Wall clock time and date at job start Tue Mar 31 2020 00:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34507 * 125.79319 * 2 1 4 4 C 1.41380 * 106.84539 * 179.74870 * 3 2 1 5 5 C 1.34519 * 106.83558 * 0.37057 * 4 3 2 6 6 C 1.50699 * 125.78441 * 179.88846 * 5 4 3 7 7 N 1.46902 * 109.47129 * 89.72133 * 6 5 4 8 8 C 1.46902 * 111.00164 * 189.99870 * 7 6 5 9 9 C 1.53236 * 109.33995 * 187.24999 * 8 7 6 10 10 N 1.47080 * 108.52246 * 306.16679 * 9 8 7 11 11 C 1.34769 * 120.88293 * 231.18561 * 10 9 8 12 12 O 1.21689 * 120.00395 * 5.23485 * 11 10 9 13 13 C 1.46375 * 120.00223 * 185.23035 * 11 10 9 14 14 H 1.08006 * 119.99799 * 354.99400 * 13 11 10 15 15 C 1.40045 * 120.00306 * 174.72056 * 13 11 10 16 16 N 1.30675 * 120.00198 * 0.02562 * 15 13 11 17 17 Si 1.86799 * 120.00204 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.46934 * 60.00142 * 17 15 13 19 19 H 1.48502 * 109.47317 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47632 * 300.00490 * 17 15 13 21 21 C 1.47086 * 118.23376 * 51.46061 * 10 9 8 22 22 C 1.46902 * 110.99567 * 314.29563 * 7 6 5 23 23 O 1.34296 * 108.42235 * 359.62565 * 5 4 3 24 24 H 1.08998 * 109.47449 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46859 * 300.00538 * 1 2 3 26 26 H 1.08998 * 109.46824 * 60.00537 * 1 2 3 27 27 H 1.08008 * 126.57678 * 359.97438 * 3 2 1 28 28 H 1.07996 * 126.58276 * 180.23474 * 4 3 2 29 29 H 1.08996 * 109.47589 * 329.71720 * 6 5 4 30 30 H 1.09001 * 109.47289 * 209.71413 * 6 5 4 31 31 H 1.08998 * 109.49453 * 67.28792 * 8 7 6 32 32 H 1.09003 * 109.49212 * 307.21061 * 8 7 6 33 33 H 1.09000 * 109.62661 * 186.45695 * 9 8 7 34 34 H 1.09002 * 109.79027 * 65.97187 * 9 8 7 35 35 H 0.96989 * 120.00376 * 180.02562 * 16 15 13 36 36 H 1.08995 * 109.62802 * 68.25347 * 21 10 9 37 37 H 1.08997 * 109.62711 * 188.83146 * 21 10 9 38 38 H 1.08998 * 109.49642 * 292.70383 * 22 7 6 39 39 H 1.08998 * 109.49127 * 52.76136 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0910 0.0000 4 6 3.6309 0.6320 0.0059 5 6 3.5813 -0.7123 0.0009 6 6 4.7706 -1.6379 0.0019 7 7 5.1560 -1.9384 1.3873 8 6 6.4455 -2.6404 1.4345 9 6 6.7239 -3.0942 2.8714 10 7 6.6189 -1.9261 3.7590 11 6 7.6035 -1.6282 4.6297 12 8 8.6364 -2.2715 4.6238 13 6 7.4305 -0.5306 5.5826 14 1 6.5492 0.0919 5.5352 15 6 8.4050 -0.2913 6.5595 16 7 9.4691 -1.0474 6.6201 17 14 8.1846 1.1098 7.7751 18 1 6.9391 0.8968 8.5555 19 1 9.3468 1.1515 8.6986 20 1 8.0927 2.3954 7.0376 21 6 5.4081 -1.0952 3.6753 22 6 5.1842 -0.7167 2.2026 23 8 2.2924 -1.0895 0.0006 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 1.9666 2.1204 -0.0004 28 1 4.5212 1.2432 0.0111 29 1 5.6043 -1.1590 -0.5114 30 1 4.5110 -2.5636 -0.5118 31 1 7.2379 -1.9682 1.1054 32 1 6.4103 -3.5104 0.7787 33 1 7.7282 -3.5132 2.9350 34 1 5.9937 -3.8468 3.1688 35 1 10.1438 -0.8819 7.2969 36 1 4.5516 -1.6579 4.0463 37 1 5.5420 -0.1920 4.2705 38 1 5.9941 -0.0713 1.8628 39 1 4.2344 -0.1913 2.1034 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895068377.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:21:05 Heat of formation + Delta-G solvation = -30.072414 kcal Electronic energy + Delta-G solvation = -21750.014995 eV Core-core repulsion = 18465.666705 eV Total energy + Delta-G solvation = -3284.348290 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.57258 -40.44868 -38.45866 -35.47435 -34.63344 -34.08638 -32.99274 -31.93959 -30.05222 -28.52076 -26.88173 -24.85173 -24.29804 -22.67313 -22.38344 -21.04628 -20.56525 -18.57601 -17.90779 -17.46897 -17.27359 -16.40594 -16.06236 -16.00534 -15.78091 -15.65379 -15.43447 -14.84371 -14.40852 -14.20281 -13.77280 -13.73586 -13.70084 -13.48100 -13.24098 -13.07864 -12.84614 -12.72335 -12.68408 -12.49218 -12.24973 -12.03349 -11.97818 -11.82944 -10.92654 -10.76162 -9.81396 -9.60985 -9.17801 -9.01714 -8.30174 -6.85540 0.71711 1.39195 1.42625 1.54212 1.64124 1.98737 2.23040 2.44547 2.72336 3.01008 3.57774 3.64679 3.94781 4.02437 4.08711 4.12769 4.17843 4.31237 4.36521 4.44660 4.56126 4.61192 4.64979 4.76540 4.77383 4.85181 4.89245 4.92597 4.94799 5.09171 5.14511 5.29871 5.36245 5.64586 5.70466 5.90105 5.94778 6.11225 6.26519 6.39405 6.86514 7.39703 8.44653 8.65857 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022787 B = 0.004274 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.501531 B = 6550.165926 C = 7433.820477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.022 4.022 3 C -0.225 4.225 4 C -0.208 4.208 5 C -0.022 4.022 6 C 0.134 3.866 7 N -0.537 5.537 8 C 0.059 3.941 9 C 0.121 3.879 10 N -0.648 5.648 11 C 0.541 3.459 12 O -0.632 6.632 13 C -0.571 4.571 14 H 0.092 0.908 15 C 0.030 3.970 16 N -0.823 5.823 17 Si 0.995 3.005 18 H -0.253 1.253 19 H -0.274 1.274 20 H -0.254 1.254 21 C 0.127 3.873 22 C 0.051 3.949 23 O -0.185 6.185 24 H 0.078 0.922 25 H 0.099 0.901 26 H 0.103 0.897 27 H 0.166 0.834 28 H 0.150 0.850 29 H 0.075 0.925 30 H 0.107 0.893 31 H 0.026 0.974 32 H 0.112 0.888 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.274 0.726 36 H 0.057 0.943 37 H 0.086 0.914 38 H 0.026 0.974 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.263 4.756 -13.781 22.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.072 4.072 3 C -0.243 4.243 4 C -0.228 4.228 5 C -0.072 4.072 6 C 0.008 3.992 7 N -0.263 5.263 8 C -0.069 4.069 9 C -0.003 4.003 10 N -0.385 5.385 11 C 0.348 3.652 12 O -0.519 6.519 13 C -0.607 4.607 14 H 0.110 0.890 15 C -0.186 4.186 16 N -0.452 5.452 17 Si 0.814 3.186 18 H -0.177 1.177 19 H -0.199 1.199 20 H -0.177 1.177 21 C 0.004 3.996 22 C -0.078 4.078 23 O -0.082 6.082 24 H 0.097 0.903 25 H 0.117 0.883 26 H 0.122 0.878 27 H 0.184 0.816 28 H 0.168 0.832 29 H 0.093 0.907 30 H 0.125 0.875 31 H 0.044 0.956 32 H 0.130 0.870 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.104 0.896 38 H 0.045 0.955 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -16.990 3.726 -13.523 22.032 hybrid contribution 1.121 1.004 0.305 1.535 sum -15.869 4.730 -13.218 21.188 Atomic orbital electron populations 1.20478 0.82583 1.04720 1.05048 1.23217 0.95568 0.83734 1.04669 1.21823 0.92179 1.00507 1.09832 1.21830 0.99141 0.93882 1.07944 1.22242 0.83168 0.94487 1.07313 1.20581 0.90468 0.98348 0.89793 1.62084 1.30350 1.23822 1.10040 1.22381 0.88577 0.99129 0.96841 1.21333 1.00710 0.88932 0.89293 1.48138 1.20183 1.29389 1.40757 1.18651 0.81456 0.84769 0.80369 1.90531 1.30224 1.57058 1.74111 1.21471 1.08188 1.15783 1.15262 0.89011 1.26990 0.93152 0.99119 0.99288 1.70178 1.08152 1.36357 1.30549 0.85110 0.78938 0.77457 0.77067 1.17695 1.19885 1.17750 1.21703 0.86666 0.95543 0.95730 1.22598 1.01068 0.90952 0.93141 1.83974 1.16607 1.36070 1.71525 0.90321 0.88296 0.87840 0.81620 0.83200 0.90706 0.87519 0.95582 0.87031 0.92133 0.92149 0.91566 0.92476 0.89617 0.95530 0.88747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.84 10.42 71.24 0.74 -0.10 16 2 C -0.02 -0.44 7.32 24.83 0.18 -0.26 16 3 C -0.22 -4.62 10.81 22.19 0.24 -4.38 16 4 C -0.21 -4.84 9.09 22.19 0.20 -4.64 16 5 C -0.02 -0.55 5.50 24.83 0.14 -0.41 16 6 C 0.13 3.16 5.81 85.56 0.50 3.66 16 7 N -0.54 -15.86 4.77 -898.88 -4.29 -20.15 16 8 C 0.06 1.85 5.58 86.38 0.48 2.33 16 9 C 0.12 4.94 6.61 86.35 0.57 5.52 16 10 N -0.65 -30.93 3.00 -822.14 -2.47 -33.40 16 11 C 0.54 32.34 7.62 86.36 0.66 33.00 16 12 O -0.63 -43.27 14.49 -4.31 -0.06 -43.33 16 13 C -0.57 -32.78 8.86 24.83 0.22 -32.56 16 14 H 0.09 4.71 5.74 -2.91 -0.02 4.70 16 15 C 0.03 1.66 5.50 85.30 0.47 2.13 16 16 N -0.82 -51.02 11.84 21.83 0.26 -50.77 16 17 Si 1.00 41.16 29.56 68.60 2.03 43.18 16 18 H -0.25 -9.81 7.11 99.48 0.71 -9.11 16 19 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 20 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 21 C 0.13 4.97 6.50 86.50 0.56 5.53 16 22 C 0.05 1.65 4.95 86.54 0.43 2.08 16 23 O -0.18 -4.73 10.65 -2.45 -0.03 -4.76 16 24 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.17 2.59 8.06 -2.91 -0.02 2.56 16 28 H 0.15 3.25 8.06 -2.91 -0.02 3.23 16 29 H 0.08 1.60 8.08 -2.39 -0.02 1.58 16 30 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.11 2.72 8.11 -2.39 -0.02 2.70 16 33 H 0.06 2.79 7.04 -2.39 -0.02 2.77 16 34 H 0.06 2.31 8.14 -2.39 -0.02 2.30 16 35 H 0.27 15.43 8.29 -92.72 -0.77 14.66 16 36 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.09 3.46 5.46 -2.39 -0.01 3.44 16 38 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.09 2.81 5.55 -2.39 -0.01 2.80 16 Total: -1.00 -78.43 319.72 1.88 -76.55 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: 1.05 Total: 20.78 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: 5.39 Total: 11.89 kcal Atomic # 7 Polarization: -97.82 SS G_CDS: -6.50 Total: -104.32 kcal Atomic # 8 Polarization: -48.00 SS G_CDS: -0.09 Total: -48.09 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.18 kcal Total: -78.43 1.88 -76.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895068377.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.475 kcal (2) G-P(sol) polarization free energy of solvation -78.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds