Wall clock time and date at job start Tue Mar 31 2020 00:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38120 * 126.29814 * 2 1 4 4 C 1.47285 * 126.42688 * 0.04807 * 3 2 1 5 5 O 1.21521 * 119.99997 * 0.29761 * 4 3 2 6 6 O 1.34754 * 119.99904 * 180.30106 * 4 3 2 7 7 C 1.45198 * 117.00124 * 174.48393 * 6 4 3 8 8 C 1.53003 * 112.84793 * 294.54087 * 7 6 4 9 9 C 1.53781 * 113.61637 * 163.34429 * 7 6 4 10 10 C 1.53951 * 87.02165 * 220.04500 * 9 7 6 11 11 C 1.53783 * 113.61603 * 65.73644 * 7 6 4 12 12 C 1.41346 * 107.14405 * 180.27978 * 3 2 1 13 13 N 1.30432 * 108.01592 * 359.76826 * 12 3 2 14 14 N 1.34231 * 126.29155 * 179.88409 * 2 1 3 15 15 C 1.46492 * 125.74528 * 359.97438 * 14 2 1 16 16 C 1.50697 * 109.47423 * 269.72005 * 15 14 2 17 17 H 1.08007 * 119.99549 * 359.97438 * 16 15 14 18 18 C 1.37870 * 120.00452 * 179.72861 * 16 15 14 19 19 N 1.31512 * 120.00143 * 0.26593 * 18 16 15 20 20 Si 1.86802 * 120.00420 * 180.27313 * 18 16 15 21 21 H 1.48508 * 109.47077 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47424 * 119.99206 * 20 18 16 23 23 H 1.48496 * 109.47120 * 239.99946 * 20 18 16 24 24 H 1.09004 * 109.47239 * 270.11857 * 1 2 3 25 25 H 1.09006 * 109.46891 * 30.11751 * 1 2 3 26 26 H 1.09004 * 109.47619 * 150.11781 * 1 2 3 27 27 H 1.09003 * 109.46750 * 57.00975 * 8 7 6 28 28 H 1.09001 * 109.47031 * 177.01100 * 8 7 6 29 29 H 1.09000 * 109.47163 * 297.01259 * 8 7 6 30 30 H 1.08997 * 113.61433 * 334.56816 * 9 7 6 31 31 H 1.09010 * 113.60950 * 105.47178 * 9 7 6 32 32 H 1.09002 * 113.54090 * 270.81380 * 10 9 7 33 33 H 1.08998 * 113.74467 * 139.94381 * 10 9 7 34 34 H 1.09000 * 113.61692 * 254.53134 * 11 7 6 35 35 H 1.08999 * 113.61123 * 25.43342 * 11 7 6 36 36 H 1.07998 * 125.99108 * 179.79062 * 12 3 2 37 37 H 1.08995 * 109.47434 * 149.71692 * 15 14 2 38 38 H 1.09008 * 109.47011 * 29.71563 * 15 14 2 39 39 H 0.96998 * 120.00787 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.1132 0.0000 4 6 1.8872 2.5196 0.0010 5 8 0.7019 2.7873 0.0074 6 8 2.8015 3.5095 -0.0053 7 6 2.3021 4.8673 -0.1282 8 6 1.6325 5.1341 -1.4778 9 6 3.3285 5.9399 0.2729 10 6 2.1627 6.6906 0.9419 11 6 1.4644 5.3271 1.0767 12 6 3.6598 0.6494 -0.0066 13 7 3.6339 -0.6546 -0.0052 14 7 2.3015 -1.0819 0.0022 15 6 1.8497 -2.4754 0.0055 16 6 1.7019 -2.9522 1.4274 17 1 1.9228 -2.2841 2.2467 18 6 1.2797 -4.2397 1.6825 19 7 1.0110 -5.0534 0.6849 20 14 1.0891 -4.8283 3.4451 21 1 1.4518 -3.7294 4.3759 22 1 -0.3197 -5.2335 3.6822 23 1 1.9844 -5.9898 3.6786 24 1 -0.3634 0.0021 1.0277 25 1 -0.3633 0.8890 -0.5157 26 1 -0.3634 -0.8910 -0.5120 27 1 0.8214 4.4216 -1.6281 28 1 1.2326 6.1481 -1.4909 29 1 2.3665 5.0227 -2.2759 30 1 4.0798 5.5835 0.9775 31 1 3.7605 6.4700 -0.5760 32 1 1.6481 7.3805 0.2729 33 1 2.4237 7.1439 1.8981 34 1 0.3937 5.3632 0.8758 35 1 1.7052 4.8027 2.0014 36 1 4.5460 1.2666 -0.0115 37 1 2.5815 -3.0959 -0.5115 38 1 0.8884 -2.5469 -0.5034 39 1 0.7144 -5.9593 0.8643 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892836524.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:32 Heat of formation + Delta-G solvation = -19.419359 kcal Electronic energy + Delta-G solvation = -21595.888000 eV Core-core repulsion = 18312.001661 eV Total energy + Delta-G solvation = -3283.886339 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.43954 -41.44115 -39.11463 -36.53414 -35.83190 -33.89957 -32.85189 -30.24961 -29.35239 -28.35526 -26.72430 -25.75246 -24.88957 -23.45847 -21.77398 -20.44969 -19.72921 -18.88305 -18.43671 -17.83068 -16.95442 -16.87726 -16.33392 -16.08299 -15.81825 -15.35513 -14.98554 -14.64384 -14.34483 -14.15878 -13.73724 -13.63110 -13.56808 -13.26563 -13.16766 -13.14217 -13.00428 -12.72082 -12.55198 -12.35111 -12.26978 -11.94774 -11.85284 -11.82816 -11.44462 -10.98965 -10.90872 -10.77389 -10.33578 -9.65098 -8.39539 -6.55800 0.45930 1.19714 1.36126 1.37933 1.45247 1.53537 1.97831 2.28158 2.31956 2.93095 3.47023 3.55616 3.65949 3.72888 3.80370 3.84525 3.98255 4.14558 4.38430 4.54360 4.57776 4.63370 4.71542 4.75991 4.82057 4.85626 4.89988 4.97489 5.00200 5.05661 5.09534 5.12938 5.29144 5.39878 5.47652 5.57669 5.67602 5.72400 5.96835 6.52637 6.72923 7.00617 7.15532 8.68818 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.032466 B = 0.003745 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.221672 B = 7475.402287 C = 7593.147980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.158 3.842 3 C -0.324 4.324 4 C 0.556 3.444 5 O -0.535 6.535 6 O -0.347 6.347 7 C 0.074 3.926 8 C -0.152 4.152 9 C -0.112 4.112 10 C -0.126 4.126 11 C -0.156 4.156 12 C 0.094 3.906 13 N -0.335 5.335 14 N -0.334 5.334 15 C 0.266 3.734 16 C -0.557 4.557 17 H 0.052 0.948 18 C 0.025 3.975 19 N -0.916 5.916 20 Si 0.972 3.028 21 H -0.273 1.273 22 H -0.267 1.267 23 H -0.273 1.273 24 H 0.088 0.912 25 H 0.104 0.896 26 H 0.077 0.923 27 H 0.051 0.949 28 H 0.098 0.902 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.222 0.778 37 H 0.034 0.966 38 H 0.056 0.944 39 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.267 21.280 -1.817 21.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.022 3.978 3 C -0.337 4.337 4 C 0.403 3.597 5 O -0.426 6.426 6 O -0.264 6.264 7 C 0.039 3.961 8 C -0.209 4.209 9 C -0.149 4.149 10 C -0.163 4.163 11 C -0.194 4.194 12 C -0.093 4.093 13 N -0.154 5.154 14 N -0.110 5.110 15 C 0.147 3.853 16 C -0.595 4.595 17 H 0.070 0.930 18 C -0.176 4.176 19 N -0.553 5.553 20 Si 0.796 3.204 21 H -0.198 1.198 22 H -0.192 1.192 23 H -0.199 1.199 24 H 0.106 0.894 25 H 0.123 0.877 26 H 0.096 0.904 27 H 0.070 0.930 28 H 0.117 0.883 29 H 0.091 0.909 30 H 0.111 0.889 31 H 0.117 0.883 32 H 0.120 0.880 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.238 0.762 37 H 0.052 0.948 38 H 0.073 0.927 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.555 19.954 -1.867 20.102 hybrid contribution -0.609 -0.286 0.728 0.991 sum 0.946 19.668 -1.140 19.724 Atomic orbital electron populations 1.20633 0.85132 1.04511 1.04374 1.21956 0.96087 0.86331 0.93444 1.19187 0.93787 0.90471 1.30265 1.19697 0.83650 0.84716 0.71603 1.90716 1.18409 1.84773 1.48724 1.86575 1.39497 1.16695 1.83676 1.24219 0.97938 0.77273 0.96703 1.21994 1.00798 1.03749 0.94382 1.23201 0.96655 0.93235 1.01839 1.22791 0.96095 0.94968 1.02440 1.23462 1.00179 0.98296 0.97416 1.24521 0.97857 0.91277 0.95612 1.77156 0.98249 1.14125 1.25898 1.49176 1.03363 1.07904 1.50575 1.19455 0.95552 0.71923 0.98336 1.21409 1.47921 0.98682 0.91467 0.93015 1.25712 0.93758 0.95866 1.02304 1.69991 1.44649 1.07670 1.33036 0.85291 0.78498 0.78168 0.78441 1.19802 1.19231 1.19865 0.89385 0.87723 0.90441 0.92991 0.88325 0.90939 0.88894 0.88325 0.87955 0.89209 0.91253 0.90991 0.76198 0.94811 0.92671 0.91591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.15 9.56 71.23 0.68 -2.47 16 2 C 0.16 6.54 7.01 42.16 0.30 6.83 16 3 C -0.32 -12.27 6.13 -20.16 -0.12 -12.39 16 4 C 0.56 19.02 7.48 70.20 0.52 19.54 16 5 O -0.53 -19.14 12.58 19.77 0.25 -18.89 16 6 O -0.35 -10.07 10.02 -56.65 -0.57 -10.64 16 7 C 0.07 1.65 1.19 -10.27 -0.01 1.64 16 8 C -0.15 -3.01 9.05 71.98 0.65 -2.36 16 9 C -0.11 -1.70 7.52 31.18 0.23 -1.47 16 10 C -0.13 -1.68 7.74 31.18 0.24 -1.43 16 11 C -0.16 -3.31 6.36 31.12 0.20 -3.11 16 12 C 0.09 3.46 11.87 85.67 1.02 4.48 16 13 N -0.34 -14.94 12.50 -56.25 -0.70 -15.64 16 14 N -0.33 -15.56 3.56 -336.68 -1.20 -16.76 16 15 C 0.27 13.65 5.97 85.63 0.51 14.16 16 16 C -0.56 -30.59 9.39 25.60 0.24 -30.35 16 17 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 18 C 0.03 1.35 5.46 84.65 0.46 1.81 16 19 N -0.92 -50.80 13.29 21.44 0.28 -50.51 16 20 Si 0.97 42.48 29.54 68.60 2.03 44.51 16 21 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 22 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 23 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 24 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 25 H 0.10 3.44 6.52 -2.38 -0.02 3.42 16 26 H 0.08 2.70 7.05 -2.38 -0.02 2.68 16 27 H 0.05 1.30 6.73 -2.39 -0.02 1.28 16 28 H 0.10 1.40 7.31 -2.39 -0.02 1.38 16 29 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.10 1.12 8.10 -2.38 -0.02 1.10 16 32 H 0.10 1.02 7.60 -2.39 -0.02 1.00 16 33 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.07 1.58 8.10 -2.39 -0.02 1.56 16 35 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.22 6.08 8.06 -2.91 -0.02 6.05 16 37 H 0.03 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.06 2.80 7.01 -2.38 -0.02 2.78 16 39 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 Total: -1.00 -63.80 328.95 6.06 -57.74 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 1.05 Total: 15.32 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: 4.92 Total: -5.13 kcal Atomic # 7 Polarization: -81.30 SS G_CDS: -1.62 Total: -82.92 kcal Atomic # 8 Polarization: -29.21 SS G_CDS: -0.32 Total: -29.53 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -63.80 6.06 -57.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892836524.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.320 kcal (2) G-P(sol) polarization free energy of solvation -63.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds