Wall clock time and date at job start Tue Mar 31 2020 00:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50704 * 119.99891 * 2 1 4 4 C 1.50704 * 120.00351 * 180.02562 * 2 1 3 5 5 C 1.53003 * 109.47054 * 94.99995 * 4 2 1 6 6 O 1.45200 * 109.46730 * 180.02562 * 5 4 2 7 7 C 1.34756 * 116.99417 * 180.02562 * 6 5 4 8 8 O 1.21520 * 120.00292 * 359.97438 * 7 6 5 9 9 C 1.47291 * 119.99648 * 180.02562 * 7 6 5 10 10 C 1.41344 * 126.42578 * 0.03822 * 9 7 6 11 11 N 1.30427 * 108.01038 * 179.68626 * 10 9 7 12 12 N 1.39939 * 108.92113 * 0.44175 * 11 10 9 13 13 C 1.46491 * 125.74450 * 179.81281 * 12 11 10 14 14 C 1.50702 * 109.46957 * 269.69080 * 13 12 11 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 13 12 17 17 N 1.31514 * 119.99985 * 180.27663 * 16 14 13 18 18 Si 1.86800 * 119.99777 * 0.28166 * 16 14 13 19 19 H 1.48498 * 109.47109 * 89.99834 * 18 16 14 20 20 H 1.48507 * 109.46754 * 209.99574 * 18 16 14 21 21 H 1.48498 * 109.47278 * 329.99405 * 18 16 14 22 22 C 1.34222 * 108.50592 * 359.54733 * 12 11 10 23 23 C 1.50707 * 126.29232 * 180.23890 * 22 12 11 24 24 H 1.08001 * 119.99957 * 359.97438 * 1 2 3 25 25 H 1.08001 * 119.99879 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47227 * 270.00217 * 3 2 1 27 27 H 1.09000 * 109.46954 * 30.00199 * 3 2 1 28 28 H 1.09001 * 109.46841 * 149.99654 * 3 2 1 29 29 H 1.09001 * 109.46966 * 334.99820 * 4 2 1 30 30 H 1.08997 * 109.46797 * 215.00206 * 4 2 1 31 31 H 1.08996 * 109.46514 * 60.00148 * 5 4 2 32 32 H 1.08996 * 109.46848 * 300.00176 * 5 4 2 33 33 H 1.08000 * 125.99491 * 359.96182 * 10 9 7 34 34 H 1.09004 * 109.47166 * 149.69346 * 13 12 11 35 35 H 1.08994 * 109.47507 * 29.69052 * 13 12 11 36 36 H 0.96996 * 119.99730 * 180.02562 * 17 16 14 37 37 H 1.09001 * 109.46792 * 89.99868 * 23 22 12 38 38 H 1.08995 * 109.47272 * 209.99987 * 23 22 12 39 39 H 1.08999 * 109.47175 * 330.00300 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0636 -1.3051 -0.0006 5 6 2.4275 -1.6832 -1.4378 6 8 3.1530 -2.9410 -1.4383 7 6 3.5499 -3.4176 -2.6347 8 8 3.2962 -2.7994 -3.6496 9 6 4.2903 -4.6886 -2.7121 10 6 4.6547 -5.5152 -1.6250 11 7 5.2916 -6.5493 -2.1005 12 7 5.3734 -6.4312 -3.4925 13 6 6.0167 -7.3880 -4.3961 14 6 7.4639 -7.0100 -4.5803 15 1 7.8645 -6.1439 -4.0745 16 6 8.2782 -7.7735 -5.3898 17 7 9.5425 -7.4467 -5.5462 18 14 7.5856 -9.2718 -6.2642 19 1 7.0599 -8.8700 -7.5936 20 1 8.6597 -10.2820 -6.4413 21 1 6.4869 -9.8546 -5.4529 22 6 4.7580 -5.2966 -3.8607 23 6 4.6058 -4.7807 -5.2685 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 2.2451 1.6198 -1.0276 27 1 1.4744 2.0648 0.5139 28 1 3.0159 1.1748 0.5139 29 1 1.4387 -2.0856 0.4334 30 1 2.9742 -1.1990 0.5889 31 1 3.0523 -0.9026 -1.8716 32 1 1.5168 -1.7892 -2.0272 33 1 4.4392 -5.3261 -0.5837 34 1 5.5113 -7.3721 -5.3618 35 1 5.9542 -8.3891 -3.9698 36 1 10.1152 -7.9836 -6.1159 37 1 3.6821 -5.1672 -5.6992 38 1 4.5724 -3.6914 -5.2546 39 1 5.4529 -5.1106 -5.8699 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892761056.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:57 Heat of formation + Delta-G solvation = -10.735399 kcal Electronic energy + Delta-G solvation = -20768.167216 eV Core-core repulsion = 17484.657442 eV Total energy + Delta-G solvation = -3283.509774 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.96448 -39.65045 -37.03895 -35.74550 -33.95502 -32.24956 -31.45622 -30.37204 -28.06715 -27.54744 -26.91200 -24.11725 -22.99863 -22.13781 -20.33801 -19.04429 -18.57729 -17.32410 -17.24225 -16.41481 -16.32453 -15.22061 -15.06679 -14.76936 -14.51103 -14.17994 -13.93975 -13.59494 -13.17036 -13.06573 -12.77834 -12.61796 -12.33898 -12.16521 -12.03102 -11.85516 -11.69215 -11.63843 -11.38366 -11.25815 -10.87815 -10.46871 -10.41253 -10.33924 -9.89737 -9.80476 -9.37654 -8.88278 -8.72035 -8.13692 -6.35994 -4.41383 1.83285 1.85833 2.63286 2.81082 3.08275 3.15781 3.17055 3.32442 3.62817 4.12951 4.54446 4.59121 4.87420 4.92088 4.95873 5.06853 5.14863 5.23382 5.27259 5.36778 5.41443 5.56335 5.60296 5.65560 5.68315 5.75782 5.91224 5.94931 6.21346 6.30487 6.32830 6.41694 6.52191 6.53128 6.72316 6.99215 7.14162 7.46590 8.12797 8.15918 8.26556 8.67204 9.17441 10.76114 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.042098 B = 0.003063 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.956481 B = 9139.836925 C = 9212.206429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.124 4.124 3 C -0.122 4.122 4 C -0.086 4.086 5 C 0.076 3.924 6 O -0.357 6.357 7 C 0.552 3.448 8 O -0.529 6.529 9 C -0.316 4.316 10 C 0.084 3.916 11 N -0.294 5.294 12 N -0.311 5.311 13 C 0.224 3.776 14 C -0.548 4.548 15 H 0.082 0.918 16 C 0.082 3.918 17 N -0.882 5.882 18 Si 0.873 3.127 19 H -0.269 1.269 20 H -0.278 1.278 21 H -0.263 1.263 22 C 0.176 3.824 23 C -0.103 4.103 24 H 0.099 0.901 25 H 0.099 0.901 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.187 0.813 34 H 0.049 0.951 35 H 0.057 0.943 36 H 0.271 0.729 37 H 0.080 0.920 38 H 0.097 0.903 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.784 11.294 7.749 20.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.124 4.124 3 C -0.179 4.179 4 C -0.123 4.123 5 C 0.002 3.998 6 O -0.274 6.274 7 C 0.399 3.601 8 O -0.420 6.420 9 C -0.329 4.329 10 C -0.104 4.104 11 N -0.113 5.113 12 N -0.086 5.086 13 C 0.105 3.895 14 C -0.586 4.586 15 H 0.101 0.899 16 C -0.123 4.123 17 N -0.518 5.518 18 Si 0.698 3.302 19 H -0.195 1.195 20 H -0.203 1.203 21 H -0.187 1.187 22 C 0.038 3.962 23 C -0.161 4.161 24 H 0.117 0.883 25 H 0.118 0.882 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.204 0.796 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.098 0.902 38 H 0.116 0.884 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.989 10.190 7.580 19.646 hybrid contribution -0.566 0.057 -0.666 0.876 sum -15.555 10.247 6.914 19.868 Atomic orbital electron populations 1.23772 0.95179 1.02124 1.01595 1.21583 0.95338 0.95224 1.00280 1.20909 1.00293 0.94297 1.02417 1.20634 1.01174 0.94835 0.95678 1.22872 0.96023 0.83657 0.97267 1.86511 1.68213 1.38839 1.33851 1.19997 0.75589 0.83871 0.80643 1.90759 1.55462 1.59779 1.35980 1.18835 1.20392 1.00091 0.93560 1.23949 0.95640 0.91350 0.99439 1.77218 1.21971 1.23190 0.88952 1.48954 1.37861 1.16591 1.05232 1.20198 0.94456 0.87954 0.86850 1.21094 0.91348 1.15183 1.30987 0.89947 1.24793 0.94609 0.97231 0.95682 1.69860 1.05096 1.39284 1.37528 0.86904 0.79605 0.83015 0.80657 1.19469 1.20317 1.18743 1.21444 0.91160 0.87016 0.96558 1.20699 1.03244 1.03220 0.88938 0.88253 0.88250 0.91235 0.91751 0.91558 0.90106 0.89933 0.91288 0.91396 0.79591 0.93296 0.92490 0.91910 0.90162 0.88418 0.89398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.41 13.89 29.02 0.40 -1.01 16 2 C -0.12 -1.01 5.31 -101.06 -0.54 -1.54 16 3 C -0.12 -0.85 10.03 36.01 0.36 -0.49 16 4 C -0.09 -0.78 5.76 -27.88 -0.16 -0.94 16 5 C 0.08 0.89 5.46 37.16 0.20 1.09 16 6 O -0.36 -5.21 10.07 -40.64 -0.41 -5.62 16 7 C 0.55 9.53 7.95 34.41 0.27 9.80 16 8 O -0.53 -9.81 14.63 -19.28 -0.28 -10.09 16 9 C -0.32 -5.88 6.13 -105.08 -0.64 -6.53 16 10 C 0.08 1.51 11.87 -16.97 -0.20 1.31 16 11 N -0.29 -6.28 12.50 30.87 0.39 -5.89 16 12 N -0.31 -6.82 3.56 -57.77 -0.21 -7.02 16 13 C 0.22 5.13 4.85 -5.20 -0.03 5.11 16 14 C -0.55 -14.83 9.94 -34.44 -0.34 -15.17 16 15 H 0.08 2.52 8.06 -52.49 -0.42 2.10 16 16 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 17 N -0.88 -25.57 13.96 55.43 0.77 -24.80 16 18 Si 0.87 19.49 27.47 -169.99 -4.67 14.82 16 19 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 20 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 21 H -0.26 -5.59 6.54 56.52 0.37 -5.22 16 22 C 0.18 3.48 7.01 -81.59 -0.57 2.91 16 23 C -0.10 -1.76 9.34 36.01 0.34 -1.42 16 24 H 0.10 0.63 8.04 -52.49 -0.42 0.20 16 25 H 0.10 0.70 7.99 -52.49 -0.42 0.28 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.38 8.06 -51.93 -0.42 -0.04 16 28 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 29 H 0.08 0.69 7.99 -51.93 -0.41 0.28 16 30 H 0.08 0.72 8.10 -51.93 -0.42 0.29 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.19 2.61 8.06 -52.49 -0.42 2.19 16 34 H 0.05 1.02 7.05 -51.93 -0.37 0.66 16 35 H 0.06 1.31 7.19 -51.93 -0.37 0.94 16 36 H 0.27 7.27 8.31 -40.82 -0.34 6.94 16 37 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.10 1.65 6.51 -51.93 -0.34 1.31 16 39 H 0.09 1.55 7.70 -51.93 -0.40 1.15 16 LS Contribution 339.62 15.07 5.12 5.12 Total: -1.00 -30.81 339.62 -5.99 -36.80 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -5.69 Total: 1.45 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -1.00 Total: -4.75 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 0.95 Total: -37.72 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: -0.69 Total: -15.71 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -4.67 Total: 14.82 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.81 -5.99 -36.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892761056.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.060 kcal (2) G-P(sol) polarization free energy of solvation -30.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds