Wall clock time and date at job start Tue Mar 31 2020 01:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36096 * 117.00239 * 2 1 4 4 C 1.35431 * 120.41384 * 0.25366 * 3 2 1 5 5 N 1.35868 * 120.60737 * 180.25934 * 4 3 2 6 6 C 1.46497 * 119.26829 * 179.76349 * 5 4 3 7 7 N 1.46506 * 109.47174 * 2.15483 * 6 5 4 8 8 C 1.36935 * 119.99905 * 89.51172 * 7 6 5 9 9 H 1.08004 * 119.99789 * 334.34370 * 8 7 6 10 10 C 1.38809 * 120.00040 * 154.34652 * 8 7 6 11 11 N 1.31619 * 119.99972 * 346.82561 * 10 8 7 12 12 Si 1.86796 * 120.00271 * 166.82723 * 10 8 7 13 13 H 1.48502 * 109.47197 * 270.00175 * 12 10 8 14 14 H 1.48507 * 109.47089 * 29.99660 * 12 10 8 15 15 H 1.48490 * 109.47370 * 149.99766 * 12 10 8 16 16 C 1.46500 * 119.99719 * 269.51112 * 7 6 5 17 17 C 1.52999 * 117.50482 * 5.03727 * 16 7 6 18 18 C 1.52995 * 117.50314 * 296.37593 * 16 7 6 19 19 C 1.35457 * 121.46487 * 359.47675 * 5 4 3 20 20 C 1.50700 * 119.60430 * 180.27999 * 19 5 4 21 21 C 1.35188 * 120.79422 * 0.26511 * 19 5 4 22 22 C 1.41284 * 119.32382 * 359.97438 * 21 19 5 23 23 O 1.22286 * 120.68510 * 180.02562 * 22 21 19 24 24 H 1.09002 * 109.46917 * 300.00293 * 1 2 3 25 25 H 1.08990 * 109.47213 * 60.00064 * 1 2 3 26 26 H 1.09004 * 109.47212 * 180.02562 * 1 2 3 27 27 H 1.08002 * 119.70003 * 0.02562 * 4 3 2 28 28 H 1.09007 * 109.47000 * 242.16127 * 6 5 4 29 29 H 1.08996 * 109.47597 * 122.15796 * 6 5 4 30 30 H 0.96996 * 120.00446 * 175.01993 * 11 10 8 31 31 H 1.09008 * 115.54702 * 150.70506 * 16 7 6 32 32 H 1.08998 * 117.49575 * 359.97438 * 17 16 7 33 33 H 1.08993 * 117.50316 * 145.01550 * 17 16 7 34 34 H 1.09006 * 117.50163 * 214.98670 * 18 16 7 35 35 H 1.09001 * 117.49680 * 359.97438 * 18 16 7 36 36 H 1.09003 * 109.47150 * 88.26289 * 20 19 5 37 37 H 1.09002 * 109.47433 * 208.26337 * 20 19 5 38 38 H 1.08999 * 109.47307 * 328.26252 * 20 19 5 39 39 H 1.08001 * 120.34665 * 179.97438 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0469 1.2126 0.0000 4 6 1.3175 2.3537 0.0052 5 7 1.9303 3.5664 -0.0001 6 6 1.1127 4.7820 0.0004 7 7 -0.3050 4.4170 0.0590 8 6 -0.9231 4.2643 1.2713 9 1 -0.3435 4.0001 2.1435 10 6 -2.2946 4.4489 1.3792 11 7 -2.9616 5.0165 0.3966 12 14 -3.1938 3.8919 2.9188 13 1 -3.6468 2.4881 2.7470 14 1 -2.2783 3.9773 4.0850 15 1 -4.3711 4.7673 3.1486 16 6 -1.0612 4.2155 -1.1795 17 6 -0.2886 4.2845 -2.4983 18 6 -1.2352 5.4212 -2.1051 19 6 3.2804 3.6764 -0.0001 20 6 3.9160 5.0428 0.0004 21 6 4.0645 2.5751 -0.0001 22 6 3.4624 1.2970 0.0003 23 8 4.1478 0.2843 0.0008 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 0.2389 2.2994 0.0097 28 1 1.3045 5.3492 -0.9104 29 1 1.3673 5.3908 0.8680 30 1 -3.9284 5.0804 0.4401 31 1 -1.8865 3.5063 -1.1162 32 1 0.7824 4.4802 -2.4445 33 1 -0.6057 3.6209 -3.3027 34 1 -2.1750 5.5051 -2.6511 35 1 -0.7875 6.3645 -1.7924 36 1 4.0410 5.3850 1.0277 37 1 4.8900 4.9907 -0.4863 38 1 3.2768 5.7410 -0.5400 39 1 5.1402 2.6712 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902077160.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:10 Heat of formation + Delta-G solvation = 7.845166 kcal Electronic energy + Delta-G solvation = -22815.573174 eV Core-core repulsion = 19532.869113 eV Total energy + Delta-G solvation = -3282.704061 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -42.22623 -39.79832 -38.88560 -38.19009 -35.12176 -33.87980 -33.14440 -31.54390 -28.81073 -28.08167 -27.14736 -25.39840 -23.88295 -22.96816 -22.48226 -21.51467 -19.61016 -19.03276 -18.39777 -17.12280 -17.09211 -16.88000 -16.58591 -16.37920 -15.76701 -15.61980 -15.31609 -15.05534 -14.80587 -14.51465 -13.84915 -13.62430 -13.58392 -13.42199 -13.20716 -12.98260 -12.84698 -12.55610 -12.24474 -12.23078 -12.19348 -12.10215 -11.88170 -11.59629 -10.99497 -10.62294 -10.40392 -9.87740 -9.01055 -8.44800 -7.97923 -5.58034 0.44398 0.44718 1.42939 1.50414 1.54044 1.78009 2.36114 2.48296 2.82205 3.06159 3.16728 3.46575 3.61149 3.89314 3.97233 4.19343 4.20597 4.28460 4.30072 4.34821 4.41515 4.50665 4.63242 4.66208 4.68560 4.78880 4.87080 4.95915 5.07423 5.15384 5.22294 5.35334 5.37483 5.45451 5.61905 5.90234 6.03685 6.27346 6.37063 6.96234 7.22315 7.56990 7.97708 9.01500 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015987 B = 0.007139 C = 0.006215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.022868 B = 3921.331102 C = 4504.239626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.326 6.326 3 C -0.091 4.091 4 C 0.071 3.929 5 N -0.453 5.453 6 C 0.322 3.678 7 N -0.553 5.553 8 C -0.294 4.294 9 H 0.072 0.928 10 C -0.009 4.009 11 N -0.897 5.897 12 Si 0.951 3.049 13 H -0.285 1.285 14 H -0.274 1.274 15 H -0.295 1.295 16 C 0.163 3.837 17 C -0.210 4.210 18 C -0.176 4.176 19 C 0.192 3.808 20 C -0.120 4.120 21 C -0.326 4.326 22 C 0.375 3.625 23 O -0.602 6.602 24 H 0.050 0.950 25 H 0.055 0.945 26 H 0.120 0.880 27 H 0.172 0.828 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.255 0.745 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.106 0.894 37 H 0.111 0.889 38 H 0.092 0.908 39 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.534 4.260 -3.109 7.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.239 6.239 3 C -0.141 4.141 4 C -0.058 4.058 5 N -0.146 5.146 6 C 0.115 3.885 7 N -0.269 5.269 8 C -0.422 4.422 9 H 0.090 0.910 10 C -0.210 4.210 11 N -0.538 5.538 12 Si 0.779 3.221 13 H -0.212 1.212 14 H -0.199 1.199 15 H -0.221 1.221 16 C 0.056 3.944 17 C -0.248 4.248 18 C -0.216 4.216 19 C 0.076 3.924 20 C -0.177 4.177 21 C -0.350 4.350 22 C 0.275 3.725 23 O -0.497 6.497 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.138 0.862 27 H 0.189 0.811 28 H 0.119 0.881 29 H 0.117 0.883 30 H 0.064 0.936 31 H 0.098 0.902 32 H 0.110 0.890 33 H 0.113 0.887 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.124 0.876 37 H 0.130 0.870 38 H 0.111 0.889 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 5.521 3.896 -3.068 7.421 hybrid contribution -1.389 -0.442 0.795 1.660 sum 4.132 3.454 -2.272 5.846 Atomic orbital electron populations 1.23191 0.77794 1.05034 1.01360 1.86131 1.21885 1.25579 1.90338 1.20552 0.94864 0.85205 1.13447 1.21831 1.00553 0.84093 0.99363 1.45612 1.05878 1.07854 1.55281 1.21807 0.80561 0.83009 1.03126 1.43827 1.04231 1.76308 1.02560 1.19230 0.91635 1.44134 0.87237 0.91039 1.25552 0.98333 0.97611 0.99459 1.70150 1.07102 1.42574 1.33925 0.85547 0.78300 0.77567 0.80637 1.21200 1.19927 1.22120 1.20557 0.94751 0.98577 0.80467 1.23575 0.97855 1.03562 0.99807 1.22923 0.99304 0.94054 1.05305 1.20989 0.81899 0.99198 0.90280 1.21256 1.02494 0.88267 1.05692 1.21742 1.01635 0.90401 1.21247 1.17430 0.86384 0.90996 0.77697 1.90705 1.66675 1.40111 1.52250 0.93165 0.92618 0.86151 0.81073 0.88067 0.88287 0.93571 0.90228 0.88985 0.88684 0.90545 0.90441 0.87577 0.87038 0.88906 0.82027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.67 9.82 113.37 1.11 1.78 16 2 O -0.33 -13.51 10.34 -79.75 -0.82 -14.34 16 3 C -0.09 -3.75 6.71 22.50 0.15 -3.60 16 4 C 0.07 2.58 8.77 83.42 0.73 3.31 16 5 N -0.45 -13.78 3.01 -521.28 -1.57 -15.34 16 6 C 0.32 9.46 4.72 170.96 0.81 10.26 16 7 N -0.55 -21.00 1.63 -689.67 -1.12 -22.12 16 8 C -0.29 -12.95 8.92 84.03 0.75 -12.20 16 9 H 0.07 3.20 7.86 -2.91 -0.02 3.18 16 10 C -0.01 -0.42 5.15 84.86 0.44 0.02 16 11 N -0.90 -43.45 11.01 21.65 0.24 -43.21 16 12 Si 0.95 39.00 29.58 68.60 2.03 41.03 16 13 H -0.29 -11.75 7.11 99.48 0.71 -11.05 16 14 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 15 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 16 C 0.16 6.17 3.76 44.99 0.17 6.34 16 17 C -0.21 -6.39 9.71 30.62 0.30 -6.09 16 18 C -0.18 -6.09 9.96 30.61 0.30 -5.78 16 19 C 0.19 5.00 6.65 41.30 0.27 5.27 16 20 C -0.12 -1.76 9.36 71.24 0.67 -1.10 16 21 C -0.33 -10.50 9.59 22.32 0.21 -10.28 16 22 C 0.38 16.10 6.77 23.90 0.16 16.26 16 23 O -0.60 -30.80 17.72 8.63 0.15 -30.65 16 24 H 0.05 1.63 7.65 -2.39 -0.02 1.61 16 25 H 0.06 1.69 7.68 -2.39 -0.02 1.67 16 26 H 0.12 3.07 8.14 -2.38 -0.02 3.05 16 27 H 0.17 6.56 3.96 -2.91 -0.01 6.55 16 28 H 0.10 2.52 5.53 -2.38 -0.01 2.51 16 29 H 0.10 2.71 7.87 -2.39 -0.02 2.69 16 30 H 0.25 12.27 8.32 -92.71 -0.77 11.50 16 31 H 0.08 3.48 7.47 -2.38 -0.02 3.46 16 32 H 0.09 2.57 6.31 -2.39 -0.02 2.55 16 33 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 34 H 0.08 2.69 8.14 -2.38 -0.02 2.67 16 35 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 36 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.11 1.20 8.06 -2.39 -0.02 1.18 16 38 H 0.09 1.13 6.57 -2.39 -0.02 1.11 16 39 H 0.16 4.48 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -64.79 320.54 6.04 -58.75 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: 1.06 Total: 21.68 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: 6.08 Total: 4.20 kcal Atomic # 7 Polarization: -78.22 SS G_CDS: -2.45 Total: -80.67 kcal Atomic # 8 Polarization: -44.32 SS G_CDS: -0.67 Total: -44.99 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 2.03 Total: 41.03 kcal Total: -64.79 6.04 -58.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902077160.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.597 kcal (2) G-P(sol) polarization free energy of solvation -64.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds