Wall clock time and date at job start Tue Mar 31 2020 00:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38224 * 119.62022 * 2 1 4 4 C 1.38630 * 119.16347 * 179.97438 * 3 2 1 5 5 C 1.38675 * 118.41860 * 0.25530 * 4 3 2 6 6 C 1.38181 * 119.15910 * 359.47628 * 5 4 3 7 7 C 1.50701 * 119.61258 * 180.25426 * 6 5 4 8 8 O 1.42893 * 109.47432 * 0.27827 * 7 6 5 9 9 N 1.41604 * 114.00601 * 180.02562 * 8 7 6 10 10 C 1.34769 * 120.00329 * 179.97438 * 9 8 7 11 11 O 1.21277 * 120.00172 * 0.02562 * 10 9 8 12 12 C 1.50706 * 119.99904 * 179.97438 * 10 9 8 13 13 C 1.53001 * 109.47001 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.46727 * 180.02562 * 13 12 10 15 15 C 1.50703 * 109.47075 * 179.97438 * 14 13 12 16 16 H 1.08007 * 119.99677 * 359.97438 * 15 14 13 17 17 C 1.37870 * 120.00463 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99751 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00378 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46913 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47354 * 120.00308 * 19 17 15 22 22 H 1.48503 * 109.47281 * 240.00224 * 19 17 15 23 23 N 1.31857 * 119.61823 * 179.97438 * 2 1 3 24 24 H 1.09007 * 109.46662 * 89.99795 * 1 2 3 25 25 H 1.08999 * 109.47158 * 209.99996 * 1 2 3 26 26 H 1.08991 * 109.47069 * 330.00334 * 1 2 3 27 27 H 1.07998 * 120.41893 * 359.97438 * 3 2 1 28 28 H 1.08002 * 120.78834 * 179.97438 * 4 3 2 29 29 H 1.07999 * 120.41613 * 179.75147 * 5 4 3 30 30 H 1.08998 * 109.47272 * 120.28482 * 7 6 5 31 31 H 1.09003 * 109.47234 * 240.27838 * 7 6 5 32 32 H 0.97005 * 119.99447 * 359.97438 * 9 8 7 33 33 H 1.08999 * 109.46852 * 300.00390 * 12 10 9 34 34 H 1.09006 * 109.47027 * 60.00160 * 12 10 9 35 35 H 1.08999 * 109.46995 * 300.00112 * 13 12 10 36 36 H 1.09000 * 109.47042 * 60.00408 * 13 12 10 37 37 H 1.08999 * 109.47333 * 299.99732 * 14 13 12 38 38 H 1.08992 * 109.47325 * 60.00032 * 14 13 12 39 39 H 0.97001 * 120.00074 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5764 1.1906 0.0005 5 6 4.2267 -0.0343 -0.0044 6 6 3.4766 -1.1948 0.0014 7 6 4.1727 -2.5314 0.0020 8 8 5.5876 -2.3317 0.0025 9 7 6.3388 -3.5320 0.0025 10 6 7.6856 -3.4840 0.0024 11 8 8.2543 -2.4129 0.0028 12 6 8.4851 -4.7616 0.0029 13 6 9.9785 -4.4287 0.0034 14 6 10.7900 -5.7257 0.0033 15 6 12.2610 -5.3979 0.0031 16 1 12.5845 -4.3674 0.0026 17 6 13.1936 -6.4132 0.0035 18 7 12.7996 -7.6680 0.0036 19 14 15.0168 -6.0069 0.0040 20 1 15.1954 -4.5326 0.0032 21 1 15.6520 -6.5823 1.2166 22 1 15.6527 -6.5826 -1.2083 23 7 2.1587 -1.1463 0.0005 24 1 -0.3633 0.0000 -1.0278 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5137 27 1 1.6508 2.1373 -0.0004 28 1 4.1366 2.1139 0.0001 29 1 5.3056 -0.0805 -0.0081 30 1 3.8843 -3.0909 0.8919 31 1 3.8851 -3.0912 -0.8880 32 1 5.8839 -4.3888 0.0025 33 1 8.2422 -5.3417 0.8932 34 1 8.2422 -5.3426 -0.8868 35 1 10.2216 -3.8483 -0.8867 36 1 10.2210 -3.8480 0.8933 37 1 10.5470 -6.3065 0.8931 38 1 10.5474 -6.3061 -0.8868 39 1 13.4557 -8.3824 0.0035 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000898930430.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:52 Heat of formation + Delta-G solvation = -14.570861 kcal Electronic energy + Delta-G solvation = -19887.948113 eV Core-core repulsion = 16604.272020 eV Total energy + Delta-G solvation = -3283.676093 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.70348 -39.35787 -37.41733 -34.21844 -33.78364 -33.05683 -32.31573 -31.59115 -28.61823 -27.60930 -26.68404 -23.85732 -22.86234 -22.15121 -20.94459 -19.85327 -18.20825 -17.18778 -16.64746 -16.29965 -16.22151 -16.10408 -15.41829 -15.25409 -14.57264 -14.47470 -14.25064 -13.77304 -13.40993 -13.37182 -12.79089 -12.67948 -12.62102 -12.30089 -12.02878 -11.85069 -11.58206 -11.29692 -10.83359 -10.65296 -10.52119 -10.16648 -9.87374 -9.77045 -9.71043 -9.34200 -9.18303 -9.04483 -8.90768 -8.33032 -5.98562 -3.99836 0.70328 0.91830 1.71300 2.85866 3.33896 3.34221 3.41315 3.47110 3.69219 4.27161 4.34406 4.48667 4.51348 4.66223 4.78928 4.93539 4.94841 5.00432 5.13312 5.18655 5.25126 5.31174 5.37856 5.59907 5.62077 5.63712 5.80695 5.89009 6.13452 6.33120 6.67830 6.72504 6.87596 7.12728 7.33352 7.57312 7.69468 7.81071 8.01899 8.41149 8.45665 9.07365 9.64330 11.12941 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.059881 B = 0.002197 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.478036 B =12740.145077 C =13171.269855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.129 3.871 3 C -0.173 4.173 4 C -0.069 4.069 5 C -0.154 4.154 6 C 0.134 3.866 7 C 0.087 3.913 8 O -0.149 6.149 9 N -0.602 5.602 10 C 0.524 3.476 11 O -0.517 6.517 12 C -0.123 4.123 13 C -0.096 4.096 14 C 0.020 3.980 15 C -0.517 4.517 16 H 0.057 0.943 17 C 0.055 3.945 18 N -0.897 5.897 19 Si 0.892 3.108 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.284 1.284 23 N -0.481 5.481 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.136 0.864 28 H 0.138 0.862 29 H 0.147 0.853 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.407 0.593 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.017 0.983 38 H 0.017 0.983 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.006 12.878 -0.019 29.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.009 4.009 3 C -0.193 4.193 4 C -0.095 4.095 5 C -0.174 4.174 6 C -0.004 4.004 7 C 0.009 3.991 8 O -0.153 6.153 9 N -0.307 5.307 10 C 0.312 3.688 11 O -0.390 6.390 12 C -0.164 4.164 13 C -0.134 4.134 14 C -0.017 4.017 15 C -0.556 4.556 16 H 0.075 0.925 17 C -0.146 4.146 18 N -0.537 5.537 19 Si 0.720 3.280 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.211 1.211 23 N -0.193 5.193 24 H 0.097 0.903 25 H 0.096 0.904 26 H 0.094 0.906 27 H 0.154 0.846 28 H 0.156 0.844 29 H 0.165 0.835 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.247 0.753 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.036 0.964 38 H 0.036 0.964 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -25.868 12.915 -0.017 28.913 hybrid contribution 0.926 0.450 -0.013 1.030 sum -24.942 13.365 -0.030 28.297 Atomic orbital electron populations 1.20714 0.88504 1.03582 1.03204 1.21199 0.96932 0.87860 0.94921 1.21995 0.95034 0.99306 1.02971 1.21664 0.94395 0.98524 0.94939 1.22040 1.02595 0.92453 1.00311 1.20424 0.89425 0.93934 0.96619 1.21256 0.80698 0.94139 1.03036 1.90508 1.15255 1.12020 1.97472 1.48004 1.03481 0.99435 1.79801 1.21657 0.78714 0.93290 0.75093 1.90707 1.69166 1.31284 1.47835 1.21866 0.97566 0.92476 1.04444 1.21516 0.88813 1.00966 1.02122 1.19145 0.94168 0.91112 0.97296 1.21298 0.91319 0.92875 1.50078 0.92450 1.25020 0.99099 0.95064 0.95382 1.69969 1.33830 0.98659 1.51247 0.86527 0.85367 0.78584 0.77505 1.19669 1.21052 1.21058 1.66982 1.08637 1.30170 1.13496 0.90308 0.90369 0.90579 0.84624 0.84377 0.83497 0.89798 0.89803 0.75286 0.88701 0.88701 0.92374 0.92368 0.96438 0.96440 0.93111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.58 10.17 36.01 0.37 -0.21 16 2 C 0.13 1.15 6.78 -82.59 -0.56 0.59 16 3 C -0.17 -1.35 9.74 -39.44 -0.38 -1.74 16 4 C -0.07 -0.61 10.18 -39.27 -0.40 -1.01 16 5 C -0.15 -1.68 9.41 -39.44 -0.37 -2.06 16 6 C 0.13 1.50 6.78 -82.59 -0.56 0.94 16 7 C 0.09 0.87 6.77 36.01 0.24 1.11 16 8 O -0.15 -1.98 9.56 -29.66 -0.28 -2.27 16 9 N -0.60 -7.52 6.39 31.22 0.20 -7.32 16 10 C 0.52 8.51 7.97 -10.99 -0.09 8.42 16 11 O -0.52 -10.81 16.39 -12.63 -0.21 -11.02 16 12 C -0.12 -1.92 5.70 -27.88 -0.16 -2.07 16 13 C -0.10 -2.01 4.44 -26.73 -0.12 -2.13 16 14 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 15 C -0.52 -14.80 9.11 -34.44 -0.31 -15.11 16 16 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 17 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 18 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 19 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 20 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 N -0.48 -5.27 10.19 -5.74 -0.06 -5.33 16 24 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.08 0.28 8.08 -51.93 -0.42 -0.14 16 27 H 0.14 0.67 8.06 -52.49 -0.42 0.24 16 28 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 29 H 0.15 1.75 7.00 -52.49 -0.37 1.38 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.41 3.38 8.54 -40.82 -0.35 3.04 16 33 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16 36 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 341.28 15.07 5.14 5.14 Total: -1.00 -35.53 341.28 -7.82 -43.35 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -5.75 Total: -1.96 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: -2.58 Total: -11.41 kcal Atomic # 7 Polarization: -39.60 SS G_CDS: 0.88 Total: -38.72 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: -0.49 Total: -13.28 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -35.53 -7.82 -43.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898930430.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.777 kcal (2) G-P(sol) polarization free energy of solvation -35.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds