Wall clock time and date at job start Tue Mar 31 2020 00:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38120 * 126.29814 * 2 1 4 4 C 1.47285 * 126.42688 * 0.04807 * 3 2 1 5 5 O 1.21521 * 119.99997 * 0.29761 * 4 3 2 6 6 O 1.34754 * 119.99904 * 180.30106 * 4 3 2 7 7 C 1.45198 * 117.00124 * 174.48393 * 6 4 3 8 8 C 1.53003 * 112.84793 * 294.54087 * 7 6 4 9 9 C 1.53781 * 113.61637 * 163.34429 * 7 6 4 10 10 C 1.53951 * 87.02165 * 220.04500 * 9 7 6 11 11 C 1.53783 * 113.61603 * 65.73644 * 7 6 4 12 12 C 1.41346 * 107.14405 * 180.27978 * 3 2 1 13 13 N 1.30432 * 108.01592 * 359.76826 * 12 3 2 14 14 N 1.34231 * 126.29155 * 179.88409 * 2 1 3 15 15 C 1.46492 * 125.74528 * 359.97438 * 14 2 1 16 16 C 1.50697 * 109.47423 * 269.72005 * 15 14 2 17 17 H 1.08007 * 119.99549 * 359.97438 * 16 15 14 18 18 C 1.37870 * 120.00452 * 179.72861 * 16 15 14 19 19 N 1.31512 * 120.00143 * 0.26593 * 18 16 15 20 20 Si 1.86802 * 120.00420 * 180.27313 * 18 16 15 21 21 H 1.48508 * 109.47077 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47424 * 119.99206 * 20 18 16 23 23 H 1.48496 * 109.47120 * 239.99946 * 20 18 16 24 24 H 1.09004 * 109.47239 * 270.11857 * 1 2 3 25 25 H 1.09006 * 109.46891 * 30.11751 * 1 2 3 26 26 H 1.09004 * 109.47619 * 150.11781 * 1 2 3 27 27 H 1.09003 * 109.46750 * 57.00975 * 8 7 6 28 28 H 1.09001 * 109.47031 * 177.01100 * 8 7 6 29 29 H 1.09000 * 109.47163 * 297.01259 * 8 7 6 30 30 H 1.08997 * 113.61433 * 334.56816 * 9 7 6 31 31 H 1.09010 * 113.60950 * 105.47178 * 9 7 6 32 32 H 1.09002 * 113.54090 * 270.81380 * 10 9 7 33 33 H 1.08998 * 113.74467 * 139.94381 * 10 9 7 34 34 H 1.09000 * 113.61692 * 254.53134 * 11 7 6 35 35 H 1.08999 * 113.61123 * 25.43342 * 11 7 6 36 36 H 1.07998 * 125.99108 * 179.79062 * 12 3 2 37 37 H 1.08995 * 109.47434 * 149.71692 * 15 14 2 38 38 H 1.09008 * 109.47011 * 29.71563 * 15 14 2 39 39 H 0.96998 * 120.00787 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.1132 0.0000 4 6 1.8872 2.5196 0.0010 5 8 0.7019 2.7873 0.0074 6 8 2.8015 3.5095 -0.0053 7 6 2.3021 4.8673 -0.1282 8 6 1.6325 5.1341 -1.4778 9 6 3.3285 5.9399 0.2729 10 6 2.1627 6.6906 0.9419 11 6 1.4644 5.3271 1.0767 12 6 3.6598 0.6494 -0.0066 13 7 3.6339 -0.6546 -0.0052 14 7 2.3015 -1.0819 0.0022 15 6 1.8497 -2.4754 0.0055 16 6 1.7019 -2.9522 1.4274 17 1 1.9228 -2.2841 2.2467 18 6 1.2797 -4.2397 1.6825 19 7 1.0110 -5.0534 0.6849 20 14 1.0891 -4.8283 3.4451 21 1 1.4518 -3.7294 4.3759 22 1 -0.3197 -5.2335 3.6822 23 1 1.9844 -5.9898 3.6786 24 1 -0.3634 0.0021 1.0277 25 1 -0.3633 0.8890 -0.5157 26 1 -0.3634 -0.8910 -0.5120 27 1 0.8214 4.4216 -1.6281 28 1 1.2326 6.1481 -1.4909 29 1 2.3665 5.0227 -2.2759 30 1 4.0798 5.5835 0.9775 31 1 3.7605 6.4700 -0.5760 32 1 1.6481 7.3805 0.2729 33 1 2.4237 7.1439 1.8981 34 1 0.3937 5.3632 0.8758 35 1 1.7052 4.8027 2.0014 36 1 4.5460 1.2666 -0.0115 37 1 2.5815 -3.0959 -0.5115 38 1 0.8884 -2.5469 -0.5034 39 1 0.7144 -5.9593 0.8643 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892836524.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:33 Heat of formation + Delta-G solvation = -3.820763 kcal Electronic energy + Delta-G solvation = -21595.211594 eV Core-core repulsion = 18312.001661 eV Total energy + Delta-G solvation = -3283.209933 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -40.93966 -40.25871 -37.99743 -35.32096 -33.90976 -32.13604 -31.22846 -29.34385 -27.63342 -26.74232 -25.91864 -24.35461 -23.36388 -22.16827 -20.36188 -18.87491 -18.68267 -17.17449 -16.80733 -16.66171 -15.72977 -15.21363 -15.11842 -14.57218 -14.32429 -14.04405 -13.70665 -13.33871 -12.76231 -12.68507 -12.51553 -12.42343 -12.29477 -12.13005 -11.82749 -11.61223 -11.53210 -11.32862 -11.13335 -11.10799 -10.92333 -10.64078 -10.37617 -10.17682 -10.04911 -9.93288 -9.61849 -8.73521 -8.63033 -8.03899 -6.35797 -4.43699 1.96910 2.74509 2.89541 3.15991 3.24123 3.28920 3.44220 3.72674 4.22873 4.31464 4.35758 4.60385 4.61090 4.97002 5.02422 5.17134 5.30151 5.34920 5.49027 5.52806 5.59149 5.63438 5.68384 5.71682 5.82821 5.92113 5.96790 6.04761 6.15711 6.20921 6.37329 6.45944 6.75497 6.87647 6.89497 7.15492 7.52983 7.72476 7.74819 8.27235 8.39503 8.62106 9.23469 10.72515 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.032466 B = 0.003745 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.221672 B = 7475.402287 C = 7593.147980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.170 3.830 3 C -0.319 4.319 4 C 0.551 3.449 5 O -0.526 6.526 6 O -0.346 6.346 7 C 0.096 3.904 8 C -0.155 4.155 9 C -0.120 4.120 10 C -0.142 4.142 11 C -0.147 4.147 12 C 0.079 3.921 13 N -0.298 5.298 14 N -0.311 5.311 15 C 0.250 3.750 16 C -0.540 4.540 17 H 0.066 0.934 18 C 0.067 3.933 19 N -0.889 5.889 20 Si 0.908 3.092 21 H -0.271 1.271 22 H -0.280 1.280 23 H -0.280 1.280 24 H 0.086 0.914 25 H 0.093 0.907 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.184 0.816 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.003 19.105 -2.367 19.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.032 3.968 3 C -0.333 4.333 4 C 0.399 3.601 5 O -0.416 6.416 6 O -0.263 6.263 7 C 0.060 3.940 8 C -0.212 4.212 9 C -0.158 4.158 10 C -0.180 4.180 11 C -0.184 4.184 12 C -0.108 4.108 13 N -0.117 5.117 14 N -0.087 5.087 15 C 0.133 3.867 16 C -0.579 4.579 17 H 0.084 0.916 18 C -0.137 4.137 19 N -0.527 5.527 20 Si 0.735 3.265 21 H -0.195 1.195 22 H -0.205 1.205 23 H -0.205 1.205 24 H 0.104 0.896 25 H 0.111 0.889 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.112 0.888 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.201 0.799 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.288 17.753 -2.408 17.962 hybrid contribution -0.551 0.248 0.937 1.115 sum 0.737 18.001 -1.470 18.076 Atomic orbital electron populations 1.20606 0.86609 1.03929 1.04119 1.21448 0.94943 0.86474 0.93893 1.18913 0.93715 0.89602 1.31048 1.19978 0.83581 0.84816 0.71759 1.90725 1.17938 1.84567 1.48381 1.86598 1.39935 1.15570 1.84242 1.23605 0.95987 0.78614 0.95832 1.21995 1.01478 1.02939 0.94814 1.23167 0.96923 0.94586 1.01105 1.22794 0.97375 0.96454 1.01360 1.23433 1.00555 0.96040 0.98385 1.23915 0.96697 0.92115 0.98109 1.77207 0.98257 1.12363 1.23884 1.49408 1.02627 1.08277 1.48426 1.19897 0.96488 0.70719 0.99578 1.21282 1.47311 0.98319 0.90949 0.91552 1.24923 0.94400 0.95961 0.98368 1.69917 1.44391 1.07210 1.31154 0.86261 0.77971 0.78867 0.83388 1.19508 1.20528 1.20526 0.89592 0.88887 0.90565 0.90494 0.90931 0.91660 0.88824 0.90425 0.89833 0.90605 0.90283 0.89464 0.79910 0.92342 0.92474 0.92126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.67 9.56 36.00 0.34 -1.32 16 2 C 0.17 3.48 7.01 -81.59 -0.57 2.90 16 3 C -0.32 -6.11 6.13 -105.08 -0.64 -6.75 16 4 C 0.55 9.63 7.48 34.41 0.26 9.89 16 5 O -0.53 -9.53 12.58 -19.28 -0.24 -9.77 16 6 O -0.35 -5.27 10.02 -40.64 -0.41 -5.68 16 7 C 0.10 1.16 1.19 -89.80 -0.11 1.06 16 8 C -0.16 -1.70 9.05 37.16 0.34 -1.36 16 9 C -0.12 -1.11 7.52 -25.83 -0.19 -1.30 16 10 C -0.14 -1.19 7.74 -25.83 -0.20 -1.39 16 11 C -0.15 -1.67 6.36 -25.92 -0.16 -1.84 16 12 C 0.08 1.48 11.87 -16.96 -0.20 1.27 16 13 N -0.30 -6.56 12.50 30.87 0.39 -6.17 16 14 N -0.31 -7.08 3.56 -57.77 -0.21 -7.28 16 15 C 0.25 6.20 5.97 -5.20 -0.03 6.17 16 16 C -0.54 -14.51 9.39 -34.44 -0.32 -14.83 16 17 H 0.07 1.84 7.81 -52.48 -0.41 1.43 16 18 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 19 N -0.89 -24.45 13.29 55.43 0.74 -23.71 16 20 Si 0.91 20.73 29.54 -169.99 -5.02 15.71 16 21 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 25 H 0.09 1.53 6.52 -51.93 -0.34 1.20 16 26 H 0.08 1.30 7.05 -51.93 -0.37 0.94 16 27 H 0.08 1.00 6.73 -51.93 -0.35 0.65 16 28 H 0.07 0.63 7.31 -51.93 -0.38 0.25 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.08 0.60 8.10 -51.92 -0.42 0.18 16 32 H 0.08 0.59 7.60 -51.93 -0.39 0.20 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 35 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.18 2.72 8.06 -52.49 -0.42 2.29 16 37 H 0.06 1.54 8.14 -51.93 -0.42 1.11 16 38 H 0.06 1.39 7.01 -51.92 -0.36 1.03 16 39 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 328.95 15.07 4.96 4.96 Total: -1.00 -29.44 328.95 -6.93 -36.37 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -5.54 Total: 1.38 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: -1.60 Total: -5.80 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: 0.92 Total: -37.16 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: -0.65 Total: -15.45 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.44 -6.93 -36.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892836524.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.548 kcal (2) G-P(sol) polarization free energy of solvation -29.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds