8 7 32 32 H 1.09002 * 117.50277 * 359.97438 * 10 9 8 33 33 H 1.09000 * 117.50301 * 145.02008 * 10 9 8 34 34 H 1.09002 * 117.49701 * 214.97324 * 11 9 8 35 35 H 1.08995 * 117.49806 * 359.97438 * 11 9 8 36 36 H 1.07995 * 125.99523 * 179.97438 * 12 3 2 37 37 H 1.09004 * 109.47166 * 330.00365 * 15 14 2 38 38 H 1.08994 * 109.47507 * 210.00071 * 15 14 2 39 39 H 0.96996 * 119.99730 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3247 1.1133 0.0000 4 6 1.8872 2.5197 -0.0005 5 8 0.7018 2.7872 -0.0006 6 8 2.8015 3.5096 0.0001 7 6 2.2982 4.8716 -0.0011 8 6 3.4747 5.8500 -0.0009 9 6 2.9444 7.2851 -0.0014 10 6 3.2632 8.1555 -1.2186 11 6 3.9679 8.4164 0.1150 12 6 3.6599 0.6496 -0.0006 13 7 3.6340 -0.6545 0.0044 14 7 2.3015 -1.0819 -0.0005 15 6 1.8498 -2.4754 -0.0003 16 6 1.6942 -2.9532 -1.4211 17 1 1.9105 -2.2857 -2.2421 18 6 1.2816 -4.2445 -1.6729 19 7 1.1510 -4.6631 -2.9127 20 14 0.9080 -5.3992 -0.2528 21 1 -0.5245 -5.2784 0.1197 22 1 1.1966 -6.7972 -0.6626 23 1 1.7547 -5.0403 0.9131 24 1 -0.3633 0.0000 1.0276 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3633 -0.8899 -0.5139 27 1 1.6912 5.0340 -0.8918 28 1 1.6894 5.0348 0.8883 29 1 4.0820 5.6877 0.8897 30 1 4.0831 5.6867 -0.8903 31 1 1.9777 7.4293 0.4811 32 1 3.8510 7.7059 -2.0189 33 1 2.5064 8.8726 -1.5367 34 1 3.6744 9.3051 0.6737 35 1 5.0189 8.1382 0.1923 36 1 4.5461 1.2668 -0.0012 37 1 0.8914 -2.5466 0.5140 38 1 2.5846 -3.0955 0.5131 39 1 0.8603 -5.5714 -3.0898 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892753665.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:53 Heat of formation + Delta-G solvation = -19.563146 kcal Electronic energy + Delta-G solvation = -20706.759417 eV Core-core repulsion = 17422.866842 eV Total energy + Delta-G solvation = -3283.892574 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.45826 -40.93504 -38.58522 -37.27465 -35.80202 -34.05293 -33.00854 -32.14447 -29.83150 -28.41898 -25.57990 -24.65367 -23.48547 -23.16205 -21.83184 -21.29808 -20.44148 -19.29410 -18.72902 -17.63501 -17.52267 -16.89255 -16.41175 -16.28922 -15.88904 -15.30267 -15.10827 -14.94979 -14.57641 -14.35242 -14.07440 -13.82714 -13.72647 -13.25051 -13.13173 -13.05070 -12.83168 -12.57383 -12.33895 -12.25612 -12.17081 -11.85950 -11.85107 -11.55786 -11.36263 -11.12486 -10.92035 -10.78163 -10.33478 -9.67937 -8.43427 -6.56229 0.39888 1.15032 1.32809 1.35294 1.42775 1.49046 1.89201 2.22210 2.24859 2.88815 2.91284 3.59745 3.63896 3.81014 3.94336 3.97032 4.01595 4.12610 4.17352 4.26503 4.40739 4.46832 4.52554 4.62803 4.65214 4.71071 4.83157 4.88695 5.00968 5.05099 5.07015 5.08325 5.16131 5.29814 5.34860 5.47114 5.56472 5.77324 6.16320 6.47148 6.66601 6.88557 7.07858 8.72959 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.043588 B = 0.002971 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.219399 B = 9422.277749 C = 9525.782739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.164 3.836 3 C -0.323 4.323 4 C 0.557 3.443 5 O -0.544 6.544 6 O -0.354 6.354 7 C 0.068 3.932 8 C -0.080 4.080 9 C -0.162 4.162 10 C -0.185 4.185 11 C -0.171 4.171 12 C 0.099 3.901 13 N -0.332 5.332 14 N -0.334 5.334 15 C 0.232 3.768 16 C -0.556 4.556 17 H 0.026 0.974 18 C 0.024 3.976 19 N -0.934 5.934 20 Si 0.949 3.051 21 H -0.251 1.251 22 H -0.279 1.279 23 H -0.241 1.241 24 H 0.107 0.893 25 H 0.098 0.902 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.110 0.890 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.225 0.775 37 H 0.076 0.924 38 H 0.059 0.941 39 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.340 20.816 9.533 23.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.027 3.973 3 C -0.336 4.336 4 C 0.404 3.596 5 O -0.436 6.436 6 O -0.270 6.270 7 C -0.005 4.005 8 C -0.118 4.118 9 C -0.181 4.181 10 C -0.222 4.222 11 C -0.208 4.208 12 C -0.089 4.089 13 N -0.151 5.151 14 N -0.110 5.110 15 C 0.113 3.887 16 C -0.594 4.594 17 H 0.045 0.955 18 C -0.177 4.177 19 N -0.572 5.572 20 Si 0.770 3.230 21 H -0.175 1.175 22 H -0.204 1.204 23 H -0.165 1.165 24 H 0.126 0.874 25 H 0.116 0.884 26 H 0.096 0.904 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.128 0.872 32 H 0.114 0.886 33 H 0.119 0.881 34 H 0.123 0.877 35 H 0.118 0.882 36 H 0.241 0.759 37 H 0.094 0.906 38 H 0.077 0.923 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.654 19.531 9.417 21.844 hybrid contribution -0.662 -0.027 -0.284 0.720 sum 1.992 19.504 9.133 21.628 Atomic orbital electron populations 1.20745 0.84912 1.04866 1.05050 1.21989 0.96197 0.86246 0.92842 1.19092 0.93954 0.90142 1.30395 1.19761 0.83368 0.84952 0.71489 1.90747 1.18635 1.84848 1.49364 1.86492 1.39363 1.16772 1.84402 1.23206 0.97952 0.76759 1.02620 1.21074 0.96084 0.90556 1.04050 1.22133 1.01008 0.90767 1.04159 1.23177 1.03930 1.03198 0.91863 1.23070 0.98063 0.99406 1.00219 1.24559 0.97849 0.91249 0.95205 1.77163 0.97930 1.14179 1.25859 1.48837 1.03485 1.07461 1.51198 1.19982 0.97101 0.74074 0.97548 1.21185 1.48464 0.98854 0.90901 0.95518 1.25827 0.93583 0.99189 0.99071 1.70023 1.46549 1.19010 1.21641 0.85698 0.80545 0.77744 0.78999 1.17459 1.20386 1.16474 0.87425 0.88389 0.90369 0.91606 0.90956 0.89797 0.90525 0.87190 0.88603 0.88133 0.87709 0.88173 0.75920 0.90608 0.92272 0.91606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.26 9.34 71.24 0.67 -2.59 16 2 C 0.16 6.42 7.01 42.17 0.30 6.72 16 3 C -0.32 -11.75 6.13 -20.16 -0.12 -11.87 16 4 C 0.56 18.53 7.95 70.20 0.56 19.08 16 5 O -0.54 -19.50 14.63 19.77 0.29 -19.21 16 6 O -0.35 -9.73 10.07 -56.67 -0.57 -10.30 16 7 C 0.07 1.46 5.43 71.98 0.39 1.85 16 8 C -0.08 -1.27 5.88 30.60 0.18 -1.09 16 9 C -0.16 -2.17 5.73 -10.80 -0.06 -2.23 16 10 C -0.18 -2.26 10.18 30.62 0.31 -1.95 16 11 C -0.17 -1.88 10.26 30.62 0.31 -1.57 16 12 C 0.10 3.45 11.87 85.66 1.02 4.47 16 13 N -0.33 -14.13 12.50 -56.25 -0.70 -14.84 16 14 N -0.33 -14.64 3.56 -336.67 -1.20 -15.84 16 15 C 0.23 10.56 4.85 85.64 0.42 10.97 16 16 C -0.56 -30.98 9.94 25.60 0.25 -30.72 16 17 H 0.03 1.73 8.06 -2.91 -0.02 1.71 16 18 C 0.02 1.30 5.47 84.66 0.46 1.76 16 19 N -0.93 -55.89 13.96 21.45 0.30 -55.59 16 20 Si 0.95 39.57 27.47 68.60 1.88 41.46 16 21 H -0.25 -9.67 7.11 99.48 0.71 -8.96 16 22 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 23 H -0.24 -9.18 6.54 99.48 0.65 -8.53 16 24 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 25 H 0.10 3.25 6.50 -2.39 -0.02 3.24 16 26 H 0.08 2.74 7.70 -2.39 -0.02 2.72 16 27 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 29 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.08 1.21 7.88 -2.39 -0.02 1.19 16 31 H 0.11 1.40 8.08 -2.39 -0.02 1.38 16 32 H 0.10 1.18 8.03 -2.39 -0.02 1.16 16 33 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.10 1.02 8.14 -2.39 -0.02 1.01 16 36 H 0.22 5.75 8.06 -2.91 -0.02 5.72 16 37 H 0.08 3.02 7.05 -2.38 -0.02 3.00 16 38 H 0.06 2.65 7.19 -2.39 -0.02 2.63 16 39 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -68.33 336.81 5.67 -62.66 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: 0.99 Total: 18.83 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: 4.68 Total: -7.17 kcal Atomic # 7 Polarization: -84.66 SS G_CDS: -1.60 Total: -86.26 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -0.28 Total: -29.51 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 1.88 Total: 41.46 kcal Total: -68.33 5.67 -62.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892753665.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.099 kcal (2) G-P(sol) polarization free energy of solvation -68.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds