Wall clock time and date at job start Mon Mar 30 2020 23:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38259 * 120.00036 * 2 1 4 4 C 1.38212 * 120.00070 * 179.76653 * 3 2 1 5 5 C 1.38263 * 119.99580 * 0.50837 * 4 3 2 6 6 C 1.38217 * 120.00274 * 359.74597 * 5 4 3 7 7 C 1.50700 * 119.99985 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.47081 * 160.02649 * 7 6 5 9 9 O 1.42896 * 109.46703 * 40.02439 * 7 6 5 10 10 C 1.52993 * 109.46959 * 280.02389 * 7 6 5 11 11 N 1.46908 * 109.46912 * 184.99952 * 10 7 6 12 12 C 1.46902 * 110.99989 * 180.02562 * 11 10 7 13 13 C 1.50700 * 109.47039 * 180.02562 * 12 11 10 14 14 O 1.21296 * 119.99979 * 359.97438 * 13 12 11 15 15 N 1.34771 * 120.00265 * 179.97438 * 13 12 11 16 16 C 1.37092 * 120.00552 * 179.97438 * 15 13 12 17 17 H 1.08000 * 119.99422 * 0.02562 * 16 15 13 18 18 C 1.38946 * 120.00426 * 179.97438 * 16 15 13 19 19 N 1.31408 * 120.00056 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99981 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47221 * 60.00825 * 20 18 16 22 22 H 1.48503 * 109.47009 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47439 * 300.00139 * 20 18 16 24 24 C 1.38214 * 120.00023 * 180.27821 * 2 1 3 25 25 H 1.09002 * 109.47152 * 269.72306 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.72407 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.72387 * 1 2 3 28 28 H 1.08000 * 119.99861 * 0.02562 * 3 2 1 29 29 H 1.08000 * 120.00520 * 180.23414 * 4 3 2 30 30 H 1.08001 * 119.99902 * 179.72709 * 5 4 3 31 31 H 0.96701 * 114.00706 * 299.99565 * 9 7 6 32 32 H 1.09001 * 109.47606 * 304.99998 * 10 7 6 33 33 H 1.09000 * 109.47401 * 65.00518 * 10 7 6 34 34 H 1.00899 * 110.99913 * 303.95268 * 11 10 7 35 35 H 1.09002 * 109.46939 * 299.99631 * 12 11 10 36 36 H 1.08998 * 109.46992 * 59.99810 * 12 11 10 37 37 H 0.97000 * 119.99633 * 0.02562 * 15 13 12 38 38 H 0.97001 * 120.00136 * 179.97438 * 19 18 16 39 39 H 1.07999 * 119.99625 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0049 5 6 4.2717 0.0000 -0.0009 6 6 3.5806 -1.1970 -0.0062 7 6 4.3341 -2.5021 -0.0130 8 1 3.6796 -3.3014 0.3346 9 8 5.4663 -2.4029 0.8531 10 6 4.8056 -2.8113 -1.4353 11 7 5.4349 -4.1384 -1.4649 12 6 5.9015 -4.4697 -2.8179 13 6 6.5393 -5.8351 -2.8090 14 8 6.5996 -6.4696 -1.7769 15 7 7.0426 -6.3512 -3.9477 16 6 7.6232 -7.5931 -3.9395 17 1 7.6769 -8.1580 -3.0206 18 6 8.1416 -8.1254 -5.1136 19 7 8.0758 -7.4383 -6.2318 20 14 8.9321 -9.8179 -5.1026 21 1 7.9360 -10.8266 -4.6606 22 1 9.4032 -10.1531 -6.4704 23 1 10.0861 -9.8192 -4.1679 24 6 2.1981 -1.1969 -0.0058 25 1 -0.3633 -0.0050 1.0277 26 1 -0.3633 -0.8875 -0.5181 27 1 -0.3633 0.8925 -0.5096 28 1 1.6583 2.1326 0.0004 29 1 4.1205 2.1326 0.0087 30 1 5.3517 -0.0001 -0.0015 31 1 6.0932 -1.7102 0.6034 32 1 3.9512 -2.7992 -2.1120 33 1 5.5290 -2.0591 -1.7499 34 1 6.1902 -4.1954 -0.7983 35 1 5.0549 -4.4691 -3.5045 36 1 6.6325 -3.7289 -3.1417 37 1 6.9946 -5.8437 -4.7729 38 1 8.4380 -7.8098 -7.0514 39 1 1.6581 -2.1322 -0.0108 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905257573.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:08 Heat of formation + Delta-G solvation = -70.166125 kcal Electronic energy + Delta-G solvation = -20433.791262 eV Core-core repulsion = 17147.704377 eV Total energy + Delta-G solvation = -3286.086884 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.02232 -38.31444 -37.42370 -34.78050 -33.75640 -32.96504 -31.83860 -31.19338 -28.70552 -27.17184 -25.96563 -24.09795 -22.55611 -22.33567 -20.62085 -19.22049 -17.87759 -17.51847 -16.51175 -16.22542 -15.77093 -15.45206 -15.10591 -14.47308 -14.31372 -14.19536 -14.10941 -13.76525 -13.47532 -13.32107 -13.04277 -12.59877 -12.45068 -12.36429 -11.89594 -11.80376 -11.51243 -11.48618 -11.35047 -11.05499 -10.98245 -10.42601 -10.23746 -10.17042 -9.48012 -9.04731 -8.85752 -8.43013 -8.05036 -7.93913 -6.39749 -3.80514 1.06647 1.14005 3.21951 3.27198 3.31912 3.45157 3.93025 4.03728 4.24807 4.33512 4.55050 4.61650 4.72395 4.86169 4.99509 5.03528 5.09181 5.18015 5.25385 5.30742 5.31574 5.38273 5.50814 5.66888 5.72568 5.78107 5.82436 5.92953 5.99051 6.20113 6.27854 6.31719 6.38441 6.74945 7.19553 7.48374 7.57056 7.71652 8.08346 8.63636 9.19926 9.56385 10.08240 10.78054 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.039046 B = 0.002636 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.922426 B =10618.414194 C =10760.009259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.086 4.086 3 C -0.123 4.123 4 C -0.114 4.114 5 C -0.118 4.118 6 C -0.106 4.106 7 C 0.148 3.852 8 H 0.118 0.882 9 O -0.550 6.550 10 C 0.035 3.965 11 N -0.665 5.665 12 C 0.050 3.950 13 C 0.441 3.559 14 O -0.581 6.581 15 N -0.564 5.564 16 C -0.299 4.299 17 H 0.103 0.897 18 C 0.022 3.978 19 N -0.903 5.903 20 Si 0.931 3.069 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.274 1.274 24 C -0.108 4.108 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.120 0.880 29 H 0.122 0.878 30 H 0.119 0.881 31 H 0.369 0.631 32 H 0.080 0.920 33 H 0.030 0.970 34 H 0.356 0.644 35 H 0.085 0.915 36 H 0.042 0.958 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.187 19.050 8.495 23.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.086 4.086 3 C -0.142 4.142 4 C -0.132 4.132 5 C -0.136 4.136 6 C -0.107 4.107 7 C 0.089 3.911 8 H 0.136 0.864 9 O -0.354 6.354 10 C -0.095 4.095 11 N -0.298 5.298 12 C -0.082 4.082 13 C 0.226 3.774 14 O -0.465 6.465 15 N -0.201 5.201 16 C -0.429 4.429 17 H 0.120 0.880 18 C -0.180 4.180 19 N -0.545 5.545 20 Si 0.758 3.242 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.199 1.199 24 C -0.126 4.126 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.138 0.862 29 H 0.140 0.860 30 H 0.137 0.863 31 H 0.216 0.784 32 H 0.099 0.901 33 H 0.048 0.952 34 H 0.176 0.824 35 H 0.103 0.897 36 H 0.060 0.940 37 H 0.225 0.775 38 H 0.082 0.918 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.964 17.722 9.220 23.286 hybrid contribution 1.407 0.639 -1.134 1.917 sum -10.557 18.361 8.086 22.671 Atomic orbital electron populations 1.20807 0.91099 1.02895 1.02396 1.19934 0.96156 0.93097 0.99370 1.21041 0.94287 0.97491 1.01335 1.21087 0.94325 0.97858 0.99939 1.20871 0.99722 0.92090 1.00950 1.20572 0.94504 0.95785 0.99833 1.20921 0.86991 0.93405 0.89768 0.86425 1.86695 1.34740 1.59447 1.54564 1.22623 0.99603 0.90578 0.96721 1.60024 1.37218 1.25916 1.06673 1.21684 0.99063 0.96219 0.91271 1.19796 0.84449 0.88156 0.84961 1.90533 1.61787 1.62213 1.31979 1.41852 1.51720 1.17485 1.09050 1.19662 1.33395 0.93188 0.96634 0.87960 1.25260 0.97969 0.99984 0.94756 1.69604 1.46550 1.38583 0.99722 0.85911 0.79474 0.81702 0.77091 1.19865 1.20998 1.19909 1.20928 0.93312 0.97928 1.00409 0.91121 0.91328 0.91569 0.86190 0.86014 0.86303 0.78358 0.90132 0.95225 0.82378 0.89661 0.93966 0.77478 0.91842 0.85661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.76 10.01 36.01 0.36 -0.40 16 2 C -0.09 -0.77 5.88 -104.62 -0.62 -1.38 16 3 C -0.12 -1.05 9.70 -39.58 -0.38 -1.43 16 4 C -0.11 -0.98 10.05 -39.58 -0.40 -1.38 16 5 C -0.12 -1.11 9.32 -39.58 -0.37 -1.47 16 6 C -0.11 -1.11 4.97 -104.62 -0.52 -1.63 16 7 C 0.15 1.74 3.45 -27.89 -0.10 1.64 16 8 H 0.12 1.50 8.00 -51.93 -0.42 1.08 16 9 O -0.55 -6.72 12.71 -35.23 -0.45 -7.17 16 10 C 0.03 0.44 5.34 -3.82 -0.02 0.42 16 11 N -0.66 -11.20 6.13 -115.05 -0.70 -11.91 16 12 C 0.05 0.91 6.17 -4.97 -0.03 0.88 16 13 C 0.44 10.69 7.82 -10.99 -0.09 10.61 16 14 O -0.58 -16.25 15.78 5.54 0.09 -16.17 16 15 N -0.56 -14.58 5.29 -10.97 -0.06 -14.64 16 16 C -0.30 -8.48 9.68 -14.94 -0.14 -8.63 16 17 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 18 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 19 N -0.90 -24.84 13.05 55.50 0.72 -24.11 16 20 Si 0.93 21.31 29.55 -169.99 -5.02 16.28 16 21 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 24 C -0.11 -1.08 9.32 -39.58 -0.37 -1.44 16 25 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 27 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 28 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 29 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 30 H 0.12 0.89 6.79 -52.49 -0.36 0.54 16 31 H 0.37 3.22 7.50 45.56 0.34 3.56 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.36 6.37 7.99 -39.29 -0.31 6.05 16 35 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.39 9.64 7.90 -40.82 -0.32 9.32 16 38 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 39 H 0.13 1.12 8.04 -52.49 -0.42 0.70 16 LS Contribution 335.71 15.07 5.06 5.06 Total: -1.00 -32.93 335.71 -7.93 -40.86 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: -4.80 Total: 15.52 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -2.77 Total: -3.73 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: -0.04 Total: -50.66 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.36 Total: -23.33 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.93 -7.93 -40.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905257573.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.311 kcal (2) G-P(sol) polarization free energy of solvation -32.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds