Wall clock time and date at job start Tue Mar 31 2020 00:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38584 * 120.72506 * 2 1 4 4 C 1.38785 * 119.26352 * 179.97438 * 3 2 1 5 5 O 1.35664 * 119.64362 * 180.02562 * 4 3 2 6 6 N 1.32320 * 120.70991 * 359.72652 * 4 3 2 7 7 C 1.32418 * 121.56307 * 0.55937 * 6 4 3 8 8 N 1.39401 * 119.65881 * 179.71296 * 7 6 4 9 9 C 1.34781 * 120.00073 * 4.80433 * 8 7 6 10 10 O 1.21279 * 119.99751 * 354.91374 * 9 8 7 11 11 C 1.50694 * 120.00253 * 174.91936 * 9 8 7 12 12 C 1.52997 * 109.47464 * 179.97438 * 11 9 8 13 13 C 1.52995 * 109.47177 * 179.97438 * 12 11 9 14 14 C 1.53005 * 109.47071 * 180.02562 * 13 12 11 15 15 C 1.50704 * 109.47167 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99636 * 0.02562 * 15 14 13 17 17 C 1.37872 * 119.99838 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99642 * 180.02562 * 17 15 14 19 19 Si 1.86806 * 120.00206 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.46867 * 90.00004 * 19 17 15 21 21 H 1.48501 * 109.46968 * 209.99691 * 19 17 15 22 22 H 1.48500 * 109.46725 * 330.00077 * 19 17 15 23 23 C 1.38514 * 120.71722 * 179.97438 * 2 1 3 24 24 H 1.09005 * 109.47024 * 270.02300 * 1 2 3 25 25 H 1.09005 * 109.47246 * 30.01557 * 1 2 3 26 26 H 1.08993 * 109.47963 * 150.02291 * 1 2 3 27 27 H 1.08001 * 120.36713 * 0.02562 * 3 2 1 28 28 H 0.96699 * 114.00314 * 89.99412 * 5 4 3 29 29 H 0.96992 * 120.00036 * 184.80121 * 8 7 6 30 30 H 1.09007 * 109.46536 * 299.99786 * 11 9 8 31 31 H 1.09000 * 109.47554 * 59.99351 * 11 9 8 32 32 H 1.08997 * 109.47210 * 299.99768 * 12 11 9 33 33 H 1.09005 * 109.46688 * 59.99629 * 12 11 9 34 34 H 1.09001 * 109.47542 * 299.99540 * 13 12 11 35 35 H 1.09000 * 109.47514 * 59.99828 * 13 12 11 36 36 H 1.08997 * 109.47104 * 299.99862 * 14 13 12 37 37 H 1.09002 * 109.47142 * 60.00248 * 14 13 12 38 38 H 0.97003 * 119.99616 * 179.97438 * 18 17 15 39 39 H 1.08003 * 120.38992 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2150 1.1913 0.0000 4 6 3.6024 1.1559 0.0005 5 8 4.3033 2.3175 0.0011 6 7 4.2490 0.0014 0.0065 7 6 3.6032 -1.1546 0.0011 8 7 4.3244 -2.3476 0.0016 9 6 5.6680 -2.3228 0.1054 10 8 6.2567 -1.2625 0.1053 11 6 6.4387 -3.6125 0.2213 12 6 7.9341 -3.3056 0.3240 13 6 8.7165 -4.6151 0.4423 14 6 10.2119 -4.3081 0.5457 15 6 10.9825 -5.5979 0.6629 16 1 10.4582 -6.5420 0.6632 17 6 12.3569 -5.5725 0.7687 18 7 13.0295 -6.6981 0.8705 19 14 13.2639 -3.9393 0.7675 20 1 13.3957 -3.4454 2.1617 21 1 14.6143 -4.1235 0.1779 22 1 12.5025 -2.9510 -0.0379 23 6 2.2145 -1.1908 0.0005 24 1 -0.3633 0.0004 1.0277 25 1 -0.3634 0.8899 -0.5141 26 1 -0.3635 -0.8901 -0.5134 27 1 1.6930 2.1367 0.0004 28 1 4.5061 2.6541 0.8846 29 1 3.8593 -3.1955 -0.0726 30 1 6.1156 -4.1499 1.1129 31 1 6.2539 -4.2268 -0.6600 32 1 8.2569 -2.7685 -0.5678 33 1 8.1191 -2.6912 1.2052 34 1 8.3937 -5.1519 1.3344 35 1 8.5314 -5.2298 -0.4385 36 1 10.5350 -3.7711 -0.3461 37 1 10.3966 -3.6936 1.4269 38 1 13.9965 -6.6802 0.9445 39 1 1.6927 -2.1364 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000910607754.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:44 Heat of formation + Delta-G solvation = -50.764235 kcal Electronic energy + Delta-G solvation = -20329.992320 eV Core-core repulsion = 17044.746765 eV Total energy + Delta-G solvation = -3285.245555 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.15372 -39.53713 -37.45395 -35.39173 -34.85545 -33.62917 -32.55407 -30.49451 -29.45618 -28.30661 -26.11374 -23.61172 -23.16423 -21.59738 -20.28626 -20.02481 -18.83608 -17.38517 -17.24062 -16.60271 -16.33143 -15.98531 -15.95084 -15.40573 -14.47969 -14.24642 -14.04978 -13.92159 -13.30451 -13.15219 -13.04227 -12.64845 -12.38905 -12.30303 -12.09438 -11.89498 -11.74800 -11.11907 -10.76356 -10.74791 -10.53759 -10.32817 -9.85076 -9.78543 -9.64524 -9.54598 -9.16225 -9.10172 -8.51427 -8.48227 -5.99538 -3.96972 0.69255 0.93056 2.56900 2.59595 3.34088 3.36735 3.43756 3.50287 3.60217 4.18890 4.49918 4.51409 4.64272 4.75123 4.77923 5.01525 5.07719 5.18498 5.20222 5.25364 5.35457 5.40737 5.47261 5.73402 5.86622 5.92646 6.01389 6.12800 6.35483 6.43163 6.67738 6.80834 6.93739 7.00476 7.26334 7.39087 7.51881 7.78813 7.85896 8.15972 8.59189 9.05333 9.63959 11.13911 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.036529 B = 0.002697 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.333347 B =10379.536412 C =11100.696230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.002 4.002 3 C -0.225 4.225 4 C 0.347 3.653 5 O -0.480 6.480 6 N -0.501 5.501 7 C 0.394 3.606 8 N -0.667 5.667 9 C 0.499 3.501 10 O -0.463 6.463 11 C -0.136 4.136 12 C -0.107 4.107 13 C -0.102 4.102 14 C -0.016 4.016 15 C -0.519 4.519 16 H 0.071 0.929 17 C 0.064 3.936 18 N -0.906 5.906 19 Si 0.879 3.121 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.264 1.264 23 C -0.225 4.225 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.139 0.861 28 H 0.402 0.598 29 H 0.419 0.581 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.016 0.984 37 H 0.011 0.989 38 H 0.262 0.738 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.271 13.146 -0.539 32.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.010 4.010 3 C -0.248 4.248 4 C 0.168 3.832 5 O -0.287 6.287 6 N -0.227 5.227 7 C 0.162 3.838 8 N -0.315 5.315 9 C 0.285 3.715 10 O -0.331 6.331 11 C -0.176 4.176 12 C -0.145 4.145 13 C -0.139 4.139 14 C -0.053 4.053 15 C -0.557 4.557 16 H 0.089 0.911 17 C -0.136 4.136 18 N -0.545 5.545 19 Si 0.707 3.293 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.189 1.189 23 C -0.248 4.248 24 H 0.098 0.902 25 H 0.092 0.908 26 H 0.093 0.907 27 H 0.157 0.843 28 H 0.260 0.740 29 H 0.256 0.744 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.034 0.966 37 H 0.030 0.970 38 H 0.072 0.928 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -27.652 13.798 -1.100 30.923 hybrid contribution -0.391 0.389 0.458 0.717 sum -28.043 14.187 -0.641 31.434 Atomic orbital electron populations 1.20830 0.89649 1.03586 1.03114 1.19929 0.96660 0.91675 0.92719 1.21849 0.93709 0.99455 1.09794 1.18924 0.86667 0.84717 0.92925 1.84766 1.76201 1.33757 1.34016 1.67021 1.41058 0.97075 1.17510 1.18101 0.87552 0.85717 0.92383 1.43960 1.08077 1.06810 1.72639 1.21450 0.81069 0.92915 0.76021 1.90832 1.67471 1.32122 1.42638 1.21816 0.97542 0.93861 1.04389 1.21509 0.90516 0.99515 1.03004 1.21471 0.96992 0.94580 1.00907 1.19582 0.91912 0.97491 0.96348 1.21177 0.91636 0.92880 1.50009 0.91103 1.25044 0.97726 0.96249 0.94623 1.69922 1.07416 1.26135 1.51060 0.86774 0.78986 0.84849 0.78702 1.20326 1.21458 1.18869 1.21329 0.92297 0.99698 1.11501 0.90220 0.90767 0.90738 0.84324 0.73978 0.74446 0.88628 0.88668 0.91638 0.91689 0.92817 0.92774 0.96584 0.97042 0.92826 0.84295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.47 10.06 36.01 0.36 -0.11 16 2 C 0.00 -0.01 5.91 -104.39 -0.62 -0.63 16 3 C -0.23 -2.00 9.74 -39.25 -0.38 -2.38 16 4 C 0.35 4.23 7.74 -17.14 -0.13 4.09 16 5 O -0.48 -5.38 13.56 -18.69 -0.25 -5.63 16 6 N -0.50 -7.41 7.91 -12.44 -0.10 -7.51 16 7 C 0.39 4.65 7.42 -154.70 -1.15 3.50 16 8 N -0.67 -6.91 5.39 -11.44 -0.06 -6.98 16 9 C 0.50 6.92 7.79 -10.99 -0.09 6.83 16 10 O -0.46 -8.64 14.24 5.56 0.08 -8.57 16 11 C -0.14 -1.67 5.70 -27.89 -0.16 -1.83 16 12 C -0.11 -1.80 4.50 -26.74 -0.12 -1.92 16 13 C -0.10 -2.00 5.15 -26.73 -0.14 -2.13 16 14 C -0.02 -0.39 4.04 -27.88 -0.11 -0.51 16 15 C -0.52 -15.15 9.66 -34.44 -0.33 -15.49 16 16 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 17 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 18 N -0.91 -28.51 13.96 55.43 0.77 -27.74 16 19 Si 0.88 22.57 27.47 -169.99 -4.67 17.90 16 20 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 22 H -0.26 -6.60 6.54 56.52 0.37 -6.23 16 23 C -0.22 -1.85 9.63 -39.23 -0.38 -2.22 16 24 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 25 H 0.07 0.25 8.10 -51.93 -0.42 -0.17 16 26 H 0.07 0.23 8.10 -51.93 -0.42 -0.19 16 27 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 28 H 0.40 2.50 9.06 45.56 0.41 2.91 16 29 H 0.42 2.47 8.70 -40.82 -0.36 2.11 16 30 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.06 1.18 8.10 -51.93 -0.42 0.75 16 33 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 34 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 37 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 38 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 39 H 0.14 0.69 8.06 -52.48 -0.42 0.27 16 LS Contribution 334.15 15.07 5.04 5.04 Total: -1.00 -38.61 334.15 -7.47 -46.08 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -4.94 Total: -1.61 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: -3.34 Total: -10.97 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: 0.61 Total: -42.23 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.17 Total: -14.20 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.67 Total: 17.90 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -38.61 -7.47 -46.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000910607754.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.685 kcal (2) G-P(sol) polarization free energy of solvation -38.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds