Wall clock time and date at job start Tue Mar 31 2020 01:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36096 * 117.00239 * 2 1 4 4 C 1.35431 * 120.41384 * 0.25366 * 3 2 1 5 5 N 1.35868 * 120.60737 * 180.25934 * 4 3 2 6 6 C 1.46497 * 119.26829 * 179.76349 * 5 4 3 7 7 N 1.46506 * 109.47174 * 2.15483 * 6 5 4 8 8 C 1.36935 * 119.99905 * 89.51172 * 7 6 5 9 9 H 1.08004 * 119.99789 * 334.34370 * 8 7 6 10 10 C 1.38809 * 120.00040 * 154.34652 * 8 7 6 11 11 N 1.31619 * 119.99972 * 346.82561 * 10 8 7 12 12 Si 1.86796 * 120.00271 * 166.82723 * 10 8 7 13 13 H 1.48502 * 109.47197 * 270.00175 * 12 10 8 14 14 H 1.48507 * 109.47089 * 29.99660 * 12 10 8 15 15 H 1.48490 * 109.47370 * 149.99766 * 12 10 8 16 16 C 1.46500 * 119.99719 * 269.51112 * 7 6 5 17 17 C 1.52999 * 117.50482 * 5.03727 * 16 7 6 18 18 C 1.52995 * 117.50314 * 296.37593 * 16 7 6 19 19 C 1.35457 * 121.46487 * 359.47675 * 5 4 3 20 20 C 1.50700 * 119.60430 * 180.27999 * 19 5 4 21 21 C 1.35188 * 120.79422 * 0.26511 * 19 5 4 22 22 C 1.41284 * 119.32382 * 359.97438 * 21 19 5 23 23 O 1.22286 * 120.68510 * 180.02562 * 22 21 19 24 24 H 1.09002 * 109.46917 * 300.00293 * 1 2 3 25 25 H 1.08990 * 109.47213 * 60.00064 * 1 2 3 26 26 H 1.09004 * 109.47212 * 180.02562 * 1 2 3 27 27 H 1.08002 * 119.70003 * 0.02562 * 4 3 2 28 28 H 1.09007 * 109.47000 * 242.16127 * 6 5 4 29 29 H 1.08996 * 109.47597 * 122.15796 * 6 5 4 30 30 H 0.96996 * 120.00446 * 175.01993 * 11 10 8 31 31 H 1.09008 * 115.54702 * 150.70506 * 16 7 6 32 32 H 1.08998 * 117.49575 * 359.97438 * 17 16 7 33 33 H 1.08993 * 117.50316 * 145.01550 * 17 16 7 34 34 H 1.09006 * 117.50163 * 214.98670 * 18 16 7 35 35 H 1.09001 * 117.49680 * 359.97438 * 18 16 7 36 36 H 1.09003 * 109.47150 * 88.26289 * 20 19 5 37 37 H 1.09002 * 109.47433 * 208.26337 * 20 19 5 38 38 H 1.08999 * 109.47307 * 328.26252 * 20 19 5 39 39 H 1.08001 * 120.34665 * 179.97438 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0469 1.2126 0.0000 4 6 1.3175 2.3537 0.0052 5 7 1.9303 3.5664 -0.0001 6 6 1.1127 4.7820 0.0004 7 7 -0.3050 4.4170 0.0590 8 6 -0.9231 4.2643 1.2713 9 1 -0.3435 4.0001 2.1435 10 6 -2.2946 4.4489 1.3792 11 7 -2.9616 5.0165 0.3966 12 14 -3.1938 3.8919 2.9188 13 1 -3.6468 2.4881 2.7470 14 1 -2.2783 3.9773 4.0850 15 1 -4.3711 4.7673 3.1486 16 6 -1.0612 4.2155 -1.1795 17 6 -0.2886 4.2845 -2.4983 18 6 -1.2352 5.4212 -2.1051 19 6 3.2804 3.6764 -0.0001 20 6 3.9160 5.0428 0.0004 21 6 4.0645 2.5751 -0.0001 22 6 3.4624 1.2970 0.0003 23 8 4.1478 0.2843 0.0008 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 0.2389 2.2994 0.0097 28 1 1.3045 5.3492 -0.9104 29 1 1.3673 5.3908 0.8680 30 1 -3.9284 5.0804 0.4401 31 1 -1.8865 3.5063 -1.1162 32 1 0.7824 4.4802 -2.4445 33 1 -0.6057 3.6209 -3.3027 34 1 -2.1750 5.5051 -2.6511 35 1 -0.7875 6.3645 -1.7924 36 1 4.0410 5.3850 1.0277 37 1 4.8900 4.9907 -0.4863 38 1 3.2768 5.7410 -0.5400 39 1 5.1402 2.6712 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902077160.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:12 Heat of formation + Delta-G solvation = 22.764273 kcal Electronic energy + Delta-G solvation = -22814.926233 eV Core-core repulsion = 19532.869113 eV Total energy + Delta-G solvation = -3282.057120 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.79674 -38.32195 -37.39672 -36.65287 -33.56510 -32.44958 -31.74331 -29.97320 -27.55294 -26.84065 -25.61233 -23.81971 -22.45252 -21.55424 -21.12417 -19.98578 -18.08903 -17.56492 -16.93055 -15.72279 -15.64633 -15.26047 -15.06524 -14.83682 -14.40102 -14.17779 -13.80055 -13.71077 -13.29580 -13.03105 -12.63181 -12.56006 -12.47419 -11.90991 -11.88038 -11.53904 -11.20586 -11.07820 -10.86321 -10.83483 -10.67811 -10.51419 -10.39614 -10.02216 -9.50940 -8.93844 -8.81517 -8.54474 -7.38806 -6.92030 -6.22888 -3.83045 1.76816 1.97635 3.07191 3.18052 3.22001 3.23195 3.83573 4.04294 4.31295 4.63178 4.68391 4.74816 5.07131 5.17799 5.30959 5.41622 5.44060 5.53848 5.62024 5.64652 5.71923 5.74317 5.82797 5.84953 5.90407 5.94619 6.09746 6.21057 6.27381 6.43799 6.66275 6.74533 6.80423 7.03386 7.26522 7.35375 7.53927 7.80201 7.86169 8.66063 8.75430 9.23111 9.66603 10.79478 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015987 B = 0.007139 C = 0.006215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.022868 B = 3921.331102 C = 4504.239626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.299 6.299 3 C -0.069 4.069 4 C 0.059 3.941 5 N -0.458 5.458 6 C 0.320 3.680 7 N -0.541 5.541 8 C -0.300 4.300 9 H 0.078 0.922 10 C 0.029 3.971 11 N -0.876 5.876 12 Si 0.906 3.094 13 H -0.281 1.281 14 H -0.275 1.275 15 H -0.287 1.287 16 C 0.184 3.816 17 C -0.241 4.241 18 C -0.178 4.178 19 C 0.172 3.828 20 C -0.122 4.122 21 C -0.316 4.316 22 C 0.401 3.599 23 O -0.545 6.545 24 H 0.056 0.944 25 H 0.051 0.949 26 H 0.093 0.907 27 H 0.180 0.820 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.261 0.739 31 H 0.109 0.891 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.522 2.356 -2.723 5.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.212 6.212 3 C -0.118 4.118 4 C -0.069 4.069 5 N -0.152 5.152 6 C 0.112 3.888 7 N -0.258 5.258 8 C -0.428 4.428 9 H 0.096 0.904 10 C -0.174 4.174 11 N -0.515 5.515 12 Si 0.734 3.266 13 H -0.208 1.208 14 H -0.200 1.200 15 H -0.212 1.212 16 C 0.077 3.923 17 C -0.280 4.280 18 C -0.218 4.218 19 C 0.057 3.943 20 C -0.179 4.179 21 C -0.342 4.342 22 C 0.295 3.705 23 O -0.435 6.435 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.111 0.889 27 H 0.197 0.803 28 H 0.093 0.907 29 H 0.103 0.897 30 H 0.071 0.929 31 H 0.127 0.873 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.094 0.906 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 4.498 1.962 -2.680 5.592 hybrid contribution -1.052 0.091 0.681 1.256 sum 3.446 2.053 -2.000 4.482 Atomic orbital electron populations 1.23009 0.79673 1.03184 1.01504 1.86173 1.19879 1.25040 1.90059 1.20408 0.94712 0.84650 1.12040 1.21978 1.01028 0.83751 1.00146 1.45549 1.04850 1.08490 1.56350 1.21508 0.82706 0.83434 1.01136 1.43829 1.02948 1.75693 1.03293 1.19175 0.91591 1.45622 0.86422 0.90393 1.25112 0.97586 0.96775 0.97940 1.70063 1.07546 1.41076 1.32846 0.86248 0.79455 0.78444 0.82441 1.20774 1.19970 1.21243 1.20738 0.94156 0.98050 0.79398 1.23608 0.97619 1.05043 1.01724 1.22992 0.98860 0.94168 1.05748 1.20341 0.83160 0.97265 0.93502 1.21038 1.01425 0.91583 1.03865 1.21661 1.00391 0.91636 1.20533 1.16757 0.85978 0.89920 0.77806 1.90748 1.65812 1.38341 1.48600 0.92579 0.93086 0.88870 0.80334 0.90701 0.89724 0.92877 0.87303 0.90309 0.89890 0.90090 0.90364 0.89576 0.89524 0.90583 0.83985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.82 101.05 0.99 1.34 16 2 O -0.30 -6.06 10.34 -35.62 -0.37 -6.43 16 3 C -0.07 -1.40 6.71 -39.22 -0.26 -1.66 16 4 C 0.06 1.10 8.77 -16.77 -0.15 0.95 16 5 N -0.46 -7.60 3.01 -116.12 -0.35 -7.95 16 6 C 0.32 5.27 4.72 -63.75 -0.30 4.97 16 7 N -0.54 -10.78 1.63 -169.34 -0.28 -11.06 16 8 C -0.30 -6.78 8.92 -15.06 -0.13 -6.91 16 9 H 0.08 1.79 7.86 -52.48 -0.41 1.38 16 10 C 0.03 0.68 5.15 -17.43 -0.09 0.59 16 11 N -0.88 -21.25 11.01 55.49 0.61 -20.64 16 12 Si 0.91 18.99 29.58 -169.99 -5.03 13.96 16 13 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 14 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 15 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 16 C 0.18 3.59 3.76 -67.93 -0.26 3.33 16 17 C -0.24 -4.02 9.71 -26.70 -0.26 -4.28 16 18 C -0.18 -3.25 9.96 -26.70 -0.27 -3.51 16 19 C 0.17 2.55 6.65 -82.08 -0.55 2.00 16 20 C -0.12 -1.22 9.36 36.01 0.34 -0.89 16 21 C -0.32 -5.38 9.59 -39.51 -0.38 -5.76 16 22 C 0.40 8.51 6.77 -37.06 -0.25 8.26 16 23 O -0.55 -13.47 17.72 -10.92 -0.19 -13.66 16 24 H 0.06 0.90 7.65 -51.93 -0.40 0.50 16 25 H 0.05 0.77 7.68 -51.93 -0.40 0.37 16 26 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.18 3.46 3.96 -52.49 -0.21 3.26 16 28 H 0.08 1.12 5.53 -51.93 -0.29 0.83 16 29 H 0.08 1.35 7.87 -51.93 -0.41 0.94 16 30 H 0.26 6.23 8.32 -40.82 -0.34 5.89 16 31 H 0.11 2.36 7.47 -51.92 -0.39 1.97 16 32 H 0.08 1.27 6.31 -51.93 -0.33 0.94 16 33 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 35 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 36 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.09 0.72 8.06 -51.93 -0.42 0.30 16 38 H 0.08 0.70 6.57 -51.93 -0.34 0.36 16 39 H 0.14 2.13 8.06 -52.49 -0.42 1.71 16 LS Contribution 320.54 15.07 4.83 4.83 Total: -1.00 -29.02 320.54 -7.59 -36.61 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -5.26 Total: 5.89 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -1.56 Total: -1.57 kcal Atomic # 7 Polarization: -39.63 SS G_CDS: -0.01 Total: -39.64 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.56 Total: -20.09 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.96 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.02 -7.59 -36.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902077160.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.377 kcal (2) G-P(sol) polarization free energy of solvation -29.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds