Wall clock time and date at job start Tue Mar 31 2020 00:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50704 * 119.99891 * 2 1 4 4 C 1.50704 * 120.00351 * 180.02562 * 2 1 3 5 5 C 1.53003 * 109.47054 * 94.99995 * 4 2 1 6 6 O 1.45200 * 109.46730 * 180.02562 * 5 4 2 7 7 C 1.34756 * 116.99417 * 180.02562 * 6 5 4 8 8 O 1.21520 * 120.00292 * 359.97438 * 7 6 5 9 9 C 1.47291 * 119.99648 * 180.02562 * 7 6 5 10 10 C 1.41344 * 126.42578 * 0.03822 * 9 7 6 11 11 N 1.30427 * 108.01038 * 179.68626 * 10 9 7 12 12 N 1.39939 * 108.92113 * 0.44175 * 11 10 9 13 13 C 1.46491 * 125.74450 * 179.81281 * 12 11 10 14 14 C 1.50702 * 109.46957 * 269.69080 * 13 12 11 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 13 12 17 17 N 1.31514 * 119.99985 * 180.27663 * 16 14 13 18 18 Si 1.86800 * 119.99777 * 0.28166 * 16 14 13 19 19 H 1.48498 * 109.47109 * 89.99834 * 18 16 14 20 20 H 1.48507 * 109.46754 * 209.99574 * 18 16 14 21 21 H 1.48498 * 109.47278 * 329.99405 * 18 16 14 22 22 C 1.34222 * 108.50592 * 359.54733 * 12 11 10 23 23 C 1.50707 * 126.29232 * 180.23890 * 22 12 11 24 24 H 1.08001 * 119.99957 * 359.97438 * 1 2 3 25 25 H 1.08001 * 119.99879 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47227 * 270.00217 * 3 2 1 27 27 H 1.09000 * 109.46954 * 30.00199 * 3 2 1 28 28 H 1.09001 * 109.46841 * 149.99654 * 3 2 1 29 29 H 1.09001 * 109.46966 * 334.99820 * 4 2 1 30 30 H 1.08997 * 109.46797 * 215.00206 * 4 2 1 31 31 H 1.08996 * 109.46514 * 60.00148 * 5 4 2 32 32 H 1.08996 * 109.46848 * 300.00176 * 5 4 2 33 33 H 1.08000 * 125.99491 * 359.96182 * 10 9 7 34 34 H 1.09004 * 109.47166 * 149.69346 * 13 12 11 35 35 H 1.08994 * 109.47507 * 29.69052 * 13 12 11 36 36 H 0.96996 * 119.99730 * 180.02562 * 17 16 14 37 37 H 1.09001 * 109.46792 * 89.99868 * 23 22 12 38 38 H 1.08995 * 109.47272 * 209.99987 * 23 22 12 39 39 H 1.08999 * 109.47175 * 330.00300 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0636 -1.3051 -0.0006 5 6 2.4275 -1.6832 -1.4378 6 8 3.1530 -2.9410 -1.4383 7 6 3.5499 -3.4176 -2.6347 8 8 3.2962 -2.7994 -3.6496 9 6 4.2903 -4.6886 -2.7121 10 6 4.6547 -5.5152 -1.6250 11 7 5.2916 -6.5493 -2.1005 12 7 5.3734 -6.4312 -3.4925 13 6 6.0167 -7.3880 -4.3961 14 6 7.4639 -7.0100 -4.5803 15 1 7.8645 -6.1439 -4.0745 16 6 8.2782 -7.7735 -5.3898 17 7 9.5425 -7.4467 -5.5462 18 14 7.5856 -9.2718 -6.2642 19 1 7.0599 -8.8700 -7.5936 20 1 8.6597 -10.2820 -6.4413 21 1 6.4869 -9.8546 -5.4529 22 6 4.7580 -5.2966 -3.8607 23 6 4.6058 -4.7807 -5.2685 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 2.2451 1.6198 -1.0276 27 1 1.4744 2.0648 0.5139 28 1 3.0159 1.1748 0.5139 29 1 1.4387 -2.0856 0.4334 30 1 2.9742 -1.1990 0.5889 31 1 3.0523 -0.9026 -1.8716 32 1 1.5168 -1.7892 -2.0272 33 1 4.4392 -5.3261 -0.5837 34 1 5.5113 -7.3721 -5.3618 35 1 5.9542 -8.3891 -3.9698 36 1 10.1152 -7.9836 -6.1159 37 1 3.6821 -5.1672 -5.6992 38 1 4.5724 -3.6914 -5.2546 39 1 5.4529 -5.1106 -5.8699 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892761056.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:56 Heat of formation + Delta-G solvation = -28.320598 kcal Electronic energy + Delta-G solvation = -20768.929767 eV Core-core repulsion = 17484.657442 eV Total energy + Delta-G solvation = -3284.272326 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.46279 -40.94856 -37.96615 -36.76151 -35.79952 -34.04657 -32.98867 -31.28514 -29.75703 -28.40585 -28.08627 -25.44001 -24.53272 -23.43337 -21.76700 -20.52760 -19.36136 -19.29426 -18.60577 -17.62645 -17.54428 -16.80711 -16.42212 -15.96207 -15.63751 -15.33674 -15.19087 -14.85496 -14.50478 -14.27898 -14.08799 -13.87508 -13.80673 -13.71222 -13.20038 -13.07528 -12.78285 -12.59344 -12.56510 -12.50756 -12.17307 -12.03342 -11.85631 -11.83360 -11.44547 -11.30217 -10.92080 -10.33694 -9.98235 -9.68297 -8.43481 -6.56282 0.39360 1.12979 1.17705 1.34597 1.35571 1.44991 1.52110 1.95850 2.21607 2.24823 2.88890 3.62316 3.67516 3.88405 3.89826 3.99592 4.07444 4.16230 4.22954 4.39130 4.46873 4.56037 4.62442 4.66264 4.71272 4.83058 4.90636 4.92438 5.04878 5.05698 5.08325 5.16061 5.16382 5.43970 5.55804 5.72590 5.77105 5.93967 6.16200 6.47131 6.66325 6.87408 7.07835 8.72922 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.042098 B = 0.003063 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.956481 B = 9139.836925 C = 9212.206429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.138 4.138 3 C -0.123 4.123 4 C -0.079 4.079 5 C 0.072 3.928 6 O -0.352 6.352 7 C 0.557 3.443 8 O -0.544 6.544 9 C -0.323 4.323 10 C 0.099 3.901 11 N -0.332 5.332 12 N -0.334 5.334 13 C 0.232 3.768 14 C -0.556 4.556 15 H 0.027 0.973 16 C 0.024 3.976 17 N -0.934 5.934 18 Si 0.949 3.051 19 H -0.251 1.251 20 H -0.279 1.279 21 H -0.241 1.241 22 C 0.164 3.836 23 C -0.098 4.098 24 H 0.112 0.888 25 H 0.102 0.898 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.225 0.775 34 H 0.076 0.924 35 H 0.059 0.941 36 H 0.275 0.725 37 H 0.107 0.893 38 H 0.098 0.902 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.178 11.125 7.879 22.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.138 4.138 3 C -0.180 4.180 4 C -0.116 4.116 5 C -0.001 4.001 6 O -0.269 6.269 7 C 0.404 3.596 8 O -0.436 6.436 9 C -0.336 4.336 10 C -0.088 4.088 11 N -0.151 5.151 12 N -0.110 5.110 13 C 0.113 3.887 14 C -0.594 4.594 15 H 0.045 0.955 16 C -0.176 4.176 17 N -0.572 5.572 18 Si 0.770 3.230 19 H -0.175 1.175 20 H -0.204 1.204 21 H -0.165 1.165 22 C 0.027 3.973 23 C -0.156 4.156 24 H 0.130 0.870 25 H 0.121 0.879 26 H 0.086 0.914 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.241 0.759 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.126 0.874 38 H 0.116 0.884 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.410 10.050 7.736 21.540 hybrid contribution 0.147 0.293 -0.581 0.668 sum -17.263 10.343 7.155 21.358 Atomic orbital electron populations 1.23964 0.95066 1.02940 1.00188 1.21632 0.95647 0.95097 1.01461 1.20933 1.00476 0.94105 1.02481 1.20611 1.01628 0.95602 0.93781 1.23149 0.95549 0.82163 0.99257 1.86495 1.68109 1.40075 1.32232 1.19771 0.75271 0.83351 0.81176 1.90749 1.56030 1.60106 1.36702 1.19083 1.20337 1.00720 0.93436 1.24564 0.93495 0.89846 1.00936 1.77163 1.23810 1.25136 0.88997 1.48840 1.39230 1.17436 1.05477 1.19982 0.92072 0.88260 0.88388 1.21186 0.93989 1.13632 1.30602 0.95499 1.25823 0.94640 1.00852 0.96328 1.70023 1.07034 1.41263 1.38914 0.85701 0.79291 0.78014 0.80003 1.17466 1.20384 1.16468 1.21984 0.90620 0.86516 0.98133 1.20744 1.04125 1.03157 0.87556 0.87018 0.87947 0.91446 0.90637 0.91468 0.89529 0.89585 0.91523 0.91335 0.75881 0.90617 0.92269 0.91602 0.87447 0.88393 0.90351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.35 13.89 67.78 0.94 -1.41 16 2 C -0.14 -1.98 5.31 -16.48 -0.09 -2.07 16 3 C -0.12 -1.51 10.03 71.24 0.71 -0.79 16 4 C -0.08 -1.28 5.76 29.85 0.17 -1.11 16 5 C 0.07 1.58 5.46 71.98 0.39 1.97 16 6 O -0.35 -9.69 10.07 -56.67 -0.57 -10.26 16 7 C 0.56 18.52 7.95 70.20 0.56 19.08 16 8 O -0.54 -19.55 14.63 19.77 0.29 -19.26 16 9 C -0.32 -11.72 6.13 -20.16 -0.12 -11.85 16 10 C 0.10 3.45 11.87 85.67 1.02 4.47 16 11 N -0.33 -14.09 12.50 -56.25 -0.70 -14.80 16 12 N -0.33 -14.62 3.56 -336.67 -1.20 -15.82 16 13 C 0.23 10.55 4.85 85.64 0.42 10.96 16 14 C -0.56 -30.95 9.94 25.60 0.25 -30.69 16 15 H 0.03 1.74 8.06 -2.91 -0.02 1.72 16 16 C 0.02 1.31 5.47 84.66 0.46 1.78 16 17 N -0.93 -55.86 13.96 21.45 0.30 -55.56 16 18 Si 0.95 39.54 27.47 68.60 1.88 41.42 16 19 H -0.25 -9.67 7.11 99.48 0.71 -8.96 16 20 H -0.28 -11.57 7.11 99.48 0.71 -10.87 16 21 H -0.24 -9.17 6.54 99.48 0.65 -8.52 16 22 C 0.16 6.42 7.01 42.17 0.30 6.72 16 23 C -0.10 -3.26 9.34 71.24 0.67 -2.60 16 24 H 0.11 1.13 8.04 -2.91 -0.02 1.11 16 25 H 0.10 1.22 7.99 -2.91 -0.02 1.20 16 26 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.07 0.74 8.06 -2.39 -0.02 0.72 16 28 H 0.07 0.79 8.08 -2.39 -0.02 0.77 16 29 H 0.09 1.30 7.99 -2.39 -0.02 1.28 16 30 H 0.09 1.34 8.10 -2.39 -0.02 1.32 16 31 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.22 5.72 8.06 -2.91 -0.02 5.70 16 34 H 0.08 3.02 7.05 -2.38 -0.02 3.00 16 35 H 0.06 2.65 7.19 -2.39 -0.02 2.63 16 36 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 37 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 38 H 0.10 3.25 6.51 -2.39 -0.02 3.23 16 39 H 0.08 2.74 7.70 -2.39 -0.02 2.72 16 Total: -1.00 -68.35 339.62 6.66 -61.69 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: 0.98 Total: 18.12 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: 5.68 Total: -5.53 kcal Atomic # 7 Polarization: -84.57 SS G_CDS: -1.60 Total: -86.18 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: -0.28 Total: -29.52 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 1.88 Total: 41.42 kcal Total: -68.35 6.66 -61.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892761056.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.371 kcal (2) G-P(sol) polarization free energy of solvation -68.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds