Wall clock time and date at job start Tue Mar 31 2020 00:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34507 * 125.79319 * 2 1 4 4 C 1.41380 * 106.84539 * 179.74870 * 3 2 1 5 5 C 1.34519 * 106.83558 * 0.37057 * 4 3 2 6 6 C 1.50699 * 125.78441 * 179.88846 * 5 4 3 7 7 N 1.46902 * 109.47129 * 89.72133 * 6 5 4 8 8 C 1.46902 * 111.00164 * 189.99870 * 7 6 5 9 9 C 1.53236 * 109.33995 * 187.24999 * 8 7 6 10 10 N 1.47080 * 108.52246 * 306.16679 * 9 8 7 11 11 C 1.34769 * 120.88293 * 231.18561 * 10 9 8 12 12 O 1.21689 * 120.00395 * 5.23485 * 11 10 9 13 13 C 1.46375 * 120.00223 * 185.23035 * 11 10 9 14 14 H 1.08006 * 119.99799 * 354.99400 * 13 11 10 15 15 C 1.40045 * 120.00306 * 174.72056 * 13 11 10 16 16 N 1.30675 * 120.00198 * 0.02562 * 15 13 11 17 17 Si 1.86799 * 120.00204 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.46934 * 60.00142 * 17 15 13 19 19 H 1.48502 * 109.47317 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47632 * 300.00490 * 17 15 13 21 21 C 1.47086 * 118.23376 * 51.46061 * 10 9 8 22 22 C 1.46902 * 110.99567 * 314.29563 * 7 6 5 23 23 O 1.34296 * 108.42235 * 359.62565 * 5 4 3 24 24 H 1.08998 * 109.47449 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46859 * 300.00538 * 1 2 3 26 26 H 1.08998 * 109.46824 * 60.00537 * 1 2 3 27 27 H 1.08008 * 126.57678 * 359.97438 * 3 2 1 28 28 H 1.07996 * 126.58276 * 180.23474 * 4 3 2 29 29 H 1.08996 * 109.47589 * 329.71720 * 6 5 4 30 30 H 1.09001 * 109.47289 * 209.71413 * 6 5 4 31 31 H 1.08998 * 109.49453 * 67.28792 * 8 7 6 32 32 H 1.09003 * 109.49212 * 307.21061 * 8 7 6 33 33 H 1.09000 * 109.62661 * 186.45695 * 9 8 7 34 34 H 1.09002 * 109.79027 * 65.97187 * 9 8 7 35 35 H 0.96989 * 120.00376 * 180.02562 * 16 15 13 36 36 H 1.08995 * 109.62802 * 68.25347 * 21 10 9 37 37 H 1.08997 * 109.62711 * 188.83146 * 21 10 9 38 38 H 1.08998 * 109.49642 * 292.70383 * 22 7 6 39 39 H 1.08998 * 109.49127 * 52.76136 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0910 0.0000 4 6 3.6309 0.6320 0.0059 5 6 3.5813 -0.7123 0.0009 6 6 4.7706 -1.6379 0.0019 7 7 5.1560 -1.9384 1.3873 8 6 6.4455 -2.6404 1.4345 9 6 6.7239 -3.0942 2.8714 10 7 6.6189 -1.9261 3.7590 11 6 7.6035 -1.6282 4.6297 12 8 8.6364 -2.2715 4.6238 13 6 7.4305 -0.5306 5.5826 14 1 6.5492 0.0919 5.5352 15 6 8.4050 -0.2913 6.5595 16 7 9.4691 -1.0474 6.6201 17 14 8.1846 1.1098 7.7751 18 1 6.9391 0.8968 8.5555 19 1 9.3468 1.1515 8.6986 20 1 8.0927 2.3954 7.0376 21 6 5.4081 -1.0952 3.6753 22 6 5.1842 -0.7167 2.2026 23 8 2.2924 -1.0895 0.0006 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 1.9666 2.1204 -0.0004 28 1 4.5212 1.2432 0.0111 29 1 5.6043 -1.1590 -0.5114 30 1 4.5110 -2.5636 -0.5118 31 1 7.2379 -1.9682 1.1054 32 1 6.4103 -3.5104 0.7787 33 1 7.7282 -3.5132 2.9350 34 1 5.9937 -3.8468 3.1688 35 1 10.1438 -0.8819 7.2969 36 1 4.5516 -1.6579 4.0463 37 1 5.5420 -0.1920 4.2705 38 1 5.9941 -0.0713 1.8628 39 1 4.2344 -0.1913 2.1034 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895068377.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:21:06 Heat of formation + Delta-G solvation = -5.509851 kcal Electronic energy + Delta-G solvation = -21748.949883 eV Core-core repulsion = 18465.666705 eV Total energy + Delta-G solvation = -3283.283178 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.65606 -38.83402 -36.63785 -33.79355 -33.20585 -32.49577 -31.92160 -30.51236 -28.81485 -26.71006 -25.46521 -23.53512 -22.87928 -21.74959 -20.72145 -20.10821 -18.80588 -16.89936 -16.49586 -16.22455 -15.69517 -14.93453 -14.80607 -14.57404 -14.28098 -14.02167 -13.91764 -13.65566 -13.33272 -13.12156 -12.83463 -12.55506 -12.48206 -12.19971 -11.81501 -11.61319 -11.38509 -11.16837 -10.96068 -10.88780 -10.74741 -10.44604 -10.23475 -10.00210 -9.80698 -8.85337 -8.45480 -8.09513 -7.58496 -7.17913 -6.19779 -4.64752 1.63785 2.53893 2.84500 3.15312 3.20289 3.21938 4.05081 4.14637 4.52339 4.55264 4.62671 4.83698 4.99057 5.06228 5.24065 5.28492 5.32535 5.43858 5.51088 5.53171 5.69002 5.74859 5.80946 5.85321 5.90793 5.94101 6.09802 6.11618 6.26734 6.47067 6.49040 6.54649 6.72369 7.10649 7.17538 7.25667 7.45251 7.61925 8.13552 8.36846 9.01937 9.44563 10.57559 10.76128 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022787 B = 0.004274 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.501531 B = 6550.165926 C = 7433.820477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.019 4.019 3 C -0.211 4.211 4 C -0.204 4.204 5 C 0.000 4.000 6 C 0.131 3.869 7 N -0.532 5.532 8 C 0.046 3.954 9 C 0.126 3.874 10 N -0.645 5.645 11 C 0.560 3.440 12 O -0.579 6.579 13 C -0.545 4.545 14 H 0.072 0.928 15 C 0.088 3.912 16 N -0.769 5.769 17 Si 0.906 3.094 18 H -0.267 1.267 19 H -0.280 1.280 20 H -0.268 1.268 21 C 0.130 3.870 22 C 0.035 3.965 23 O -0.166 6.166 24 H 0.074 0.926 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.146 0.854 28 H 0.146 0.854 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.037 0.963 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.050 0.950 35 H 0.269 0.731 36 H 0.049 0.951 37 H 0.094 0.906 38 H 0.036 0.964 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.824 3.156 -13.149 20.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.070 4.070 3 C -0.231 4.231 4 C -0.224 4.224 5 C -0.050 4.050 6 C 0.004 3.996 7 N -0.258 5.258 8 C -0.083 4.083 9 C 0.001 3.999 10 N -0.383 5.383 11 C 0.366 3.634 12 O -0.462 6.462 13 C -0.582 4.582 14 H 0.090 0.910 15 C -0.132 4.132 16 N -0.397 5.397 17 Si 0.731 3.269 18 H -0.192 1.192 19 H -0.205 1.205 20 H -0.193 1.193 21 C 0.005 3.995 22 C -0.093 4.093 23 O -0.063 6.063 24 H 0.093 0.907 25 H 0.103 0.897 26 H 0.101 0.899 27 H 0.164 0.836 28 H 0.164 0.836 29 H 0.081 0.919 30 H 0.108 0.892 31 H 0.056 0.944 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.112 0.888 38 H 0.054 0.946 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -14.488 2.128 -12.840 19.475 hybrid contribution 0.462 1.544 0.189 1.623 sum -14.025 3.672 -12.651 19.242 Atomic orbital electron populations 1.20276 0.85300 1.03915 1.03362 1.22416 0.93978 0.84291 1.06270 1.21509 0.92647 0.99334 1.09567 1.21607 0.98272 0.93882 1.08635 1.22190 0.83021 0.94181 1.05626 1.20548 0.90113 0.97228 0.91706 1.62136 1.31169 1.24428 1.08083 1.22548 0.88446 0.97926 0.99347 1.21193 1.01872 0.89655 0.87172 1.48252 1.20232 1.28393 1.41456 1.18239 0.81113 0.84641 0.79411 1.90585 1.27875 1.55370 1.72362 1.20941 1.07032 1.15313 1.14867 0.91022 1.25722 0.94114 0.96086 0.97239 1.70001 1.06761 1.33799 1.29174 0.86458 0.78453 0.81737 0.80276 1.19207 1.20534 1.19264 1.21566 0.88172 0.96376 0.93378 1.22824 1.00811 0.90521 0.95153 1.83982 1.16281 1.34904 1.71094 0.90666 0.89722 0.89944 0.83645 0.83649 0.91876 0.89195 0.94448 0.90595 0.89413 0.93190 0.92033 0.93263 0.88776 0.94566 0.90182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.53 10.42 36.01 0.38 -0.15 16 2 C -0.02 -0.22 7.32 -35.63 -0.26 -0.48 16 3 C -0.21 -2.42 10.81 -39.71 -0.43 -2.85 16 4 C -0.20 -2.57 9.09 -39.70 -0.36 -2.93 16 5 C 0.00 0.01 5.50 -35.62 -0.20 -0.19 16 6 C 0.13 1.68 5.81 -4.98 -0.03 1.66 16 7 N -0.53 -8.31 4.77 -235.46 -1.12 -9.44 16 8 C 0.05 0.74 5.58 -3.70 -0.02 0.72 16 9 C 0.13 2.52 6.61 -3.60 -0.02 2.50 16 10 N -0.64 -15.08 3.00 -173.84 -0.52 -15.60 16 11 C 0.56 16.13 7.62 -12.99 -0.10 16.04 16 12 O -0.58 -18.86 14.49 5.20 0.08 -18.78 16 13 C -0.54 -15.38 8.86 -35.63 -0.32 -15.69 16 14 H 0.07 1.84 5.74 -52.48 -0.30 1.54 16 15 C 0.09 2.46 5.50 -17.37 -0.10 2.37 16 16 N -0.77 -23.11 11.84 55.55 0.66 -22.45 16 17 Si 0.91 20.11 29.56 -169.99 -5.02 15.09 16 18 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 19 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 20 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 21 C 0.13 2.56 6.50 -3.36 -0.02 2.54 16 22 C 0.04 0.59 4.95 -3.46 -0.02 0.58 16 23 O -0.17 -2.29 10.65 5.72 0.06 -2.23 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.15 1.34 8.06 -52.48 -0.42 0.92 16 28 H 0.15 1.69 8.06 -52.49 -0.42 1.27 16 29 H 0.06 0.75 8.08 -51.93 -0.42 0.33 16 30 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 1.02 8.11 -51.93 -0.42 0.59 16 33 H 0.09 1.93 7.04 -51.93 -0.37 1.56 16 34 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.27 7.35 8.29 -40.82 -0.34 7.01 16 36 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.09 1.91 5.46 -51.93 -0.28 1.62 16 38 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.08 1.26 5.55 -51.93 -0.29 0.97 16 LS Contribution 319.72 15.07 4.82 4.82 Total: -1.00 -34.79 319.72 -7.99 -42.78 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -5.44 Total: 1.72 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: -1.49 Total: 4.09 kcal Atomic # 7 Polarization: -46.50 SS G_CDS: -0.99 Total: -47.49 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: 0.14 Total: -21.01 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -34.79 -7.99 -42.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895068377.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.269 kcal (2) G-P(sol) polarization free energy of solvation -34.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds