Wall clock time and date at job start Tue Mar 31 2020 00:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38224 * 119.62022 * 2 1 4 4 C 1.38630 * 119.16347 * 179.97438 * 3 2 1 5 5 C 1.38675 * 118.41860 * 0.25530 * 4 3 2 6 6 C 1.38181 * 119.15910 * 359.47628 * 5 4 3 7 7 C 1.50701 * 119.61258 * 180.25426 * 6 5 4 8 8 O 1.42893 * 109.47432 * 0.27827 * 7 6 5 9 9 N 1.41604 * 114.00601 * 180.02562 * 8 7 6 10 10 C 1.34769 * 120.00329 * 179.97438 * 9 8 7 11 11 O 1.21277 * 120.00172 * 0.02562 * 10 9 8 12 12 C 1.50706 * 119.99904 * 179.97438 * 10 9 8 13 13 C 1.53001 * 109.47001 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.46727 * 180.02562 * 13 12 10 15 15 C 1.50703 * 109.47075 * 179.97438 * 14 13 12 16 16 H 1.08007 * 119.99677 * 359.97438 * 15 14 13 17 17 C 1.37870 * 120.00463 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99751 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00378 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46913 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47354 * 120.00308 * 19 17 15 22 22 H 1.48503 * 109.47281 * 240.00224 * 19 17 15 23 23 N 1.31857 * 119.61823 * 179.97438 * 2 1 3 24 24 H 1.09007 * 109.46662 * 89.99795 * 1 2 3 25 25 H 1.08999 * 109.47158 * 209.99996 * 1 2 3 26 26 H 1.08991 * 109.47069 * 330.00334 * 1 2 3 27 27 H 1.07998 * 120.41893 * 359.97438 * 3 2 1 28 28 H 1.08002 * 120.78834 * 179.97438 * 4 3 2 29 29 H 1.07999 * 120.41613 * 179.75147 * 5 4 3 30 30 H 1.08998 * 109.47272 * 120.28482 * 7 6 5 31 31 H 1.09003 * 109.47234 * 240.27838 * 7 6 5 32 32 H 0.97005 * 119.99447 * 359.97438 * 9 8 7 33 33 H 1.08999 * 109.46852 * 300.00390 * 12 10 9 34 34 H 1.09006 * 109.47027 * 60.00160 * 12 10 9 35 35 H 1.08999 * 109.46995 * 300.00112 * 13 12 10 36 36 H 1.09000 * 109.47042 * 60.00408 * 13 12 10 37 37 H 1.08999 * 109.47333 * 299.99732 * 14 13 12 38 38 H 1.08992 * 109.47325 * 60.00032 * 14 13 12 39 39 H 0.97001 * 120.00074 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5764 1.1906 0.0005 5 6 4.2267 -0.0343 -0.0044 6 6 3.4766 -1.1948 0.0014 7 6 4.1727 -2.5314 0.0020 8 8 5.5876 -2.3317 0.0025 9 7 6.3388 -3.5320 0.0025 10 6 7.6856 -3.4840 0.0024 11 8 8.2543 -2.4129 0.0028 12 6 8.4851 -4.7616 0.0029 13 6 9.9785 -4.4287 0.0034 14 6 10.7900 -5.7257 0.0033 15 6 12.2610 -5.3979 0.0031 16 1 12.5845 -4.3674 0.0026 17 6 13.1936 -6.4132 0.0035 18 7 12.7996 -7.6680 0.0036 19 14 15.0168 -6.0069 0.0040 20 1 15.1954 -4.5326 0.0032 21 1 15.6520 -6.5823 1.2166 22 1 15.6527 -6.5826 -1.2083 23 7 2.1587 -1.1463 0.0005 24 1 -0.3633 0.0000 -1.0278 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5137 27 1 1.6508 2.1373 -0.0004 28 1 4.1366 2.1139 0.0001 29 1 5.3056 -0.0805 -0.0081 30 1 3.8843 -3.0909 0.8919 31 1 3.8851 -3.0912 -0.8880 32 1 5.8839 -4.3888 0.0025 33 1 8.2422 -5.3417 0.8932 34 1 8.2422 -5.3426 -0.8868 35 1 10.2216 -3.8483 -0.8867 36 1 10.2210 -3.8480 0.8933 37 1 10.5470 -6.3065 0.8931 38 1 10.5474 -6.3061 -0.8868 39 1 13.4557 -8.3824 0.0035 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898930430.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:51 Heat of formation + Delta-G solvation = -37.572759 kcal Electronic energy + Delta-G solvation = -19888.945550 eV Core-core repulsion = 16604.272020 eV Total energy + Delta-G solvation = -3284.673530 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.40846 -40.62452 -38.47679 -36.09573 -34.61111 -34.05190 -33.73965 -32.85811 -29.77323 -28.87679 -27.45687 -25.73300 -23.56068 -22.87268 -22.54494 -21.32657 -19.23623 -18.55314 -18.03536 -17.37488 -17.20517 -17.12353 -16.48362 -16.45954 -16.14535 -15.43806 -15.36545 -14.81402 -14.78955 -14.27288 -14.02073 -13.78906 -13.47786 -13.44500 -13.11226 -13.06605 -12.68274 -12.64251 -12.51680 -12.38734 -12.34227 -11.53385 -11.46916 -11.24862 -10.96059 -10.87547 -10.55502 -10.52155 -10.08397 -9.79757 -8.18611 -6.27568 0.00458 0.22360 0.68163 1.40494 1.41376 1.54730 1.58225 2.43045 2.64770 2.94241 3.14780 3.51869 3.62117 3.76140 3.84918 4.00444 4.16952 4.20491 4.20748 4.28426 4.30416 4.54473 4.62425 4.75894 4.78353 4.80257 4.98543 5.10607 5.14206 5.18041 5.20945 5.22744 5.56843 5.65822 5.70144 5.79018 5.90298 6.27466 6.32441 6.86370 6.88140 7.24699 7.40862 8.92886 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.059881 B = 0.002197 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.478036 B =12740.145077 C =13171.269855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.117 3.883 3 C -0.169 4.169 4 C -0.072 4.072 5 C -0.179 4.179 6 C 0.116 3.884 7 C 0.087 3.913 8 O -0.169 6.169 9 N -0.582 5.582 10 C 0.528 3.472 11 O -0.573 6.573 12 C -0.112 4.112 13 C -0.085 4.085 14 C 0.025 3.975 15 C -0.546 4.546 16 H 0.050 0.950 17 C 0.003 3.997 18 N -0.928 5.928 19 Si 0.960 3.040 20 H -0.269 1.269 21 H -0.276 1.276 22 H -0.276 1.276 23 N -0.501 5.501 24 H 0.089 0.911 25 H 0.073 0.927 26 H 0.100 0.900 27 H 0.170 0.830 28 H 0.160 0.840 29 H 0.128 0.872 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.430 0.570 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.042 0.958 36 H 0.042 0.958 37 H 0.006 0.994 38 H 0.006 0.994 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.582 13.438 -0.020 30.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.021 4.021 3 C -0.188 4.188 4 C -0.098 4.098 5 C -0.199 4.199 6 C -0.022 4.022 7 C 0.010 3.990 8 O -0.174 6.174 9 N -0.287 5.287 10 C 0.317 3.683 11 O -0.450 6.450 12 C -0.152 4.152 13 C -0.123 4.123 14 C -0.012 4.012 15 C -0.584 4.584 16 H 0.069 0.931 17 C -0.195 4.195 18 N -0.568 5.568 19 Si 0.785 3.215 20 H -0.193 1.193 21 H -0.202 1.202 22 H -0.202 1.202 23 N -0.213 5.213 24 H 0.107 0.893 25 H 0.092 0.908 26 H 0.118 0.882 27 H 0.187 0.813 28 H 0.177 0.823 29 H 0.146 0.854 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.274 0.726 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.024 0.976 38 H 0.024 0.976 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -27.501 13.436 -0.019 30.607 hybrid contribution 1.284 0.313 -0.013 1.322 sum -26.216 13.749 -0.032 29.603 Atomic orbital electron populations 1.20812 0.86191 1.04587 1.04142 1.21870 0.98565 0.87801 0.93884 1.22373 0.94650 1.00388 1.01415 1.21982 0.95258 0.98514 0.94038 1.22025 1.01836 0.93741 1.02269 1.20567 0.89876 0.94284 0.97448 1.21403 0.78848 0.94329 1.04417 1.90524 1.17086 1.12193 1.97553 1.47563 1.02835 1.00503 1.77779 1.21568 0.79717 0.92493 0.74484 1.90692 1.70581 1.33027 1.50712 1.21674 0.93752 0.92679 1.07109 1.21219 0.92266 0.98196 1.00666 1.19032 0.93497 0.92705 0.95979 1.21726 0.93451 0.92764 1.50432 0.93134 1.25871 1.03852 0.94930 0.94844 1.70062 1.35506 0.99513 1.51737 0.85475 0.79654 0.78454 0.77935 1.19342 1.20156 1.20167 1.67030 1.08365 1.31424 1.14497 0.89261 0.90780 0.88183 0.81266 0.82287 0.85370 0.88318 0.88322 0.72633 0.86007 0.86003 0.93886 0.93878 0.97589 0.97593 0.92709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.89 10.17 71.24 0.72 -0.16 16 2 C 0.12 1.89 6.78 42.55 0.29 2.18 16 3 C -0.17 -2.27 9.74 22.36 0.22 -2.05 16 4 C -0.07 -1.19 10.18 22.47 0.23 -0.96 16 5 C -0.18 -3.97 9.41 22.36 0.21 -3.76 16 6 C 0.12 2.57 6.78 42.54 0.29 2.86 16 7 C 0.09 1.69 6.77 71.24 0.48 2.17 16 8 O -0.17 -4.46 9.56 -21.40 -0.20 -4.67 16 9 N -0.58 -13.83 6.39 -173.54 -1.11 -14.94 16 10 C 0.53 16.89 7.97 87.66 0.70 17.59 16 11 O -0.57 -24.48 16.39 14.37 0.24 -24.24 16 12 C -0.11 -3.36 5.70 29.85 0.17 -3.19 16 13 C -0.09 -3.62 4.44 30.59 0.14 -3.49 16 14 C 0.02 1.28 4.97 29.85 0.15 1.43 16 15 C -0.55 -31.71 9.11 25.60 0.23 -31.47 16 16 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 17 C 0.00 0.17 5.46 84.65 0.46 0.63 16 18 N -0.93 -55.63 13.29 21.44 0.28 -55.34 16 19 Si 0.96 45.04 29.54 68.60 2.03 47.07 16 20 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 21 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 23 N -0.50 -10.55 10.19 -172.08 -1.75 -12.31 16 24 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 25 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.10 0.40 8.08 -2.39 -0.02 0.38 16 27 H 0.17 1.05 8.06 -2.91 -0.02 1.02 16 28 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 29 H 0.13 3.26 7.00 -2.91 -0.02 3.24 16 30 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.43 6.15 8.54 -92.70 -0.79 5.36 16 33 H 0.12 3.02 8.14 -2.39 -0.02 3.00 16 34 H 0.12 3.02 8.14 -2.38 -0.02 3.00 16 35 H 0.04 1.92 8.10 -2.39 -0.02 1.91 16 36 H 0.04 1.93 8.10 -2.39 -0.02 1.91 16 37 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 38 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 39 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -78.42 341.28 4.02 -74.40 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: 0.26 Total: 8.24 kcal Atomic # 6 Polarization: -22.51 SS G_CDS: 4.29 Total: -18.22 kcal Atomic # 7 Polarization: -80.01 SS G_CDS: -2.58 Total: -82.58 kcal Atomic # 8 Polarization: -28.94 SS G_CDS: 0.03 Total: -28.91 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -78.42 4.02 -74.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898930430.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.826 kcal (2) G-P(sol) polarization free energy of solvation -78.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds